Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04630 and IAI47_04635 overlap by 4 nucleotides IAI47_04635 and IAI47_04640 overlap by 1 nucleotides IAI47_04640 and IAI47_04645 are separated by 15 nucleotides
IAI47_04630: IAI47_04630 - allose kinase, at 975,226 to 976,122
_04630
IAI47_04635: IAI47_04635 - ribulose-phosphate 3-epimerase, at 976,119 to 976,811
_04635
IAI47_04640: IAI47_04640 - ABC transporter permease, at 976,811 to 977,860
_04640
IAI47_04645: IAI47_04645 - ABC transporter permease, at 977,876 to 978,865
_04645
IAI47_04650: IAI47_04650 - sugar ABC transporter ATP-binding protein, at 978,858 to 980,363
_04650
Position (kb) 976
977
978 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 975.873 kb on + strand, within IAI47_04630 at 975.874 kb on - strand, within IAI47_04630 at 975.933 kb on + strand, within IAI47_04630 at 975.933 kb on + strand, within IAI47_04630 at 975.934 kb on - strand, within IAI47_04630 at 975.934 kb on - strand, within IAI47_04630 at 975.934 kb on - strand, within IAI47_04630 at 975.934 kb on - strand, within IAI47_04630 at 975.972 kb on + strand, within IAI47_04630 at 975.972 kb on + strand, within IAI47_04630 at 975.972 kb on + strand, within IAI47_04630 at 975.972 kb on + strand, within IAI47_04630 at 975.973 kb on - strand, within IAI47_04630 at 975.973 kb on - strand, within IAI47_04630 at 975.973 kb on - strand, within IAI47_04630 at 976.188 kb on + strand at 976.205 kb on + strand, within IAI47_04635 at 976.205 kb on + strand, within IAI47_04635 at 976.206 kb on - strand, within IAI47_04635 at 976.206 kb on - strand, within IAI47_04635 at 976.210 kb on - strand, within IAI47_04635 at 976.210 kb on - strand, within IAI47_04635 at 976.210 kb on - strand, within IAI47_04635 at 976.210 kb on - strand, within IAI47_04635 at 976.253 kb on + strand, within IAI47_04635 at 976.253 kb on + strand, within IAI47_04635 at 976.253 kb on + strand, within IAI47_04635 at 976.253 kb on + strand, within IAI47_04635 at 976.253 kb on + strand, within IAI47_04635 at 976.253 kb on + strand, within IAI47_04635 at 976.254 kb on - strand, within IAI47_04635 at 976.264 kb on + strand, within IAI47_04635 at 976.264 kb on + strand, within IAI47_04635 at 976.264 kb on + strand, within IAI47_04635 at 976.265 kb on - strand, within IAI47_04635 at 976.265 kb on - strand, within IAI47_04635 at 976.277 kb on + strand, within IAI47_04635 at 976.294 kb on + strand, within IAI47_04635 at 976.303 kb on + strand, within IAI47_04635 at 976.303 kb on + strand, within IAI47_04635 at 976.303 kb on + strand, within IAI47_04635 at 976.303 kb on + strand, within IAI47_04635 at 976.303 kb on + strand, within IAI47_04635 at 976.303 kb on + strand, within IAI47_04635 at 976.303 kb on + strand, within IAI47_04635 at 976.304 kb on - strand, within IAI47_04635 at 976.304 kb on - strand, within IAI47_04635 at 976.304 kb on - strand, within IAI47_04635 at 976.304 kb on - strand, within IAI47_04635 at 976.304 kb on - strand, within IAI47_04635 at 976.304 kb on - strand, within IAI47_04635 at 976.304 kb on - strand, within IAI47_04635 at 976.304 kb on - strand, within IAI47_04635 at 976.309 kb on + strand, within IAI47_04635 at 976.368 kb on - strand, within IAI47_04635 at 976.429 kb on - strand, within IAI47_04635 at 976.430 kb on + strand, within IAI47_04635 at 976.430 kb on + strand, within IAI47_04635 at 976.431 kb on - strand, within IAI47_04635 at 976.431 kb on - strand, within IAI47_04635 