Strain Fitness in Pantoea sp. MT58 around IAI47_19445

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
117,141	+		IAI47_19440	0.18	-1.4
117,142	-		IAI47_19440	0.18	+0.4
117,168	+		IAI47_19440	0.21	-0.3
117,169	-		IAI47_19440	0.21	-0.6
117,173	+		IAI47_19440	0.21	+0.7
117,173	+		IAI47_19440	0.21	+0.6
117,285	+		IAI47_19440	0.32	-0.3
117,285	+		IAI47_19440	0.32	-0.1
117,285	+		IAI47_19440	0.32	+0.1
117,286	-		IAI47_19440	0.32	-0.5
117,286	-		IAI47_19440	0.32	-1.6
117,288	+		IAI47_19440	0.32	+0.6
117,375	+		IAI47_19440	0.40	+0.4
117,375	+		IAI47_19440	0.40	+0.5
117,375	+		IAI47_19440	0.40	-0.1
117,376	-		IAI47_19440	0.40	-0.3
117,410	-		IAI47_19440	0.43	+0.1
117,410	-		IAI47_19440	0.43	+0.1
117,410	-		IAI47_19440	0.43	+0.7
117,410	-		IAI47_19440	0.43	+1.0
117,410	-		IAI47_19440	0.43	-0.9
117,443	+		IAI47_19440	0.47	+0.3
117,443	+		IAI47_19440	0.47	+0.3
117,443	+		IAI47_19440	0.47	+0.4
117,443	+		IAI47_19440	0.47	-0.0
117,443	+		IAI47_19440	0.47	+1.9
117,443	+		IAI47_19440	0.47	-0.3
117,443	+		IAI47_19440	0.47	-0.2
117,443	+		IAI47_19440	0.47	-0.8
117,443	+		IAI47_19440	0.47	+0.1
117,444	-		IAI47_19440	0.47	+0.6
117,444	-		IAI47_19440	0.47	+0.3
117,444	-		IAI47_19440	0.47	+0.6
117,444	-		IAI47_19440	0.47	-0.1
117,534	+		IAI47_19440	0.55	+1.1
117,624	+		IAI47_19440	0.64	-0.3
117,647	+		IAI47_19440	0.66	+0.6
117,647	+		IAI47_19440	0.66	+0.9
117,648	-		IAI47_19440	0.66	+1.6
117,648	-		IAI47_19440	0.66	+0.7
117,648	-		IAI47_19440	0.66	-0.1
117,656	+		IAI47_19440	0.67	+1.4
117,656	+		IAI47_19440	0.67	+0.1
117,657	-		IAI47_19440	0.67	-1.1
117,973	+				-0.6
117,974	-				-0.4
117,974	-				+0.1
118,023	+				-0.5
118,023	+				+0.7
118,024	-				-0.4
118,063	+				-0.7
118,063	+				+0.5
118,064	-				+0.2
118,064	-				+1.5
118,082	-				-2.5
118,089	-				-0.3
118,104	-				+0.3
118,147	-				+1.1
118,246	-		IAI47_19445	0.16	-0.1
118,246	-		IAI47_19445	0.16	-0.0
118,254	+		IAI47_19445	0.16	+0.7
118,254	+		IAI47_19445	0.16	-0.3
118,255	-		IAI47_19445	0.17	-0.1
118,255	-		IAI47_19445	0.17	-0.1
118,301	+		IAI47_19445	0.22	+0.7
118,301	+		IAI47_19445	0.22	+0.7
118,301	+		IAI47_19445	0.22	+0.1
118,301	+		IAI47_19445	0.22	+0.1
118,301	+		IAI47_19445	0.22	+0.2
118,302	-		IAI47_19445	0.22	+1.4
118,302	-		IAI47_19445	0.22	+1.1
118,302	-		IAI47_19445	0.22	-0.6
118,302	-		IAI47_19445	0.22	-0.3
118,356	+		IAI47_19445	0.28	+1.1
118,356	+		IAI47_19445	0.28	+0.4
118,393	+		IAI47_19445	0.32	+0.1
118,393	+		IAI47_19445	0.32	-0.1
118,394	-		IAI47_19445	0.32	+1.1
118,477	+		IAI47_19445	0.41	-0.4
118,596	+		IAI47_19445	0.54	+1.5
118,596	+		IAI47_19445	0.54	+0.4
