Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_01705 and IAI47_01710 overlap by 20 nucleotides IAI47_01710 and IAI47_01715 overlap by 4 nucleotides IAI47_01715 and IAI47_01720 are separated by 1 nucleotides
IAI47_01705: IAI47_01705 - LysR family transcriptional regulator, at 374,001 to 374,936
_01705
IAI47_01710: IAI47_01710 - malonate decarboxylase subunit epsilon, at 374,917 to 375,819
_01710
IAI47_01715: IAI47_01715 - malonate decarboxylase holo-ACP synthase, at 375,816 to 376,433
_01715
IAI47_01720: IAI47_01720 - AEC family transporter, at 376,435 to 377,394
_01720
Position (kb) 374
375
376 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 373.936 kb on + strand at 373.936 kb on + strand at 373.936 kb on + strand at 373.936 kb on + strand at 373.936 kb on + strand at 373.937 kb on - strand at 373.937 kb on - strand at 373.937 kb on - strand at 373.957 kb on + strand at 373.957 kb on + strand at 373.957 kb on + strand at 373.957 kb on + strand at 373.958 kb on - strand at 373.958 kb on - strand at 373.960 kb on + strand at 373.960 kb on + strand at 373.960 kb on + strand at 373.960 kb on + strand at 373.961 kb on - strand at 373.961 kb on - strand at 373.961 kb on - strand at 373.961 kb on - strand at 373.961 kb on - strand at 373.961 kb on - strand at 373.983 kb on + strand at 373.983 kb on + strand at 373.983 kb on + strand at 373.983 kb on + strand at 373.984 kb on - strand at 373.984 kb on - strand at 374.016 kb on - strand at 374.027 kb on + strand at 374.027 kb on + strand at 374.027 kb on + strand at 374.036 kb on + strand at 374.037 kb on - strand at 374.060 kb on + strand at 374.060 kb on + strand at 374.060 kb on + strand at 374.061 kb on - strand at 374.061 kb on - strand at 374.061 kb on - strand at 374.061 kb on - strand at 374.073 kb on + strand at 374.169 kb on - strand, within IAI47_01705 at 374.174 kb on + strand, within IAI47_01705 at 374.174 kb on + strand, within IAI47_01705 at 374.175 kb on - strand, within IAI47_01705 at 374.223 kb on + strand, within IAI47_01705 at 374.223 kb on + strand, within IAI47_01705 at 374.224 kb on - strand, within IAI47_01705 at 374.224 kb on - strand, within IAI47_01705 at 374.224 kb on - strand, within IAI47_01705 at 374.286 kb on - strand, within IAI47_01705 at 374.319 kb on + strand, within IAI47_01705 at 374.320 kb on - strand, within IAI47_01705 at 374.399 kb on + strand, within IAI47_01705 at 374.399 kb on + strand, within IAI47_01705 at 374.400 kb on - strand, within IAI47_01705 at 374.400 kb on - strand, within IAI47_01705 at 374.400 kb on - strand, within IAI47_01705 at 374.427 kb on - strand, within IAI47_01705 at 374.427 kb on - strand, within IAI47_01705 at 374.427 kb on - strand, within IAI47_01705 at 374.427 kb on - strand, within IAI47_01705 at 374.427 kb on - strand, within IAI47_01705 at 374.427 kb on - strand, within IAI47_01705 at 374.590 kb on - strand, within IAI47_01705 at 374.590 kb on - strand, within IAI47_01705 at 374.590 kb on - strand, within IAI47_01705 at 374.634 kb on + strand, within IAI47_01705 at 374.634 kb on + strand, within IAI47_01705 at 374.634 kb on + strand, within IAI47_01705 at 374.635 kb on - strand, within IAI47_01705 at 374.635 kb on - strand, within IAI47_01705 at 374.635 kb on - strand, within IAI47_01705 at 374.635 