Experiment: Ying_AminoAcid20 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_20385 and IAI47_20390 are separated by 62 nucleotides IAI47_20390 and IAI47_20395 are separated by 164 nucleotides IAI47_20395 and IAI47_20400 are separated by 207 nucleotides IAI47_20400 and IAI47_20405 are separated by 71 nucleotides
IAI47_20385: IAI47_20385 - aspartate aminotransferase family protein, at 316,473 to 317,939
_20385
IAI47_20390: IAI47_20390 - hypothetical protein, at 318,002 to 318,151
_20390
IAI47_20395: IAI47_20395 - MFS transporter, at 318,316 to 319,629
_20395
IAI47_20400: IAI47_20400 - DUF2132 domain-containing protein, at 319,837 to 320,145
_20400
IAI47_20405: IAI47_20405 - malate dehydrogenase (quinone), at 320,217 to 321,866
_20405
Position (kb) 318
319
320 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 317.344 kb on - strand, within IAI47_20385 at 317.391 kb on - strand, within IAI47_20385 at 317.449 kb on - strand, within IAI47_20385 at 317.449 kb on - strand, within IAI47_20385 at 317.475 kb on + strand, within IAI47_20385 at 317.475 kb on + strand, within IAI47_20385 at 317.476 kb on - strand, within IAI47_20385 at 317.476 kb on - strand, within IAI47_20385 at 317.601 kb on + strand, within IAI47_20385 at 317.602 kb on - strand, within IAI47_20385 at 317.652 kb on + strand, within IAI47_20385 at 317.652 kb on + strand, within IAI47_20385 at 317.652 kb on + strand, within IAI47_20385 at 317.652 kb on + strand, within IAI47_20385 at 317.653 kb on - strand, within IAI47_20385 at 317.684 kb on - strand, within IAI47_20385 at 317.778 kb on - strand, within IAI47_20385 at 317.888 kb on + strand at 317.889 kb on - strand at 317.889 kb on - strand at 317.889 kb on - strand at 317.937 kb on + strand at 317.937 kb on + strand at 317.938 kb on - strand at 318.151 kb on + strand at 318.178 kb on + strand at 318.178 kb on + strand at 318.179 kb on - strand at 318.179 kb on - strand at 318.190 kb on + strand at 318.190 kb on + strand at 318.190 kb on + strand at 318.191 kb on - strand at 318.191 kb on - strand at 318.191 kb on - strand at 318.191 kb on - strand at 318.192 kb on + strand at 318.192 kb on + strand at 318.192 kb on + strand at 318.192 kb on + strand at 318.192 kb on + strand at 318.192 kb on + strand at 318.192 kb on + strand at 318.192 kb on + strand at 318.193 kb on - strand at 318.193 kb on - strand at 318.193 kb on - strand at 318.193 kb on - strand at 318.193 kb on - strand at 318.193 kb on - strand at 318.193 kb on - strand at 318.194 kb on + strand at 318.194 kb on + strand at 318.194 kb on + strand at 318.194 kb on + strand at 318.194 kb on + strand at 318.194 kb on + strand at 318.195 kb on - strand at 318.195 kb on - strand at 318.195 kb on - strand at 318.195 kb on - strand at 318.213 kb on + strand at 318.257 kb on + strand at 318.257 kb on + strand at 318.257 kb on + strand at 318.257 kb on + strand at 318.257 kb on + strand at 318.258 kb on - strand at 318.258 kb on - strand at 318.258 kb on - strand at 318.258 kb on - strand at 318.258 kb on - strand at 318.258 kb on - strand at 318.258 kb on - strand at 318.360 kb on + strand at 318.361 kb on - strand at 318.384 kb on + strand at 318.384 kb on + strand at 318.384 kb on + strand at 318.385 kb on - strand at 318.385 kb on - strand at 318.385 kb on - strand at 318.388 kb on + strand at 318.388 kb on + strand at 318.389 kb on - strand at 318.389 kb on - strand at 318.410 kb on + strand at 318.410 kb on + strand at 318.410 kb on + strand at 318.410 kb on + strand at 318.411 kb on - strand at 318.411 kb on - strand at 318.463 kb on + strand, within IAI47_20395 at 318.504 kb on - strand, within IAI47_20395 at 318.504 kb on - strand, within IAI47_20395 at 318.523 kb on - strand, within IAI47_20395 at 318.524 kb on + strand, within IAI47_20395 at 318.524 kb on + strand, within IAI47_20395 at 318.525 kb on - strand, within IAI47_20395 at 318.525 kb on - strand, within IAI47_20395 at 318.622 kb on + strand, within IAI47_20395 at 318.677 kb on - strand, within IAI47_20395 at 318.689 kb on - strand, within IAI47_20395 at 318.750 kb on + strand, within IAI47_20395 at 318.750 kb on + strand, within IAI47_20395 at 318.805 kb on - strand, within IAI47_20395 at 318.833 kb on + strand, within IAI47_20395 at 318.833 kb on + strand, within IAI47_20395 at 318.833 kb on + strand, within IAI47_20395 at 318.859 kb on - strand, within IAI47_20395 at 318.859 kb on - strand, within IAI47_20395 at 318.859 kb on - strand, within IAI47_20395 at 318.859 kb on - strand, within IAI47_20395 at 318.859 kb on - strand, within IAI47_20395 at 318.859 kb on - strand, within IAI47_20395 at 318.860 kb on + strand, within IAI47_20395 at 318.861 kb on - strand, within IAI47_20395 at 318.861 kb on - strand, within IAI47_20395 at 318.861 kb on - strand, within IAI47_20395 at 318.894 kb on + strand, within IAI47_20395 at 318.895 kb on - strand, within IAI47_20395 at 318.946 kb on + strand, within IAI47_20395 at 318.969 kb on + strand, within IAI47_20395 at 318.969 kb on + strand, within IAI47_20395 at 318.969 kb on + strand, within IAI47_20395 at 318.969 kb on + strand, within IAI47_20395 at 318.995 kb on - strand, within IAI47_20395 at 319.141 kb on - strand, within IAI47_20395 at 319.160 kb on + strand, within IAI47_20395 at 319.160 kb on + strand, within IAI47_20395 at 319.161 kb on - strand, within IAI47_20395 at 319.161 kb on - strand, within IAI47_20395 at 319.161 kb on - strand, within IAI47_20395 at 319.217 kb on + strand, within IAI47_20395 at 319.235 kb on - strand, within IAI47_20395 at 319.358 kb on - strand, within IAI47_20395 at 319.358 kb on - strand, within IAI47_20395 at 319.445 kb on + strand, within IAI47_20395 at 319.445 kb on + strand, within IAI47_20395 at 319.445 kb on + strand, within IAI47_20395 at 319.445 kb on + strand, within IAI47_20395 at 319.445 kb on + strand, within IAI47_20395 