118,656	+		IAI47_19445	0.61	+0.8
118,656	+		IAI47_19445	0.61	-0.4
118,656	+		IAI47_19445	0.61	+0.1
118,657	-		IAI47_19445	0.61	-0.6
118,674	+		IAI47_19445	0.63	+0.9
118,674	+		IAI47_19445	0.63	-1.8
118,674	+		IAI47_19445	0.63	+0.9
118,674	+		IAI47_19445	0.63	+0.5
118,674	+		IAI47_19445	0.63	+0.7
118,674	+		IAI47_19445	0.63	-1.5
118,675	-		IAI47_19445	0.63	-0.5
118,675	-		IAI47_19445	0.63	+2.7
118,675	-		IAI47_19445	0.63	-0.2
118,681	+		IAI47_19445	0.64	+1.7
118,688	-		IAI47_19445	0.64	+0.6
118,765	+		IAI47_19445	0.73	-1.1
118,765	+		IAI47_19445	0.73	+0.1
118,765	+		IAI47_19445	0.73	+1.3
118,766	-		IAI47_19445	0.73	+2.2
118,766	-		IAI47_19445	0.73	-0.9
118,821	+		IAI47_19445	0.79	-0.4
118,822	-		IAI47_19445	0.79	+0.8
118,876	-		IAI47_19445	0.85	+0.2
118,902	-		IAI47_19445	0.88	-0.9
118,907	+		IAI47_19445	0.89	+0.5
118,907	+		IAI47_19445	0.89	+1.1
118,908	-		IAI47_19445	0.89	+0.6
118,908	-		IAI47_19445	0.89	+1.4
118,934	-				-1.7
118,934	-				+0.6
118,942	+				-2.7
118,943	-				-0.5
118,943	-				+1.5
118,951	+				+0.8
118,951	+				+0.3
118,951	+				-0.6
118,952	-				-0.7
118,952	-				+1.1
118,981	-				-0.5
118,981	-				+0.3
119,006	+				+0.1
119,006	+				-0.7
119,007	-				-0.5
119,016	-				+1.1
119,016	-				+1.0
119,028	+				+1.9
119,028	+				-0.7
119,028	+				-0.2
119,028	+				-0.1
119,028	+				-0.6
119,029	-				+0.8
119,046	+				+0.2
119,046	+				-1.3
119,046	+				-0.6
119,047	-				+2.7
119,047	-				+1.6
119,047	-				-0.0
119,047	-				-1.9
119,052	+				+0.1
119,052	+				+0.4
119,053	-				-0.9
119,053	-				+0.1
119,053	-				-0.9
119,079	+				+0.3
119,080	-				+1.5
119,080	-				+0.1
119,094	+				+1.6
119,094	+				-2.2
119,095	-				+0.9
119,139	+				+2.1
119,139	+				+0.1
119,139	+				+1.7
119,139	+				-0.4
119,139	+				-0.7
119,139	+				+0.5
119,139	+				+2.1
119,139	+				-0.4
119,140	-				+0.4
119,140	-				+0.3
119,140	-				-0.3
119,140	-				-0.1
119,207	-				-1.1
119,217	+				+1.7
119,217	+				+0.5
119,217	+				+0.7
119,218	-				-1.5
119,239	+				+0.7
119,240	-				+0.1
119,249	+				-2.7
119,250	-				-1.1
119,250	-				-1.5
119,274	+				-2.2
119,274	+				+0.1
119,275	-				-3.4
119,365	-		IAI47_19450	0.19	-1.6
119,385	+		IAI47_19450	0.22	-0.6
119,396	-		IAI47_19450	0.24	-0.2
119,423	+		IAI47_19450	0.28	-2.9
119,424	-		IAI47_19450	0.28	-1.6
119,541	+		IAI47_19450	0.46	-0.9
119,541	+		IAI47_19450	0.46	-3.2
119,542	-		IAI47_19450	0.46	-3.3
119,554	-		IAI47_19450	0.47	-1.6
119,577	-		IAI47_19450	0.51	+0.1
119,577	-		IAI47_19450	0.51	+0.1
119,577	-		IAI47_19450	0.51	-2.0
119,586	+		IAI47_19450	0.52	-1.2
119,586	+		IAI47_19450	0.52	-2.2