kb on - strand, within IAI47_01705 at 374.635 kb on - strand, within IAI47_01705 at 374.635 kb on - strand, within IAI47_01705 at 374.695 kb on + strand, within IAI47_01705 at 374.695 kb on + strand, within IAI47_01705 at 374.695 kb on + strand, within IAI47_01705 at 374.695 kb on + strand, within IAI47_01705 at 374.695 kb on + strand, within IAI47_01705 at 374.695 kb on + strand, within IAI47_01705 at 374.696 kb on - strand, within IAI47_01705 at 374.696 kb on - strand, within IAI47_01705 at 374.696 kb on - strand, within IAI47_01705 at 374.716 kb on + strand, within IAI47_01705 at 374.716 kb on + strand, within IAI47_01705 at 374.716 kb on + strand, within IAI47_01705 at 374.717 kb on - strand, within IAI47_01705 at 374.717 kb on - strand, within IAI47_01705 at 374.717 kb on - strand, within IAI47_01705 at 374.717 kb on - strand, within IAI47_01705 at 374.775 kb on + strand, within IAI47_01705 at 374.775 kb on + strand, within IAI47_01705 at 374.775 kb on + strand, within IAI47_01705 at 374.775 kb on + strand, within IAI47_01705 at 374.776 kb on - strand, within IAI47_01705 at 374.783 kb on + strand, within IAI47_01705 at 374.783 kb on + strand, within IAI47_01705 at 374.784 kb on - strand, within IAI47_01705 at 374.814 kb on + strand, within IAI47_01705 at 374.815 kb on - strand, within IAI47_01705 at 374.844 kb on + strand at 374.844 kb on + strand at 374.918 kb on + strand at 374.918 kb on + strand at 374.919 kb on - strand at 374.919 kb on - strand at 374.919 kb on - strand at 374.926 kb on + strand at 374.926 kb on + strand at 374.926 kb on + strand at 374.926 kb on + strand at 374.964 kb on + strand at 374.964 kb on + strand at 375.111 kb on + strand, within IAI47_01710 at 375.112 kb on - strand, within IAI47_01710 at 375.112 kb on - strand, within IAI47_01710 at 375.112 kb on - strand, within IAI47_01710 at 375.112 kb on - strand, within IAI47_01710 at 375.114 kb on + strand, within IAI47_01710 at 375.114 kb on + strand, within IAI47_01710 at 375.179 kb on + strand, within IAI47_01710 at 375.179 kb on + strand, within IAI47_01710 at 375.179 kb on + strand, within IAI47_01710 at 375.180 kb on - strand, within IAI47_01710 at 375.180 kb on - strand, within IAI47_01710 at 375.243 kb on + strand, within IAI47_01710 at 375.285 kb on + strand, within IAI47_01710 at 375.286 kb on - strand, within IAI47_01710 at 375.286 kb on - strand, within IAI47_01710 at 375.286 kb on - strand, within IAI47_01710 at 375.294 kb on + strand, within IAI47_01710 at 375.392 kb on + strand, within IAI47_01710 at 375.392 kb on + strand, within IAI47_01710 at 375.392 kb on + strand, within IAI47_01710 at 375.392 kb on + strand, within IAI47_01710 at 375.392 kb on + strand, within IAI47_01710 at 375.392 kb on + strand, within IAI47_01710 at 375.392 kb on + strand, within IAI47_01710 at 375.392 kb on + strand, within IAI47_01710 at 375.392 kb on + strand, within IAI47_01710 at 375.393 kb on - strand, within IAI47_01710 at 375.393 kb on - strand, within IAI47_01710 at 375.393 kb on - strand, within IAI47_01710 at 375.393 kb on - strand, within IAI47_01710 at 375.393 kb on - strand, within IAI47_01710 at 375.393 kb on - strand, within IAI47_01710 at 375.393 kb on - strand, within IAI47_01710 at 375.393 kb on - strand, within IAI47_01710 at 375.399 kb on + strand, within IAI47_01710 at 375.399 kb on + strand, within IAI47_01710 at 375.436 kb on + strand, within IAI47_01710 at 375.461 kb on + strand, within IAI47_01710 at 375.461 kb on + strand, within IAI47_01710 at 375.461 kb on + strand, within IAI47_01710 at 375.462 kb on - strand, within IAI47_01710 at 375.462 kb on - strand, within IAI47_01710 at 375.804 kb on + strand at 375.804 kb on + strand at 375.804 kb on + strand at 375.804 kb on + strand at 375.804 kb on + strand at 375.804 kb on + strand at 375.804 kb on + strand at 375.804 kb on + strand at 375.805 kb on - strand at 375.805 kb on - strand at 375.811 kb on + strand at 375.811 kb on + strand at 375.811 kb on + strand at 375.812 kb on - strand at 375.941 kb on + strand, within IAI47_01715 at 375.942 kb on - strand, within IAI47_01715 at 375.942 kb on - strand, within IAI47_01715 at 376.078 kb on + strand, within IAI47_01715 at 376.079 kb on - strand, within IAI47_01715 at 376.157 kb on - strand, within IAI47_01715 at 376.157 kb on - strand, within IAI47_01715 at 376.157 kb on - strand, within IAI47_01715 at 376.224 kb on - strand, within IAI47_01715 at 376.226 kb on + strand, within IAI47_01715 at 376.226 kb on + strand, within IAI47_01715 at 376.226 kb on + strand, within IAI47_01715 at 376.226 kb on + strand, within IAI47_01715 at 376.226 kb on + strand, within IAI47_01715 at 376.226 kb on + strand, within IAI47_01715 at 376.226 kb on + strand, within IAI47_01715 at 376.226 kb on + strand, within IAI47_01715 at 376.226 kb on + strand, within IAI47_01715 at 376.226 kb on + strand, within IAI47_01715 at 376.226 kb on + strand, within IAI47_01715 at 376.226 kb on + strand, within IAI47_01715 at 376.227 kb on - strand, within IAI47_01715 at 376.227 kb on - strand, within IAI47_01715 at 376.227 kb on - strand, within IAI47_01715 at 376.227 kb on - strand, within IAI47_01715 at 376.227 kb on - strand, within IAI47_01715 at 376.380 kb on + strand at 376.380 kb on + strand at 376.380 kb on + strand at 376.433 kb on + strand at 376.433 kb on + strand at 376.433 kb on + strand at 376.433 kb on + strand at 376.433 kb on + strand at 376.433 kb on + strand at 376.433 kb on + strand at 376.434 kb on - strand at 376.434 kb on - strand at 376.434 kb on - strand at 376.434 kb on - strand at 376.434 kb on - strand at 376.434 kb on - strand at 376.434 kb on - strand at 376.436 kb on + strand at 376.436 kb on + strand at 376.436 kb on + strand at 376.436 kb on + strand at 376.436 kb on + strand at 376.436 kb on + strand at 376.436 kb on + strand at 376.436 kb on + strand at 376.437 kb on - strand at 376.437 kb on - strand at 376.437 kb on - strand at 376.437 kb on - strand at 376.437 kb on - strand at 376.437 kb on - strand at 376.437 kb on - strand at 376.437 kb on - strand at 376.437 kb on - strand at 376.455 kb on + strand at 376.455 kb on + strand at 376.455 kb on + strand at 376.455 kb on + strand at 376.455 kb on + strand at 376.455 kb on + strand at 376.468 kb on + strand at 376.474 kb on + strand at 376.474 kb on + strand at 376.475 kb on - strand at 376.480 kb on - strand at 376.480 kb on - strand at 376.495 kb on + strand at 376.496 kb on - strand at 376.496 kb on - strand at 376.496 kb on - strand at 376.496 kb on - strand at 376.579 kb on + strand, within IAI47_01720 at 376.579 kb on + strand, within IAI47_01720 at 376.580 kb on - strand, within IAI47_01720 at 376.580 kb on - strand, within IAI47_01720 at 376.591 kb on - strand, within IAI47_01720 at 376.591 kb on - strand, within IAI47_01720 at 376.777 kb on - strand, within IAI47_01720
