Strain Fitness in Pantoea sp. MT58 around IAI47_00520

Experiment: Ying_OrganicAcid7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_00510 and IAI47_00515 are separated by 20 nucleotidesIAI47_00515 and IAI47_00520 are separated by 54 nucleotidesIAI47_00520 and IAI47_00525 are separated by 240 nucleotides IAI47_00510: IAI47_00510 - bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase, at 115,983 to 118,091 _00510 IAI47_00515: IAI47_00515 - DNA-directed RNA polymerase subunit omega, at 118,112 to 118,387 _00515 IAI47_00520: IAI47_00520 - guanylate kinase, at 118,442 to 119,065 _00520 IAI47_00525: IAI47_00525 - NAD-dependent DNA ligase LigB, at 119,306 to 121,057 _00525 Position (kb) 118 119 120Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 118.088 kb on - strandat 118.088 kb on - strandat 118.088 kb on - strandat 118.197 kb on - strand, within IAI47_00515at 118.250 kb on - strand, within IAI47_00515at 118.250 kb on - strand, within IAI47_00515at 118.250 kb on - strand, within IAI47_00515at 118.256 kb on - strand, within IAI47_00515at 118.388 kb on - strandat 118.388 kb on - strandat 118.388 kb on - strandat 118.388 kb on - strandat 118.388 kb on - strandat 118.388 kb on - strandat 118.388 kb on - strandat 118.388 kb on - strandat 118.397 kb on - strandat 118.397 kb on - strandat 118.397 kb on - strandat 118.429 kb on - strandat 118.429 kb on - strandat 118.429 kb on - strandat 118.429 kb on - strandat 118.440 kb on - strandat 118.440 kb on - strandat 119.111 kb on - strandat 119.111 kb on - strandat 119.111 kb on - strandat 119.113 kb on - strandat 119.113 kb on - strandat 119.113 kb on - strandat 119.113 kb on - strandat 119.113 kb on - strandat 119.113 kb on - strandat 119.113 kb on - strandat 119.201 kb on + strandat 119.201 kb on + strandat 119.201 kb on + strandat 119.201 kb on + strandat 119.202 kb on - strandat 119.202 kb on - strandat 119.217 kb on - strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.263 kb on - strandat 119.263 kb on - strandat 119.305 kb on + strandat 119.305 kb on + strandat 119.305 kb on + strandat 119.305 kb on + strandat 119.306 kb on - strandat 119.306 kb on - strandat 119.306 kb on - strandat 119.306 kb on - strandat 119.456 kb on + strandat 119.456 kb on + strandat 119.456 kb on + strandat 119.456 kb on + strandat 119.456 kb on + strandat 119.456 kb on + strandat 119.456 kb on + strandat 119.457 kb on - strandat 119.457 kb on - strandat 119.457 kb on - strandat 119.459 kb on + strandat 119.459 kb on + strandat 119.459 kb on + strandat 119.459 kb on + strandat 119.460 kb on - strandat 119.460 kb on - strandat 119.495 kb on + strand, within IAI47_00525at 119.495 kb on + strand, within IAI47_00525at 119.496 kb on - strand, within IAI47_00525at 119.496 kb on - strand, within IAI47_00525at 119.521 kb on + strand, within IAI47_00525at 119.521 kb on + strand, within IAI47_00525at 119.521 kb on + strand, within IAI47_00525at 119.522 kb on - strand, within IAI47_00525at 119.522 kb on - strand, within IAI47_00525at 119.522 kb on - strand, within IAI47_00525at 119.540 kb on - strand, within IAI47_00525at 119.558 kb on + strand, within IAI47_00525at 119.558 kb on + strand, within IAI47_00525at 119.558 kb on + strand, within IAI47_00525at 119.558 kb on + strand, within IAI47_00525at 119.559 kb on - strand, within IAI47_00525at 119.559 kb on - strand, within IAI47_00525at 119.559 kb on - strand, within IAI47_00525at 119.559 kb on - strand, within IAI47_00525at 119.559 kb on - strand, within IAI47_00525at 119.559 kb on - strand, within IAI47_00525at 119.608 kb on + strand, within IAI47_00525at 119.609 kb on - strand, within IAI47_00525at 119.648 kb on + strand, within IAI47_00525at 119.649 kb on - strand, within IAI47_00525at 119.649 kb on - strand, within IAI47_00525at 119.649 kb on - strand, within IAI47_00525at 119.717 kb on + strand, within IAI47_00525at 119.717 kb on + strand, within IAI47_00525at 119.717 kb on + strand, within IAI47_00525at 119.745 kb on + strand, within IAI47_00525at 119.745 kb on + strand, within IAI47_00525at 119.746 kb on - strand, within IAI47_00525at 119.746 kb on - strand, within IAI47_00525at 119.746 kb on - strand, within IAI47_00525at 119.818 kb on + strand, within IAI47_00525at 119.819 kb on - strand, within IAI47_00525at 119.844 kb on + strand, within IAI47_00525at 119.845 kb on - strand, within IAI47_00525at 119.845 kb on - strand, within IAI47_00525