at 976.431 kb on - strand, within IAI47_04635 at 976.431 kb on - strand, within IAI47_04635 at 976.432 kb on + strand, within IAI47_04635 at 976.432 kb on + strand, within IAI47_04635 at 976.432 kb on + strand, within IAI47_04635 at 976.432 kb on + strand, within IAI47_04635 at 976.432 kb on + strand, within IAI47_04635 at 976.432 kb on + strand, within IAI47_04635 at 976.432 kb on + strand, within IAI47_04635 at 976.432 kb on + strand, within IAI47_04635 at 976.433 kb on - strand, within IAI47_04635 at 976.433 kb on - strand, within IAI47_04635 at 976.433 kb on - strand, within IAI47_04635 at 976.433 kb on - strand, within IAI47_04635 at 976.433 kb on - strand, within IAI47_04635 at 976.433 kb on - strand, within IAI47_04635 at 976.433 kb on - strand, within IAI47_04635 at 976.433 kb on - strand, within IAI47_04635 at 976.433 kb on - strand, within IAI47_04635 at 976.442 kb on + strand, within IAI47_04635 at 976.442 kb on + strand, within IAI47_04635 at 976.442 kb on + strand, within IAI47_04635 at 976.442 kb on + strand, within IAI47_04635 at 976.442 kb on + strand, within IAI47_04635 at 976.442 kb on + strand, within IAI47_04635 at 976.442 kb on + strand, within IAI47_04635 at 976.442 kb on + strand, within IAI47_04635 at 976.442 kb on + strand, within IAI47_04635 at 976.442 kb on + strand, within IAI47_04635 at 976.442 kb on + strand, within IAI47_04635 at 976.443 kb on - strand, within IAI47_04635 at 976.443 kb on - strand, within IAI47_04635 at 976.443 kb on - strand, within IAI47_04635 at 976.443 kb on - strand, within IAI47_04635 at 976.444 kb on + strand, within IAI47_04635 at 976.444 kb on + strand, within IAI47_04635 at 976.444 kb on + strand, within IAI47_04635 at 976.444 kb on + strand, within IAI47_04635 at 976.444 kb on + strand, within IAI47_04635 at 976.444 kb on + strand, within IAI47_04635 at 976.444 kb on + strand, within IAI47_04635 at 976.445 kb on - strand, within IAI47_04635 at 976.445 kb on - strand, within IAI47_04635 at 976.445 kb on - strand, within IAI47_04635 at 976.445 kb on - strand, within IAI47_04635 at 976.445 kb on - strand, within IAI47_04635 at 976.492 kb on + strand, within IAI47_04635 at 976.493 kb on - strand, within IAI47_04635 at 976.493 kb on - strand, within IAI47_04635 at 976.493 kb on - strand, within IAI47_04635 at 976.508 kb on + strand, within IAI47_04635 at 976.508 kb on + strand, within IAI47_04635 at 976.509 kb on - strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.558 kb on + strand, within IAI47_04635 at 976.558 kb on + strand, within IAI47_04635 at 976.558 kb on + strand, within IAI47_04635 at 976.559 kb on - strand, within IAI47_04635 at 976.559 kb on - strand, within IAI47_04635 at 976.559 kb on - strand, within IAI47_04635 at 976.559 kb on - strand, within IAI47_04635 at 976.559 kb on - strand, within IAI47_04635 at 976.559 kb on - strand, within IAI47_04635 at 976.559 kb on - strand, within IAI47_04635 at 976.595 kb on + strand, within IAI47_04635 at 976.680 kb on + strand, within IAI47_04635 at 976.680 kb on + strand, within IAI47_04635 at 976.680 kb on + strand, within IAI47_04635 at 976.680 kb on + strand, within IAI47_04635 at 976.680 kb on + strand, within IAI47_04635 at 976.680 kb on + strand, within IAI47_04635 at 976.680 kb on + strand, within IAI47_04635 at 976.681 kb on - strand, within IAI47_04635 at 976.682 kb on + strand, within IAI47_04635 at 976.682 kb on + strand, within IAI47_04635 at 976.693 kb on + strand, within