at 319.445 kb on + strand, within IAI47_20395 at 319.445 kb on + strand, within IAI47_20395 at 319.445 kb on + strand, within IAI47_20395 at 319.445 kb on + strand, within IAI47_20395 at 319.445 kb on + strand, within IAI47_20395 at 319.446 kb on - strand, within IAI47_20395 at 319.446 kb on - strand, within IAI47_20395 at 319.446 kb on - strand, within IAI47_20395 at 319.446 kb on - strand, within IAI47_20395 at 319.446 kb on - strand, within IAI47_20395 at 319.446 kb on - strand, within IAI47_20395 at 319.506 kb on + strand at 319.507 kb on - strand at 319.507 kb on - strand at 319.526 kb on + strand at 319.646 kb on + strand at 319.646 kb on + strand at 319.646 kb on + strand at 319.647 kb on - strand at 319.665 kb on + strand at 319.665 kb on + strand at 319.665 kb on + strand at 319.671 kb on + strand at 319.672 kb on - strand at 319.672 kb on - strand at 319.728 kb on + strand at 319.728 kb on + strand at 319.728 kb on + strand at 319.728 kb on + strand at 319.729 kb on - strand at 319.729 kb on - strand at 319.729 kb on - strand at 319.729 kb on - strand at 319.791 kb on - strand at 319.831 kb on + strand at 319.832 kb on - strand at 319.835 kb on - strand at 319.893 kb on + strand, within IAI47_20400 at 319.894 kb on - strand, within IAI47_20400 at 319.901 kb on + strand, within IAI47_20400 at 319.901 kb on + strand, within IAI47_20400 at 319.913 kb on - strand, within IAI47_20400 at 319.913 kb on - strand, within IAI47_20400 at 319.947 kb on + strand, within IAI47_20400 at 319.947 kb on + strand, within IAI47_20400 at 319.947 kb on + strand, within IAI47_20400 at 319.947 kb on + strand, within IAI47_20400 at 319.947 kb on + strand, within IAI47_20400 at 319.947 kb on + strand, within IAI47_20400 at 319.947 kb on + strand, within IAI47_20400 at 319.947 kb on + strand, within IAI47_20400 at 319.948 kb on - strand, within IAI47_20400 at 319.948 kb on - strand, within IAI47_20400 at 319.948 kb on - strand, within IAI47_20400 at 319.956 kb on + strand, within IAI47_20400 at 319.956 kb on + strand, within IAI47_20400 at 319.957 kb on - strand, within IAI47_20400 at 319.957 kb on - strand, within IAI47_20400 at 319.974 kb on + strand, within IAI47_20400 at 319.994 kb on + strand, within IAI47_20400 at 320.001 kb on + strand, within IAI47_20400 at 320.002 kb on - strand, within IAI47_20400 at 320.035 kb on + strand, within IAI47_20400 at 320.036 kb on - strand, within IAI47_20400 at 320.048 kb on + strand, within IAI47_20400 at 320.048 kb on + strand, within IAI47_20400 at 320.048 kb on + strand, within IAI47_20400 at 320.144 kb on - strand at 320.144 kb on - strand at 320.144 kb on - strand at 320.144 kb on - strand at 320.146 kb on + strand at 320.146 kb on + strand at 320.182 kb on + strand at 320.392 kb on + strand, within IAI47_20405 at 320.393 kb on - strand, within IAI47_20405 at 320.393 kb on - strand, within IAI47_20405 at 320.393 kb on - strand, within IAI47_20405 at 320.438 kb on + strand, within IAI47_20405 at 320.439 kb on - strand, within IAI47_20405 at 320.439 kb on - strand, within IAI47_20405 at 320.439 kb on - strand, within IAI47_20405 at 320.481 kb on - strand, within IAI47_20405 at 320.582 kb on + strand, within IAI47_20405 at 320.582 kb on + strand, within IAI47_20405