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 373,936 + +0.4 373,936 + +1.2 373,936 + -0.6 373,936 + +0.3 373,936 + -0.6 373,937 - +0.3 373,937 - +0.2 373,937 - +0.6 373,957 + -0.7 373,957 + +0.4 373,957 + -0.3 373,957 + -0.9 373,958 - -0.7 373,958 - -0.4 373,960 + -0.4 373,960 + -0.8 373,960 + +0.2 373,960 + +0.2 373,961 - -1.3 373,961 - -0.7 373,961 - +1.4 373,961 - +0.2 373,961 - +0.4 373,961 - +0.8 373,983 + -0.5 373,983 + -0.6 373,983 + -1.7 373,983 + -0.3 373,984 - +0.6 373,984 - +0.4 374,016 - -0.6 374,027 + +1.7 374,027 + -0.2 374,027 + +0.8 374,036 + -0.2 374,037 - +0.5 374,060 + -0.2 374,060 + -0.1 374,060 + +0.7 374,061 - +0.6 374,061 - +0.2 374,061 - -1.2 374,061 - -0.1 374,073 + +0.4 374,169 - IAI47_01705 0.18 +2.8 374,174 + IAI47_01705 0.18 +0.1 374,174 + IAI47_01705 0.18 +1.3 374,175 - IAI47_01705 0.19 -0.1 374,223 + IAI47_01705 0.24 -0.2 374,223 + IAI47_01705 0.24 +0.3 374,224 - IAI47_01705 0.24 +1.3 374,224 - IAI47_01705 0.24 +2.3 374,224 - IAI47_01705 0.24 +1.8 374,286 - IAI47_01705 0.30 +0.7 374,319 + IAI47_01705 0.34 +0.3 374,320 - IAI47_01705 0.34 -0.1 374,399 + IAI47_01705 0.43 +0.2 374,399 + IAI47_01705 0.43 +1.0 374,400 - IAI47_01705 0.43 +0.0 374,400 - IAI47_01705 0.43 -2.2 374,400 - IAI47_01705 0.43 +0.7 374,427 - IAI47_01705 0.46 +0.4 374,427 - IAI47_01705 0.46 -0.6 374,427 - IAI47_01705 0.46 -0.5 374,427 - IAI47_01705 0.46 -1.6 374,427 - IAI47_01705 0.46 -0.2 374,427 - IAI47_01705 0.46 +0.0 374,590 - IAI47_01705 0.63 -0.8 374,590 - IAI47_01705 0.63 +0.7 374,590 - IAI47_01705 0.63 +2.6 374,634 + IAI47_01705 0.68 +1.4 374,634 + IAI47_01705 0.68 +0.4 374,634 + IAI47_01705 0.68 +0.7 374,635 - IAI47_01705 0.68 -0.6 374,635 - IAI47_01705 0.68 -1.6 374,635 - IAI47_01705 0.68 +0.0 374,635 - IAI47_01705 0.68 -1.4 374,635 - IAI47_01705 0.68 +0.5 374,635 - IAI47_01705 0.68 +1.1 374,695 + IAI47_01705 0.74 +1.0 374,695 + IAI47_01705 0.74 -0.8 374,695 + IAI47_01705 0.74 -1.0 374,695 + IAI47_01705 0.74 +1.0 374,695 + IAI47_01705 0.74 +0.8 374,695 + IAI47_01705 0.74 +1.4 374,696 - IAI47_01705 0.74 +0.6 374,696 - IAI47_01705 0.74 -0.3 374,696 - IAI47_01705 0.74 +0.8 374,716 + IAI47_01705 0.76 -0.6 374,716 + IAI47_01705 0.76 -0.0 374,716 + IAI47_01705 0.76 +1.9 374,717 - IAI47_01705 0.76 +1.7 374,717 - IAI47_01705 0.76 +0.4 374,717 - IAI47_01705 0.76 +0.0 374,717 - IAI47_01705 0.76 -0.2 374,775 + IAI47_01705 0.83 +0.6 374,775 + IAI47_01705 0.83 -1.6 374,775 + IAI47_01705 0.83 -0.5 374,775 + IAI47_01705 0.83 -0.8 374,776 - IAI47_01705 0.83 +0.1 374,783 + IAI47_01705 0.84 -0.1 374,783 + IAI47_01705 0.84 +3.0 374,784 - IAI47_01705 0.84 -1.5 374,814 + IAI47_01705 0.87 +1.0 374,815 - IAI47_01705 0.87 +2.0 374,844 + +0.3 374,844 + -1.9 374,918 + +1.4 374,918 + -0.5 374,919 - -0.3 374,919 - +0.4 374,919 - +0.9 374,926 + -0.4 374,926 + +1.2 374,926 + -0.5 374,926 + -0.6 374,964 + +0.4 374,964 + -0.9 375,111 + IAI47_01710 0.21 -0.5 375,112 - IAI47_01710 0.22 -1.4 375,112 - IAI47_01710 0.22 +1.0 375,112 - IAI47_01710 0.22 -1.9 375,112 - IAI47_01710 0.22 -0.3 