Strain Fitness in Pantoea sp. MT58 around IAI47_00190

Experiment: Ying_OrganicAcid7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_00185 and IAI47_00190 are separated by 28 nucleotidesIAI47_00190 and IAI47_00195 are separated by 344 nucleotides IAI47_00185: IAI47_00185 - xylose ABC transporter ATP-binding protein, at 38,153 to 39,673 _00185 IAI47_00190: IAI47_00190 - D-xylose ABC transporter substrate-binding protein, at 39,702 to 40,694 _00190 IAI47_00195: IAI47_00195 - xylose isomerase, at 41,039 to 42,361 _00195 Position (kb) 39 40 41Strain fitness (log2 ratio) -2 -1 0 1 2 3at 38.725 kb on + strand, within IAI47_00185at 38.725 kb on + strand, within IAI47_00185at 38.726 kb on - strand, within IAI47_00185at 38.726 kb on - strand, within IAI47_00185at 38.726 kb on - strand, within IAI47_00185at 38.726 kb on - strand, within IAI47_00185at 38.726 kb on - strand, within IAI47_00185at 38.726 kb on - strand, within IAI47_00185at 38.906 kb on + strand, within IAI47_00185at 38.906 kb on + strand, within IAI47_00185at 38.907 kb on - strand, within IAI47_00185at 38.907 kb on - strand, within IAI47_00185at 38.940 kb on + strand, within IAI47_00185at 38.940 kb on + strand, within IAI47_00185at 38.941 kb on - strand, within IAI47_00185at 38.941 kb on - strand, within IAI47_00185at 39.019 kb on + strand, within IAI47_00185at 39.019 kb on + strand, within IAI47_00185at 39.019 kb on + strand, within IAI47_00185at 39.019 kb on + strand, within IAI47_00185at 39.020 kb on - strand, within IAI47_00185at 39.020 kb on - strand, within IAI47_00185at 39.020 kb on - strand, within IAI47_00185at 39.020 kb on - strand, within IAI47_00185at 39.020 kb on - strand, within IAI47_00185at 39.020 kb on - strand, within IAI47_00185at 39.020 kb on - strand, within IAI47_00185at 39.038 kb on + strand, within IAI47_00185at 39.039 kb on - strand, within IAI47_00185at 39.039 kb on - strand, within IAI47_00185at 39.090 kb on + strand, within IAI47_00185at 39.090 kb on + strand, within IAI47_00185at 39.090 kb on + strand, within IAI47_00185at 39.090 kb on + strand, within IAI47_00185at 39.090 kb on + strand, within IAI47_00185at 39.090 kb on + strand, within IAI47_00185at 39.091 kb on - strand, within IAI47_00185at 39.091 kb on - strand, within IAI47_00185at 39.091 kb on - strand, within IAI47_00185at 39.091 kb on - strand, within IAI47_00185at 39.091 kb on - strand, within IAI47_00185at 39.091 kb on - strand, within IAI47_00185at 39.091 kb on - strand, within IAI47_00185at 39.122 kb on - strand, within IAI47_00185at 39.122 kb on - strand, within IAI47_00185at 39.122 kb on - strand, within IAI47_00185at 39.209 kb on - strand, within IAI47_00185at 39.251 kb on + strand, within IAI47_00185at 39.251 kb on + strand, within IAI47_00185at 39.251 kb on + strand, within IAI47_00185at 39.251 kb on + strand, within IAI47_00185at 39.252 kb on - strand, within IAI47_00185at 39.425 kb on - strand, within IAI47_00185at 39.439 kb