IAI47_04635 at 976.693 kb on + strand, within IAI47_04635 at 976.693 kb on + strand, within IAI47_04635 at 976.693 kb on + strand, within IAI47_04635 at 976.693 kb on + strand, within IAI47_04635 at 976.693 kb on + strand, within IAI47_04635 at 976.694 kb on - strand, within IAI47_04635 at 976.749 kb on + strand at 976.750 kb on - strand at 976.778 kb on + strand at 976.778 kb on + strand at 976.778 kb on + strand at 976.778 kb on + strand at 976.779 kb on - strand at 976.779 kb on - strand at 976.779 kb on - strand at 976.779 kb on - strand at 976.779 kb on - strand at 976.779 kb on - strand at 976.779 kb on - strand at 976.779 kb on - strand at 976.779 kb on - strand at 976.779 kb on - strand at 976.806 kb on - strand at 976.814 kb on + strand at 976.815 kb on - strand at 976.815 kb on - strand at 976.815 kb on - strand at 976.815 kb on - strand at 976.815 kb on - strand at 976.815 kb on - strand at 976.840 kb on + strand at 976.840 kb on + strand at 976.840 kb on + strand at 976.840 kb on + strand at 976.840 kb on + strand at 976.841 kb on - strand at 976.841 kb on - strand at 976.868 kb on + strand at 976.868 kb on + strand at 976.868 kb on + strand at 976.897 kb on + strand at 976.898 kb on - strand at 976.907 kb on - strand at 976.928 kb on + strand, within IAI47_04640 at 976.929 kb on - strand, within IAI47_04640 at 976.929 kb on - strand, within IAI47_04640 at 976.929 kb on - strand, within IAI47_04640 at 976.994 kb on + strand, within IAI47_04640 at 976.994 kb on + strand, within IAI47_04640 at 976.994 kb on + strand, within IAI47_04640 at 976.994 kb on + strand, within IAI47_04640 at 976.995 kb on - strand, within IAI47_04640 at 977.081 kb on + strand, within IAI47_04640 at 977.081 kb on + strand, within IAI47_04640 at 977.081 kb on + strand, within IAI47_04640 at 977.082 kb on - strand, within IAI47_04640 at 977.082 kb on - strand, within IAI47_04640 at 977.082 kb on - strand, within IAI47_04640 at 977.091 kb on - strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.129 kb on - strand, within IAI47_04640 at 977.143 kb on + strand, within IAI47_04640 at 977.143 kb on + strand, within IAI47_04640 at 977.143 kb on + strand, within IAI47_04640 at 977.143 kb on + strand, within IAI47_04640 at 977.143 kb on + strand, within IAI47_04640 at 977.144 kb on - strand, within IAI47_04640 at 977.184 kb on + strand, within IAI47_04640 at 977.184 kb on + strand, within IAI47_04640 at 977.184 kb on + strand, within IAI47_04640 at 977.185 kb on - strand, within IAI47_04640 at 977.185 kb on - strand, within IAI47_04640 at 977.185 kb on - strand, within IAI47_04640 at 977.185 kb on - strand, within IAI47_04640 at 977.185 kb on - strand, within IAI47_04640 at 977.209 kb on + strand, within IAI47_04640 at 977.210 kb on - strand, within IAI47_04640 at 977.240 kb on - strand, within IAI47_04640 at 977.256 kb on + strand, within IAI47_04640 at 977.256 kb on + strand, within IAI47_04640 at 977.256 kb on + strand, within IAI47_04640 at 977.256 kb on + strand, within IAI47_04640 at 977.257 kb on - strand, within IAI47_04640 at 977.257 kb on - strand, within IAI47_04640 at 977.257 kb on - strand, within IAI47_04640 at 977.257 kb on - strand, within IAI47_04640 at 977.321 kb on + strand, within IAI47_04640 at 977.322 kb on - strand, within IAI47_04640 at 977.341 kb on + strand, within IAI47_04640 at 977.353 kb on + strand, within IAI47_04640 at 977.354 kb on - strand, within IAI47_04640 at 977.373 