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3 remove 317,344 - IAI47_20385 0.59 +0.1 317,391 - IAI47_20385 0.63 -0.2 317,449 - IAI47_20385 0.67 -0.5 317,449 - IAI47_20385 0.67 +1.1 317,475 + IAI47_20385 0.68 +1.1 317,475 + IAI47_20385 0.68 -0.9 317,476 - IAI47_20385 0.68 -1.2 317,476 - IAI47_20385 0.68 +1.3 317,601 + IAI47_20385 0.77 -0.8 317,602 - IAI47_20385 0.77 +0.7 317,652 + IAI47_20385 0.80 +0.5 317,652 + IAI47_20385 0.80 -0.9 317,652 + IAI47_20385 0.80 +0.9 317,652 + IAI47_20385 0.80 -0.1 317,653 - IAI47_20385 0.80 -1.5 317,684 - IAI47_20385 0.83 +0.1 317,778 - IAI47_20385 0.89 +1.9 317,888 + -0.4 317,889 - +1.3 317,889 - -1.6 317,889 - -0.3 317,937 + -0.5 317,937 + +1.1 317,938 - -1.5 318,151 + -3.3 318,178 + -0.9 318,178 + -0.4 318,179 - -0.2 318,179 - +0.5 318,190 + -0.0 318,190 + -0.1 318,190 + +0.6 318,191 - -1.3 318,191 - +1.0 318,191 - +0.8 318,191 - +0.1 318,192 + -0.3 318,192 + -0.4 318,192 + -1.3 318,192 + +1.1 318,192 + +0.7 318,192 + -0.1 318,192 + -0.9 318,192 + -0.7 318,193 - -0.6 318,193 - -0.2 318,193 - +0.7 318,193 - +0.1 318,193 - +0.2 318,193 - +0.4 318,193 - -0.2 318,194 + +0.6 318,194 + +0.4 318,194 + -0.3 318,194 + +0.1 318,194 + +0.2 318,194 + +0.4 318,195 - +0.6 318,195 - +1.1 318,195 - +0.1 318,195 - -1.2 318,213 + -0.3 318,257 + -0.1 318,257 + +2.4 318,257 + +0.3 318,257 + -0.1 318,257 + -0.9 318,258 - +0.8 318,258 - -0.1 318,258 - -0.9 318,258 - +1.7 318,258 - +0.1 318,258 - +0.1 318,258 - +0.4 318,360 + +0.1 318,361 - -0.6 318,384 + -0.9 318,384 + -1.2 318,384 + +1.1 318,385 - +0.5 318,385 - -0.3 318,385 - +0.1 318,388 + -0.8 318,388 + +0.1 318,389 - +0.2 318,389 - +0.4 318,410 + +0.4 318,410 + -0.2 318,410 + -0.9 318,410 + +0.3 318,411 - -1.9 318,411 - +2.9 318,463 + IAI47_20395 0.11 +0.7 318,504 - IAI47_20395 0.14 -0.3 318,504 - IAI47_20395 0.14 +1.1 318,523 - IAI47_20395 0.16 -0.1 318,524 + IAI47_20395 0.16 +0.1 318,524 + IAI47_20395 0.16 -0.3 318,525 - IAI47_20395 0.16 -0.2 318,525 - IAI47_20395 0.16 -1.0 318,622 + IAI47_20395 0.23 -1.1 318,677 - IAI47_20395 0.27 -0.0 318,689 - IAI47_20395 0.28 -0.5 318,750 + IAI47_20395 0.33 -0.9 318,750 + IAI47_20395 0.33 -0.0 318,805 - IAI47_20395 0.37 -0.2 318,833 + IAI47_20395 0.39 +1.7 318,833 + IAI47_20395 0.39 +0.3 318,833 + IAI47_20395 0.39 -0.5 318,859 - IAI47_20395 0.41 +0.4 318,859 - IAI47_20395 0.41 -0.5 318,859 - IAI47_20395 0.41 +1.1 318,859 - IAI47_20395 0.41 +0.6 318,859 - IAI47_20395 0.41 -1.6 318,859 - IAI47_20395 0.41 +1.3 318,860 + IAI47_20395 0.41 +0.8 318,861 - IAI47_20395 0.41 -0.2 318,861 - IAI47_20395 0.41 -0.2 318,861 - IAI47_20395 0.41 +0.8 318,894 + IAI47_20395 0.44 -0.6 318,895 - IAI47_20395 0.44 +0.1 318,946 + IAI47_20395 0.48 -0.1 318,969 + IAI47_20395 0.50 -0.5 318,969 + IAI47_20395 0.50 -0.2 318,969 + IAI47_20395 0.50 +1.7 318,969 + IAI47_20395 0.50 +0.1 318,995 - IAI47_20395 0.52 -1.7 319,141 - IAI47_20395 0.63 -1.5 319,160 + IAI47_20395 0.64 -0.5 319,160 + IAI47_20395 0.64 -1.5 319,161 - IAI47_20395 0.64 -0.2 319,161 - IAI47_20395 0.64 -0.4 319,161 - IAI47_20395 0.64 +2.0 319,217 + IAI47_20395 0.69 +1.1 319,235 - IAI47_20395 0.70 -1.1 319,358 - IAI47_20395 0.79 +0.9 319,358 - IAI47_20395 0.79 +0.7 319,445 + IAI47_20395 0.86 +0.7 319,445 + IAI47_20395 0.86 +0.2 319,445 + IAI47_20395 0.86 +0.9 319,445 + IAI47_20395 0.86 +1.0 319,445 + IAI47_20395 0.86 +0.6 319,445 + IAI47_20395 0.86 +1.9 319,445 + IAI47_20395 0.86 +0.1 319,445 + IAI47_20395 0.86 -0.1 319,445 + IAI47_20395 0.86 +0.4 319,445 + IAI47_20395 0.86 +0.8 319,446 - IAI47_20395 0.86 -0.9 319,446 - IAI47_20395 0.86 +0.0 319,446 - IAI47_20395 0.86 +0.1 319,446 - IAI47_20395 0.86 +0.3 319,446 - IAI47_20395 0.86 -0.6 319,446 - IAI47_20395 0.86 +0.8 319,506 + +0.4 319,507 - -1.7 319,507 - +0.1 319,526 + -0.0 319,646 + +0.1 319,646 + -1.5 319,646 + +0.1 319,647 - -1.3 319,665 + -0.6 319,665 + +0.6 319,665 + -0.9 319,671 + +0.8 319,672 - -2.2 319,672 - -0.1 319,728 + +1.8 319,728 + -0.2 319,728 + +1.1 319,728 + +0.0 319,729 - +0.7 319,729 - +0.1 319,729 - -0.7 319,729 - +1.0 319,791 - -0.2 319,831 + +1.0 319,832 - -0.3 319,835 - +0.1 319,893 + IAI47_20400 0.18 +0.4 319,894 - IAI47_20400 0.18 -1.2 319,901 + IAI47_20400 0.21 +0.8 319,901 + IAI47_20400 0.21 -1.7 319,913 - IAI47_20400 0.25 +1.1 319,913 - IAI47_20400 0.25 +2.4 319,947 + IAI47_20400 0.36 +1.1 319,947 + IAI47_20400 0.36 -0.3 319,947 + IAI47_20400 0.36 -0.1 319,947 + IAI47_20400 0.36 -0.0 319,947 + IAI47_20400 0.36 -1.6 319,947 + IAI47_20400 0.36 -0.8 319,947 + IAI47_20400 0.36 +0.4 319,947 + IAI47_20400 0.36 -1.0 319,948 - IAI47_20400 0.36 -0.1 319,948 - IAI47_20400 0.36 +0.9 319,948 - IAI47_20400 0.36 -0.5 319,956 + IAI47_20400 0.39 +0.5 319,956 + IAI47_20400 0.39 +0.5 319,957 - IAI47_20400 0.39 +0.4 319,957 - IAI47_20400 0.39 +1.1 319,974 + IAI47_20400 0.44 -0.1 319,994 + IAI47_20400 0.51 -0.1 320,001 + IAI47_20400 0.53 +0.8 320,002 - IAI47_20400 0.53 +0.1 320,035 + IAI47_20400 0.64 +0.1 320,036 - IAI47_20400 0.64 -0.1 320,048 + IAI47_20400 0.68 +1.0 320,048 + IAI47_20400 0.68 -0.2 320,048 + IAI47_20400 0.68 +0.5 320,144 - -0.0 320,144 - -0.3 320,144 - -0.5 320,144 - +0.1 320,146 + +1.4 320,146 + -0.2 320,182 + -0.6 320,392 + IAI47_20405 0.11 -1.2 320,393 - IAI47_20405 0.11 +0.7 320,393 - IAI47_20405 0.11 -0.3 320,393 - IAI47_20405 0.11 +0.8 320,438 + IAI47_20405 0.13 -1.1 320,439 - IAI47_20405 0.13 +0.1 320,439 - IAI47_20405 0.13 -0.2 320,439 - IAI47_20405 0.13 +0.1 320,481 - IAI47_20405 0.16 +1.7 320,582 + IAI47_20405 0.22 +0.1 320,582 + IAI47_20405 0.22 +0.1
Or see this region's nucleotide sequence