on + strand, within IAI47_00185at 39.440 kb on - strand, within IAI47_00185at 39.519 kb on + strand, within IAI47_00185at 39.520 kb on - strand, within IAI47_00185at 39.628 kb on + strandat 39.628 kb on + strandat 39.629 kb on - strandat 39.694 kb on - strandat 39.694 kb on - strandat 39.694 kb on - strandat 39.694 kb on - strandat 39.752 kb on + strandat 39.865 kb on - strand, within IAI47_00190at 39.904 kb on + strand, within IAI47_00190at 39.935 kb on + strand, within IAI47_00190at 39.935 kb on + strand, within IAI47_00190at 39.936 kb on - strand, within IAI47_00190at 39.936 kb on - strand, within IAI47_00190at 39.941 kb on + strand, within IAI47_00190at 39.941 kb on + strand, within IAI47_00190at 40.067 kb on + strand, within IAI47_00190at 40.067 kb on + strand, within IAI47_00190at 40.067 kb on + strand, within IAI47_00190at 40.067 kb on + strand, within IAI47_00190at 40.067 kb on + strand, within IAI47_00190at 40.068 kb on - strand, within IAI47_00190at 40.151 kb on + strand, within IAI47_00190at 40.152 kb on - strand, within IAI47_00190at 40.152 kb on - strand, within IAI47_00190at 40.169 kb on + strand, within IAI47_00190at 40.169 kb on + strand, within IAI47_00190at 40.170 kb on - strand, within IAI47_00190at 40.170 kb on - strand, within IAI47_00190at 40.170 kb on - strand, within IAI47_00190at 40.170 kb on - strand, within IAI47_00190at 40.171 kb on + strand, within IAI47_00190at 40.171 kb on + strand, within IAI47_00190at 40.172 kb on - strand, within IAI47_00190at 40.172 kb on - strand, within IAI47_00190at 40.172 kb on - strand, within IAI47_00190at 40.172 kb on - strand, within IAI47_00190at 40.218 kb on - strand, within IAI47_00190at 40.322 kb on + strand, within IAI47_00190at 40.324 kb on + strand, within IAI47_00190at 40.344 kb on - strand, within IAI47_00190at 40.347 kb on + strand, within IAI47_00190at 40.347 kb on + strand, within IAI47_00190at 40.348 kb on - strand, within IAI47_00190at 40.361 kb on - strand, within IAI47_00190at 40.373 kb on + strand, within IAI47_00190at 40.374 kb on - strand, within IAI47_00190at 40.406 kb on + strand, within IAI47_00190at 40.406 kb on + strand, within IAI47_00190at 40.413 kb on + strand, within IAI47_00190at 40.413 kb on + strand, within IAI47_00190at 40.426 kb on + strand, within IAI47_00190at 40.426 kb on + strand, within IAI47_00190at 40.426 kb on + strand, within IAI47_00190at 40.426 kb on + strand, within IAI47_00190at 40.434 kb on - strand, within IAI47_00190at 40.466 kb on + strand, within IAI47_00190at 40.466 kb on + strand, within IAI47_00190at 40.526 kb on + strand, within IAI47_00190at 40.526 kb on + strand, within IAI47_00190at 40.526 kb on + strand, within IAI47_00190at 40.526 kb on + strand, within IAI47_00190at 40.526 kb on + strand, within IAI47_00190at 40.526 kb on + strand, within IAI47_00190at 40.526 kb on + strand, within IAI47_00190at 40.527 kb on - strand, within IAI47_00190at 40.527 kb on - strand, within