kb on - strand, within IAI47_04640 at 977.419 kb on + strand, within IAI47_04640 at 977.420 kb on - strand, within IAI47_04640 at 977.420 kb on - strand, within IAI47_04640 at 977.486 kb on + strand, within IAI47_04640 at 977.501 kb on + strand, within IAI47_04640 at 977.513 kb on + strand, within IAI47_04640 at 977.702 kb on + strand, within IAI47_04640 at 977.702 kb on + strand, within IAI47_04640 at 977.702 kb on + strand, within IAI47_04640 at 977.702 kb on + strand, within IAI47_04640 at 977.702 kb on + strand, within IAI47_04640 at 977.703 kb on - strand, within IAI47_04640 at 977.703 kb on - strand, within IAI47_04640 at 977.703 kb on - strand, within IAI47_04640 at 977.703 kb on - strand, within IAI47_04640 at 977.731 kb on + strand, within IAI47_04640 at 977.732 kb on - strand, within IAI47_04640 at 977.737 kb on + strand, within IAI47_04640 at 977.738 kb on - strand, within IAI47_04640 at 977.738 kb on - strand, within IAI47_04640 at 977.779 kb on + strand at 977.780 kb on - strand at 977.780 kb on - strand at 977.780 kb on - strand at 977.913 kb on + strand at 977.913 kb on + strand at 977.960 kb on - strand at 977.960 kb on - strand at 977.960 kb on - strand at 977.970 kb on + strand at 977.970 kb on + strand at 977.971 kb on - strand at 977.971 kb on - strand at 978.043 kb on + strand, within IAI47_04645 at 978.043 kb on + strand, within IAI47_04645 at 978.150 kb on + strand, within IAI47_04645 at 978.150 kb on + strand, within IAI47_04645 at 978.151 kb on - strand, within IAI47_04645 at 978.151 kb on - strand, within IAI47_04645 at 978.151 kb on - strand, within IAI47_04645 at 978.151 kb on - strand, within IAI47_04645 at 978.158 kb on + strand, within IAI47_04645 at 978.158 kb on + strand, within IAI47_04645 at 978.198 kb on + strand, within IAI47_04645 at 978.198 kb on + strand, within IAI47_04645 at 978.229 kb on + strand, within IAI47_04645 at 978.229 kb on + strand, within IAI47_04645 at 978.230 kb on - strand, within IAI47_04645 at 978.230 kb on - strand, within IAI47_04645 at 978.230 kb on - strand, within IAI47_04645 at 978.230 kb on - strand, within IAI47_04645 at 978.270 kb on + strand, within IAI47_04645 at 978.270 kb on + strand, within IAI47_04645 at 978.270 kb on + strand, within IAI47_04645 at 978.270 kb on + strand, within IAI47_04645 at 978.271 kb on - strand, within IAI47_04645 at 978.271 kb on - strand, within IAI47_04645 at 978.314 kb on + strand, within IAI47_04645 at 978.426 kb on + strand, within IAI47_04645 at 978.426 kb on + strand, within IAI47_04645 at 978.426 kb on + strand, within IAI47_04645 at 978.539 kb on + strand, within IAI47_04645 at 978.540 kb on - strand, within IAI47_04645 at 978.630 kb on + strand, within IAI47_04645 at 978.630 kb on + strand, within IAI47_04645 at 978.630 kb on + strand, within IAI47_04645 at 978.630 kb on + strand, within IAI47_04645 at 978.631 kb on - strand, within IAI47_04645 at 978.726 kb on + strand, within IAI47_04645 at 978.726 kb on + strand, within IAI47_04645 at 978.726 kb on + strand, within IAI47_04645 at 978.726 kb on + strand, within IAI47_04645 at 978.726 kb on + strand, within IAI47_04645 at 978.726 kb on + strand, within IAI47_04645 at 978.726 kb on + strand, within IAI47_04645 at 978.726 kb on + strand, within IAI47_04645 at 978.727 kb on - strand, within IAI47_04645 at 978.727 kb on - strand, within IAI47_04645 at 978.727 kb on - strand, within IAI47_04645 at 978.727 kb on - strand, within IAI47_04645 at 978.727 kb on - strand, within IAI47_04645