375,114 + IAI47_01710 0.22 +1.5 375,114 + IAI47_01710 0.22 -0.6 375,179 + IAI47_01710 0.29 -2.2 375,179 + IAI47_01710 0.29 -0.5 375,179 + IAI47_01710 0.29 -1.2 375,180 - IAI47_01710 0.29 -0.6 375,180 - IAI47_01710 0.29 +1.7 375,243 + IAI47_01710 0.36 -1.3 375,285 + IAI47_01710 0.41 +0.6 375,286 - IAI47_01710 0.41 -0.2 375,286 - IAI47_01710 0.41 -0.3 375,286 - IAI47_01710 0.41 -0.6 375,294 + IAI47_01710 0.42 +0.1 375,392 + IAI47_01710 0.53 +0.9 375,392 + IAI47_01710 0.53 +0.2 375,392 + IAI47_01710 0.53 -0.4 375,392 + IAI47_01710 0.53 +0.6 375,392 + IAI47_01710 0.53 -1.5 375,392 + IAI47_01710 0.53 +0.6 375,392 + IAI47_01710 0.53 -1.0 375,392 + IAI47_01710 0.53 +1.7 375,392 + IAI47_01710 0.53 -0.6 375,393 - IAI47_01710 0.53 -1.0 375,393 - IAI47_01710 0.53 -1.3 375,393 - IAI47_01710 0.53 +0.2 375,393 - IAI47_01710 0.53 -1.6 375,393 - IAI47_01710 0.53 +0.5 375,393 - IAI47_01710 0.53 +0.4 375,393 - IAI47_01710 0.53 -0.8 375,393 - IAI47_01710 0.53 -2.2 375,399 + IAI47_01710 0.53 +0.2 375,399 + IAI47_01710 0.53 -0.9 375,436 + IAI47_01710 0.57 -1.1 375,461 + IAI47_01710 0.60 +0.7 375,461 + IAI47_01710 0.60 -0.2 375,461 + IAI47_01710 0.60 -0.2 375,462 - IAI47_01710 0.60 -0.9 375,462 - IAI47_01710 0.60 +1.2 375,804 + +0.0 375,804 + -0.4 375,804 + +0.4 375,804 + -0.3 375,804 + +1.4 375,804 + +0.4 375,804 + +0.7 375,804 + +0.4 375,805 - -0.9 375,805 - -0.1 375,811 + +0.6 375,811 + +1.8 375,811 + +0.0 375,812 - +0.8 375,941 + IAI47_01715 0.20 +2.2 375,942 - IAI47_01715 0.20 +0.2 375,942 - IAI47_01715 0.20 -0.3 376,078 + IAI47_01715 0.42 -0.6 376,079 - IAI47_01715 0.43 +0.1 376,157 - IAI47_01715 0.55 -1.4 376,157 - IAI47_01715 0.55 -0.4 376,157 - IAI47_01715 0.55 -1.4 376,224 - IAI47_01715 0.66 +1.1 376,226 + IAI47_01715 0.66 +0.2 376,226 + IAI47_01715 0.66 +3.4 376,226 + IAI47_01715 0.66 +0.0 376,226 + IAI47_01715 0.66 -0.6 376,226 + IAI47_01715 0.66 +0.1 376,226 + IAI47_01715 0.66 +0.4 376,226 + IAI47_01715 0.66 +0.4 376,226 + IAI47_01715 0.66 -0.3 376,226 + IAI47_01715 0.66 -0.3 376,226 + IAI47_01715 0.66 -0.2 376,226 + IAI47_01715 0.66 +0.1 376,226 + IAI47_01715 0.66 +0.2 376,227 - IAI47_01715 0.67 +0.3 376,227 - IAI47_01715 0.67 +0.4 376,227 - IAI47_01715 0.67 -1.0 376,227 - IAI47_01715 0.67 +0.4 376,227 - IAI47_01715 0.67 -0.6 376,380 + -0.2 376,380 + -0.6 376,380 + -0.4 376,433 + +1.2 376,433 + +0.6 376,433 + +1.2 376,433 + +0.1 376,433 + -0.3 376,433 + +0.3 376,433 + -1.9 376,434 - -0.6 376,434 - +0.1 376,434 - -0.4 376,434 - +0.6 376,434 - +0.4 376,434 - +2.6 376,434 - -0.3 376,436 + +2.3 376,436 + -0.1 376,436 + -0.6 376,436 + +1.2 376,436 + -0.0 376,436 + +0.1 376,436 + -1.3 376,436 + +0.9 376,437 - +0.2 376,437 - -1.6 376,437 - -0.2 376,437 - +0.4 376,437 - +0.4 376,437 - +1.0 376,437 - -1.0 376,437 - -1.9 376,437 - -0.3 376,455 + +0.6 376,455 + -0.5 376,455 + +0.1 376,455 + +0.4 376,455 + -0.6 376,455 + +1.0 376,468 + -0.3 376,474 + -0.6 376,474 + +0.1 376,475 - -0.9 376,480 - +0.0 376,480 - -0.4 376,495 + -0.3 376,496 - -0.8 376,496 - -0.9 376,496 - +1.4 376,496 - +1.6 376,579 + IAI47_01720 0.15 +0.2 376,579 + IAI47_01720 0.15 +0.3 376,580 - IAI47_01720 0.15 +0.1 376,580 - IAI47_01720 0.15 -1.2 376,591 - IAI47_01720 0.16 +0.2 376,591 - IAI47_01720 0.16 -0.3 376,777 - IAI47_01720 0.36 +0.5
Or see this region's nucleotide sequence