IAI47_00190at 40.527 kb on - strand, within IAI47_00190at 40.527 kb on - strand, within IAI47_00190at 40.527 kb on - strand, within IAI47_00190at 40.527 kb on - strand, within IAI47_00190at 40.527 kb on - strand, within IAI47_00190at 40.527 kb on - strand, within IAI47_00190at 40.560 kb on - strand, within IAI47_00190at 40.560 kb on - strand, within IAI47_00190at 40.560 kb on - strand, within IAI47_00190at 40.560 kb on - strand, within IAI47_00190at 40.709 kb on - strandat 40.709 kb on - strandat 40.719 kb on + strandat 40.720 kb on - strandat 40.720 kb on - strandat 40.736 kb on + strandat 40.737 kb on - strandat 40.737 kb on - strandat 40.737 kb on - strandat 40.737 kb on - strandat 40.738 kb on + strandat 40.738 kb on + strandat 40.738 kb on + strandat 40.796 kb on - strandat 40.807 kb on - strandat 40.807 kb on - strandat 40.821 kb on - strandat 40.883 kb on - strandat 40.899 kb on - strandat 40.904 kb on + strandat 40.930 kb on + strandat 40.934 kb on + strandat 40.934 kb on + strandat 40.935 kb on - strandat 40.955 kb on + strandat 40.960 kb on + strandat 40.961 kb on - strandat 40.991 kb on + strandat 40.991 kb on + strandat 40.992 kb on - strandat 40.992 kb on - strandat 41.026 kb on + strandat 41.026 kb on + strandat 41.026 kb on + strandat 41.026 kb on + strandat 41.027 kb on - strandat 41.027 kb on - strandat 41.027 kb on - strandat 41.027 kb on - strandat 41.027 kb on - strandat 41.048 kb on + strandat 41.048 kb on + strandat 41.048 kb on + strandat 41.049 kb on - strandat 41.076 kb on - strandat 41.076 kb on - strandat 41.117 kb on + strandat 41.117 kb on + strandat 41.117 kb on + strandat 41.117 kb on + strandat 41.118 kb on - strandat 41.118 kb on - strandat 41.118 kb on - strandat 41.181 kb on - strand, within IAI47_00195at 41.212 kb on + strand, within IAI47_00195at 41.212 kb on + strand, within IAI47_00195at 41.212 kb on + strand, within IAI47_00195at 41.212 kb on + strand, within IAI47_00195at 41.212 kb on + strand, within IAI47_00195at 41.212 kb on + strand, within IAI47_00195at 41.212 kb on + strand, within IAI47_00195at 41.212 kb on + strand, within IAI47_00195at 41.212 kb on + strand, within IAI47_00195at 41.212 kb on + strand, within IAI47_00195at 41.212 kb on + strand, within IAI47_00195at 41.212 kb on + strand, within IAI47_00195at 41.212 kb on + strand, within IAI47_00195at 41.212 kb on + strand, within IAI47_00195at 41.212 kb on + strand, within IAI47_00195at 41.212 kb on + strand, within IAI47_00195at 41.213 kb on - strand, within IAI47_00195at 41.213 kb on - strand, within IAI47_00195at 41.265 kb on + strand, within IAI47_00195at 41.265 kb on + strand, within IAI47_00195at 41.265 kb on + strand, within IAI47_00195at 41.280 kb on + strand, within IAI47_00195at 41.280 kb on + strand, within IAI47_00195at 41.280 kb on + strand, within IAI47_00195at 41.330 kb on + strand, within IAI47_00195at 41.331 kb on - strand, within IAI47_00195at 41.331 kb on - strand, within IAI47_00195at 41.381 kb on + strand, within IAI47_00195at 41.381 kb on + strand, within IAI47_00195at 41.382 kb on - strand, within IAI47_00195at 41.382 kb on - strand, within IAI47_00195at 41.382 kb on - strand, within IAI47_00195at 41.382 kb on - strand, within IAI47_00195at 41.382 kb on - strand, within IAI47_00195at 41.382 kb on - strand, within IAI47_00195at 41.401 kb on + strand, within IAI47_00195at 41.473 kb on + strand, within IAI47_00195at 41.506 kb on + strand, within IAI47_00195at 41.507 kb on - strand, within IAI47_00195at 41.507 kb on - strand, within IAI47_00195at 41.557 kb on + strand, within IAI47_00195at 41.557 kb on + strand, within IAI47_00195at 41.557 kb on + strand, within IAI47_00195at 41.557 kb on + strand, within IAI47_00195at 41.557 kb on + strand, within IAI47_00195at 41.558 kb on - strand, within IAI47_00195at 41.558 kb on - strand, within IAI47_00195at 41.558 kb on - strand, within IAI47_00195at 41.591 kb on + strand, within IAI47_00195at 41.591 kb on + strand, within IAI47_00195at 41.591 kb on + strand, within IAI47_00195at 41.591 kb on + strand, within IAI47_00195at 41.591 kb on + strand, within IAI47_00195at 41.591 kb on + strand, within IAI47_00195at 41.591 kb on + strand, within IAI47_00195at 41.592 kb on - strand, within IAI47_00195at 41.592 kb on - strand, within IAI47_00195at 41.618 kb on + strand, within IAI47_00195at 41.619 kb on - strand, within IAI47_00195at 41.619 kb on - strand, within IAI47_00195at 41.635 kb on + strand, within IAI47_00195at 41.636 kb on - strand, within IAI47_00195at 41.674 kb on + strand, within IAI47_00195at 41.674 kb on + strand, within IAI47_00195at 41.674 kb on + strand, within IAI47_00195at 41.675 kb on - strand, within IAI47_00195at 41.675 kb on - strand, within IAI47_00195

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3
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38,725 + IAI47_00185 0.38 -0.0
38,725 + IAI47_00185 0.38 -0.4
38,726 - IAI47_00185 0.38 +0.3
38,726 - IAI47_00185 0.38 -0.5
38,726 - IAI47_00185 0.38 -0.6
38,726 - IAI47_00185 0.38 -0.1
38,726 - IAI47_00185 0.38 +0.9
38,726 - IAI47_00185 0.38 -0.6
38,906 + IAI47_00185 0.50 +0.9
38,906 + IAI47_00185 0.50 +0.0
38,907 - IAI47_00185 0.50 -2.3
38,907 - IAI47_00185 0.50 +0.4
38,940 + IAI47_00185 0.52 +2.4
38,940 + IAI47_00185 0.52 +1.0
38,941 - IAI47_00185 0.52 +0.8
38,941 - IAI47_00185 0.52 +0.6
39,019 + IAI47_00185 0.57 +1.0
39,019 + IAI47_00185 0.57 +1.2
39,019 + IAI47_00185 0.57 -0.7
39,019 + IAI47_00185 0.57 -0.3
39,020 - IAI47_00185 0.57 +0.9
39,020 - IAI47_00185 0.57 +1.4
39,020 - IAI47_00185 0.57 +0.9
39,020 - IAI47_00185 0.57 -1.1
39,020 - IAI47_00185 0.57 -1.1
39,020 - IAI47_00185 0.57 -0.2
39,020 - IAI47_00185 0.57 -2.0
39,038 + IAI47_00185 0.58 +1.9
39,039 - IAI47_00185 0.58 +0.3
39,039 - IAI47_00185 0.58 -0.6
39,090 + IAI47_00185 0.62 -1.6
39,090 + IAI47_00185 0.62 +0.9
39,090 + IAI47_00185 0.62 -0.1
39,090 + IAI47_00185 0.62 -1.1