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3
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118,088 - -0.6
118,088 - -2.8
118,088 - -1.6
118,197 - IAI47_00515 0.31 -1.1
118,250 - IAI47_00515 0.50 -1.1
118,250 - IAI47_00515 0.50 -1.6
118,250 - IAI47_00515 0.50 -2.6
118,256 - IAI47_00515 0.52 -1.1
118,388 - -3.3
118,388 - -2.1
118,388 - -0.9
118,388 - -1.9
118,388 - -1.6
118,388 - -2.6
118,388 - -0.9
118,388 - -2.4
118,397 - -1.6
118,397 - +0.4
118,397 - -2.4
118,429 - -0.2
118,429 - -1.1
118,429 - -1.3
118,429 - -1.3
118,440 - +0.4
118,440 - +0.0
119,111 - +0.4
119,111 - -1.6
119,111 - +0.4
119,113 - +1.4
119,113 - -1.6
119,113 - +0.1
119,113 - +0.9
119,113 - +0.9
119,113 - -0.6
119,113 - -1.6
119,201 + +1.8
119,201 + +0.2
119,201 + -2.1
119,201 + +0.4
119,202 - +0.2
119,202 - -0.6
119,217 - +0.0
119,262 + +0.2
119,262 + -0.1
119,262 + -0.2
119,263 - +0.8
119,263 - +0.4
119,305 + +0.4
119,305 + +0.6
119,305 + +0.3
119,305 + -0.3
119,306 - +0.3
119,306 - +0.4
119,306 - +0.4
119,306 - -0.2
119,456 + +0.6
119,456 + +0.3
119,456 + +3.4
119,456 + +0.0
119,456 + +0.3
119,456 + +2.3
119,456 + +1.3
119,457 - -1.9
119,457 - +0.2
119,457 - -0.3
119,459 + +0.0
119,459 + +0.3
119,459 + -0.2
119,459 + -0.4
119,460 - +0.4
119,460 - -0.4
119,495 + IAI47_00525 0.11 +0.4
119,495 + IAI47_00525 0.11 -0.1
119,496 - IAI47_00525 0.11 +0.4
119,496 - IAI47_00525 0.11 +2.4
119,521 + IAI47_00525 0.12 -0.3
119,521 + IAI47_00525 0.12 +0.8
119,521 + IAI47_00525 0.12 +2.4
119,522 - IAI47_00525 0.12 -2.4
119,522 - IAI47_00525 0.12 -0.4
119,522 - IAI47_00525 0.12 -0.1
119,540 - IAI47_00525 0.13 +3.3
119,558 + IAI47_00525 0.14 -0.6
119,558 + IAI47_00525 0.14 +0.8
119,558 + IAI47_00525 0.14 -1.8
119,558 + IAI47_00525 0.14 -0.3
119,559 - IAI47_00525 0.14 +0.8
119,559 - IAI47_00525 0.14 +0.4
119,559 - IAI47_00525 0.14 -0.3
119,559 - IAI47_00525 0.14 -1.4
119,559 - IAI47_00525 0.14 +1.4
119,559 - IAI47_00525 0.14 -0.8
119,608 + IAI47_00525 0.17 -0.4
119,609 - IAI47_00525 0.17 -0.8
119,648 + IAI47_00525 0.20 -0.7
119,649 - IAI47_00525 0.20 -0.6
119,649 - IAI47_00525 0.20 +0.2
119,649 - IAI47_00525 0.20 -1.0
119,717 + IAI47_00525 0.23 +1.6
119,717 + IAI47_00525 0.23 +0.8
119,717 + IAI47_00525 0.23 +0.1
119,745 + IAI47_00525 0.25 +0.4
119,745 + IAI47_00525 0.25 -2.9
119,746 - IAI47_00525 0.25 -0.6
119,746 - IAI47_00525 0.25 +2.2
119,746 - IAI47_00525 0.25 +0.7
119,818 + IAI47_00525 0.29 +0.6
119,819 - IAI47_00525 0.29 -0.4
119,844 + IAI47_00525 0.31 -0.6
119,845 - IAI47_00525 0.31 -1.9
119,845 - IAI47_00525 0.31 -0.0

Or see this region's nucleotide sequence