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 975,873 + IAI47_04630 0.72 -0.8 975,874 - IAI47_04630 0.72 +0.1 975,933 + IAI47_04630 0.79 +1.6 975,933 + IAI47_04630 0.79 +0.2 975,934 - IAI47_04630 0.79 +0.5 975,934 - IAI47_04630 0.79 -0.5 975,934 - IAI47_04630 0.79 +1.2 975,934 - IAI47_04630 0.79 -2.1 975,972 + IAI47_04630 0.83 -1.3 975,972 + IAI47_04630 0.83 -0.2 975,972 + IAI47_04630 0.83 -0.4 975,972 + IAI47_04630 0.83 +0.8 975,973 - IAI47_04630 0.83 +0.5 975,973 - IAI47_04630 0.83 +0.7 975,973 - IAI47_04630 0.83 +0.1 976,188 + +1.5 976,205 + IAI47_04635 0.12 -0.6 976,205 + IAI47_04635 0.12 -0.5 976,206 - IAI47_04635 0.13 -0.0 976,206 - IAI47_04635 0.13 -1.7 976,210 - IAI47_04635 0.13 +0.7 976,210 - IAI47_04635 0.13 +0.1 976,210 - IAI47_04635 0.13 +0.1 976,210 - IAI47_04635 0.13 +0.4 976,253 + IAI47_04635 0.19 +0.5 976,253 + IAI47_04635 0.19 -1.3 976,253 + IAI47_04635 0.19 -1.0 976,253 + IAI47_04635 0.19 -1.0 976,253 + IAI47_04635 0.19 +0.5 976,253 + IAI47_04635 0.19 -0.1 976,254 - IAI47_04635 0.19 -0.5 976,264 + IAI47_04635 0.21 +0.5 976,264 + IAI47_04635 0.21 +0.5 976,264 + IAI47_04635 0.21 -2.5 976,265 - IAI47_04635 0.21 -0.3 976,265 - IAI47_04635 0.21 -1.5 976,277 + IAI47_04635 0.23 -0.6 976,294 + IAI47_04635 0.25 -0.2 976,303 + IAI47_04635 0.27 +0.2 976,303 + IAI47_04635 0.27 -0.8 976,303 + IAI47_04635 0.27 -2.1 976,303 + IAI47_04635 0.27 +1.8 976,303 + IAI47_04635 0.27 +0.5 976,303 + IAI47_04635 0.27 +1.0 976,303 + IAI47_04635 0.27 +0.5 976,304 - IAI47_04635 0.27 -0.1 976,304 - IAI47_04635 0.27 +0.8 976,304 - IAI47_04635 0.27 -0.2 976,304 - IAI47_04635 0.27 -0.5 976,304 - IAI47_04635 0.27 +1.5 976,304 - IAI47_04635 0.27 +1.6 976,304 - IAI47_04635 0.27 -1.9 976,304 - IAI47_04635 0.27 -0.5 976,309 + IAI47_04635 0.27 -0.1 976,368 - IAI47_04635 0.36 -0.5 976,429 - IAI47_04635 0.45 +1.5 976,430 + IAI47_04635 0.45 +0.9 976,430 + IAI47_04635 0.45 +2.5 976,431 - IAI47_04635 0.45 +1.0 976,431 - IAI47_04635 0.45 +0.0 976,431 - IAI47_04635 0.45 +1.3 976,431 - IAI47_04635 0.45 -0.1 976,432 + IAI47_04635 0.45 -0.1 976,432 + IAI47_04635 0.45 +0.1 976,432 + IAI47_04635 0.45 +1.1 976,432 + IAI47_04635 0.45 +0.5 976,432 + IAI47_04635 0.45 -0.5 976,432 + IAI47_04635 0.45 -1.1 976,432 + IAI47_04635 0.45 +0.5 976,432 + IAI47_04635 0.45 +0.5 976,433 - IAI47_04635 0.45 -1.1 976,433 - IAI47_04635 0.45 -0.3 976,433 - IAI47_04635 0.45 +0.5 976,433 - IAI47_04635 0.45 -2.3 976,433 - IAI47_04635 0.45 +0.0 976,433 - IAI47_04635 0.45 -0.5 976,433 - IAI47_04635 0.45 -1.5 976,433 - IAI47_04635 0.45 +0.0 976,433 - IAI47_04635 0.45 +0.9 976,442 + IAI47_04635 0.47 -1.4 976,442 + IAI47_04635 0.47 -0.1 976,442 + IAI47_04635 0.47 +3.5 976,442 + IAI47_04635 0.47 -1.1 976,442 + IAI47_04635 0.47 +1.0 976,442 + IAI47_04635 0.47 +0.3 976,442 + IAI47_04635 0.47 -1.0 976,442 + IAI47_04635 0.47 +0.5 976,442 + IAI47_04635 0.47 -0.0 976,442 + IAI47_04635 0.47 -0.5 976,442 + IAI47_04635 0.47 -1.3 976,443 - IAI47_04635 0.47 -0.5 976,443 - IAI47_04635 0.47 -0.5 976,443 - IAI47_04635 0.47 -0.1 976,443 - IAI47_04635 0.47 +1.5 976,444 + IAI47_04635 0.47 +0.5 976,444 + IAI47_04635 0.47 +1.1 976,444 + IAI47_04635 0.47 +0.2 976,444 + IAI47_04635 0.47 +0.5 976,444 + IAI47_04635 0.47 -0.1 976,444 + IAI47_04635 0.47 +1.9 976,444 + IAI47_04635 0.47 -1.9 976,445 - IAI47_04635 0.47 +0.9 976,445 - 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Or see this region's nucleotide sequence