39,090 + IAI47_00185 0.62 -0.3
39,090 + IAI47_00185 0.62 +0.0
39,091 - IAI47_00185 0.62 +1.0
39,091 - IAI47_00185 0.62 +1.4
39,091 - IAI47_00185 0.62 -0.2
39,091 - IAI47_00185 0.62 +0.4
39,091 - IAI47_00185 0.62 +3.1
39,091 - IAI47_00185 0.62 -0.6
39,091 - IAI47_00185 0.62 +0.2
39,122 - IAI47_00185 0.64 -0.9
39,122 - IAI47_00185 0.64 +0.1
39,122 - IAI47_00185 0.64 -0.9
39,209 - IAI47_00185 0.69 -0.1
39,251 + IAI47_00185 0.72 +0.2
39,251 + IAI47_00185 0.72 +1.0
39,251 + IAI47_00185 0.72 +1.0
39,251 + IAI47_00185 0.72 +2.0
39,252 - IAI47_00185 0.72 +1.4
39,425 - IAI47_00185 0.84 +0.9
39,439 + IAI47_00185 0.85 +1.4
39,440 - IAI47_00185 0.85 -1.4
39,519 + IAI47_00185 0.90 -1.0
39,520 - IAI47_00185 0.90 -0.4
39,628 + -1.6
39,628 + +0.4
39,629 - -1.4
39,694 - +0.4
39,694 - +0.0
39,694 - -0.6
39,694 - +0.0
39,752 + -0.3
39,865 - IAI47_00190 0.16 +2.9
39,904 + IAI47_00190 0.20 -1.0
39,935 + IAI47_00190 0.23 +0.9
39,935 + IAI47_00190 0.23 -1.3
39,936 - IAI47_00190 0.24 -0.6
39,936 - IAI47_00190 0.24 -0.6
39,941 + IAI47_00190 0.24 +0.0
39,941 + IAI47_00190 0.24 +0.4
40,067 + IAI47_00190 0.37 -0.7
40,067 + IAI47_00190 0.37 -0.6
40,067 + IAI47_00190 0.37 +0.3
40,067 + IAI47_00190 0.37 -0.3
40,067 + IAI47_00190 0.37 +1.0
40,068 - IAI47_00190 0.37 +0.6
40,151 + IAI47_00190 0.45 +0.6
40,152 - IAI47_00190 0.45 +0.7
40,152 - IAI47_00190 0.45 -1.1
40,169 + IAI47_00190 0.47 -0.9
40,169 + IAI47_00190 0.47 -0.6
40,170 - IAI47_00190 0.47 +1.0
40,170 - IAI47_00190 0.47 +0.6
40,170 - IAI47_00190 0.47 +0.4
40,170 - IAI47_00190 0.47 +0.8
40,171 + IAI47_00190 0.47 -0.4
40,171 + IAI47_00190 0.47 -1.1
40,172 - IAI47_00190 0.47 -0.5
40,172 - IAI47_00190 0.47 -0.1
40,172 - IAI47_00190 0.47 +0.3
40,172 - IAI47_00190 0.47 -0.9
40,218 - IAI47_00190 0.52 -0.1
40,322 + IAI47_00190 0.62 -0.1
40,324 + IAI47_00190 0.63 +0.3
40,344 - IAI47_00190 0.65 +1.0
40,347 + IAI47_00190 0.65 -2.1
40,347 + IAI47_00190 0.65 +0.4
40,348 - IAI47_00190 0.65 -0.2
40,361 - IAI47_00190 0.66 +0.3
40,373 + IAI47_00190 0.68 +0.7
40,374 - IAI47_00190 0.68 +0.4
40,406 + IAI47_00190 0.71 +0.9
40,406 + IAI47_00190 0.71 -1.9
40,413 + IAI47_00190 0.72 +1.7
40,413 + IAI47_00190 0.72 -2.3
40,426 + IAI47_00190 0.73 +0.2
40,426 + IAI47_00190 0.73 +0.1
40,426 + IAI47_00190 0.73 -1.1
40,426 + IAI47_00190 0.73 -0.7
40,434 - IAI47_00190 0.74 -0.0
40,466 + IAI47_00190 0.77 -2.1
40,466 + IAI47_00190 0.77 -0.3
40,526 + IAI47_00190 0.83 +0.3
40,526 + IAI47_00190 0.83 -0.1
40,526 + IAI47_00190 0.83 +0.9
40,526 + IAI47_00190 0.83 +2.4
40,526 + IAI47_00190 0.83 -0.3
40,526 + IAI47_00190 0.83 +0.2
40,526 + IAI47_00190 0.83 -0.6
40,527 - IAI47_00190 0.83 -0.1
40,527 - IAI47_00190 0.83 +0.8
40,527 - IAI47_00190 0.83 -0.6
40,527 - IAI47_00190 0.83 -0.6
40,527 - IAI47_00190 0.83 +1.5
40,527 - IAI47_00190 0.83 +1.9
40,527 - IAI47_00190 0.83 +0.4
40,527 - IAI47_00190 0.83 -1.2
40,560 - IAI47_00190 0.86 -1.4
40,560 - IAI47_00190 0.86 +2.2
40,560 - IAI47_00190 0.86 -0.1
40,560 - IAI47_00190 0.86 +0.6
40,709 - +0.2
40,709 - +0.4
40,719 + -0.5
40,720 - -0.1
40,720 - -0.1
40,736 + -0.3
40,737 - +0.7
40,737 - +1.3
40,737 - -0.3
40,737 - +0.4
40,738 + +2.0
40,738 + +0.8
40,738 + -1.4
40,796 - -0.6
40,807 - +0.3
40,807 - +0.4
40,821 - -0.6
40,883 - -0.8
40,899 - +2.0
40,904 + -0.1
40,930 + +1.3
40,934 + +1.4
40,934 + +2.4
40,935 - -0.8
40,955 + +1.5
40,960 + +0.4
40,961 - -0.6
40,991 + +1.1
40,991 + -0.4
40,992 - -1.1
40,992 - -0.6
41,026 + +0.4
41,026 + +0.1
41,026 + +0.0
41,026 + -0.0
41,027 - -0.0
41,027 - -0.1
41,027 - +0.4
41,027 - +0.4
41,027 - +1.3
41,048 + +0.2
41,048 + -0.8
41,048 + +0.0
41,049 - -0.2
41,076 - +0.2
41,076 - -0.9
41,117 + +0.8
41,117 + -2.4
41,117 + -0.0
41,117 + -1.0
41,118 - +0.9
41,118 - -1.9
41,118 - +0.4
41,181 - IAI47_00195 0.11 -0.3
41,212 + IAI47_00195 0.13 +0.4
41,212 + IAI47_00195 0.13 -1.4
41,212 + IAI47_00195 0.13 -1.1
41,212 + IAI47_00195 0.13 +1.9
41,212 + IAI47_00195 0.13 +0.0
41,212 + IAI47_00195 0.13 +3.2
41,212 + IAI47_00195 0.13 +0.8
41,212 + IAI47_00195 0.13 +0.4
41,212 + IAI47_00195 0.13 +0.0
41,212 + IAI47_00195 0.13 -0.5
41,212 + IAI47_00195 0.13 -0.3
41,212 + IAI47_00195 0.13 +1.4
41,212 + IAI47_00195 0.13 +0.4
41,212 + IAI47_00195 0.13 -0.6
41,212 + IAI47_00195 0.13 +1.0
41,212 + IAI47_00195 0.13 -1.6
41,213 - IAI47_00195 0.13 +1.0
41,213 - IAI47_00195 0.13 +1.0
41,265 + IAI47_00195 0.17 +1.7
41,265 + IAI47_00195 0.17 -0.6
41,265 + IAI47_00195 0.17 +0.8
41,280 + IAI47_00195 0.18 +0.2
41,280 + IAI47_00195 0.18 +0.2
41,280 + IAI47_00195 0.18 -0.2
41,330 + IAI47_00195 0.22 +0.9
41,331 - IAI47_00195 0.22 -0.6
41,331 - IAI47_00195 0.22 -0.4
41,381 + IAI47_00195 0.26 +0.1
41,381 + IAI47_00195 0.26 +1.3
41,382 - IAI47_00195 0.26 -0.1
41,382 - IAI47_00195 0.26 -0.6
41,382 - IAI47_00195 0.26 -0.9
41,382 - IAI47_00195 0.26 -0.0
41,382 - IAI47_00195 0.26 -0.4
41,382 - IAI47_00195 0.26 +0.6
41,401 + IAI47_00195 0.27 +1.4
41,473 + IAI47_00195 0.33 +1.3
41,506 + IAI47_00195 0.35 -0.6
41,507 - IAI47_00195 0.35 -0.6
41,507 - IAI47_00195 0.35 -0.2
41,557 + IAI47_00195 0.39 +0.4
41,557 + IAI47_00195 0.39 -0.7
41,557 + IAI47_00195 0.39 +0.4
41,557 + IAI47_00195 0.39 +0.3
41,557 + IAI47_00195 0.39 -1.1
41,558 - IAI47_00195 0.39 +1.4
41,558 - IAI47_00195 0.39 -1.6
41,558 - IAI47_00195 0.39 -0.0
41,591 + IAI47_00195 0.42 -1.4
41,591 + IAI47_00195 0.42 -1.8
41,591 + IAI47_00195 0.42 +0.4
41,591 + IAI47_00195 0.42 +1.3
41,591 + IAI47_00195 0.42 -0.3
41,591 + IAI47_00195 0.42 -2.0
41,591 + IAI47_00195 0.42 -0.5
41,592 - IAI47_00195 0.42 -0.1
41,592 - IAI47_00195 0.42 -0.4
41,618 + IAI47_00195 0.44 +0.0
41,619 - IAI47_00195 0.44 -0.4
41,619 - IAI47_00195 0.44 +0.8
41,635 + IAI47_00195 0.45 +0.1
41,636 - IAI47_00195 0.45 -0.9
41,674 + IAI47_00195 0.48 -0.4
41,674 + IAI47_00195 0.48 +0.4
41,674 + IAI47_00195 0.48 +0.0
41,675 - IAI47_00195 0.48 -0.1
41,675 - IAI47_00195 0.48 +0.6

Or see this region's nucleotide sequence