119,587	-		IAI47_19450	0.52	-0.6
119,597	-		IAI47_19450	0.54	-2.2
119,597	-		IAI47_19450	0.54	-0.9
119,597	-		IAI47_19450	0.54	-2.1
119,600	+		IAI47_19450	0.54	-0.9
119,600	+		IAI47_19450	0.54	-2.4
119,600	+		IAI47_19450	0.54	-1.5
119,600	+		IAI47_19450	0.54	-1.5
119,600	+		IAI47_19450	0.54	-1.5
119,600	+		IAI47_19450	0.54	-2.5
119,600	+		IAI47_19450	0.54	-0.9
119,600	+		IAI47_19450	0.54	-1.5
119,600	+		IAI47_19450	0.54	+0.1
119,600	+		IAI47_19450	0.54	-2.1
119,600	+		IAI47_19450	0.54	-2.2
119,601	-		IAI47_19450	0.54	-1.5
119,601	-		IAI47_19450	0.54	-2.2
119,601	-		IAI47_19450	0.54	-2.9
119,601	-		IAI47_19450	0.54	-1.9
119,601	-		IAI47_19450	0.54	-1.5
119,601	-		IAI47_19450	0.54	-2.5
119,601	-		IAI47_19450	0.54	-3.1
119,601	-		IAI47_19450	0.54	-0.5
119,601	-		IAI47_19450	0.54	-2.1
119,601	-		IAI47_19450	0.54	-2.2
119,601	-		IAI47_19450	0.54	-0.5
119,601	-		IAI47_19450	0.54	-1.9
119,601	-		IAI47_19450	0.54	-2.2
119,604	+		IAI47_19450	0.55	-0.9
119,604	+		IAI47_19450	0.55	-1.9
119,604	+		IAI47_19450	0.55	-0.9
119,604	+		IAI47_19450	0.55	-2.5
119,604	+		IAI47_19450	0.55	-1.5
119,604	+		IAI47_19450	0.55	-1.5
119,604	+		IAI47_19450	0.55	-2.6
119,604	+		IAI47_19450	0.55	-0.5
119,604	+		IAI47_19450	0.55	+0.5
119,604	+		IAI47_19450	0.55	-1.8
119,604	+		IAI47_19450	0.55	-0.7
119,604	+		IAI47_19450	0.55	-1.7
119,605	-		IAI47_19450	0.55	-2.1
119,605	-		IAI47_19450	0.55	-0.2
119,605	-		IAI47_19450	0.55	-1.5
119,605	-		IAI47_19450	0.55	-2.2
119,605	-				-2.2
119,605	-		IAI47_19450	0.55	-2.7
119,605	-		IAI47_19450	0.55	+0.1
119,605	-		IAI47_19450	0.55	+0.5
119,605	-		IAI47_19450	0.55	-2.2
119,605	-		IAI47_19450	0.55	-1.9
119,605	-		IAI47_19450	0.55	-0.6
119,606	+		IAI47_19450	0.55	-1.7
119,606	+		IAI47_19450	0.55	-1.8
119,606	+		IAI47_19450	0.55	-2.6
119,606	+		IAI47_19450	0.55	+0.1
119,607	-		IAI47_19450	0.55	-0.6
119,607	-		IAI47_19450	0.55	-1.1
119,607	-		IAI47_19450	0.55	-2.6
119,612	+		IAI47_19450	0.56	-1.8
119,613	-		IAI47_19450	0.56	-1.5
119,613	-		IAI47_19450	0.56	-1.7
119,662	+		IAI47_19450	0.64	-2.1
119,662	+		IAI47_19450	0.64	+0.1
119,730	-		IAI47_19450	0.74	-1.9
119,744	+		IAI47_19450	0.76	-0.5
119,744	+		IAI47_19450	0.76	+1.1
119,744	+		IAI47_19450	0.76	-1.5
119,744	+		IAI47_19450	0.76	-2.7
119,744	+		IAI47_19450	0.76	+0.1
119,744	+		IAI47_19450	0.76	-0.9
119,744	+		IAI47_19450	0.76	-2.5
119,744	+		IAI47_19450	0.76	-1.9
119,745	-		IAI47_19450	0.76	-0.9
119,745	-		IAI47_19450	0.76	-1.5
119,783	+		IAI47_19450	0.82	-2.7
119,783	+		IAI47_19450	0.82	-0.5
119,784	-		IAI47_19450	0.82	-0.9
119,835	+		IAI47_19450	0.89	-2.9
119,835	+		IAI47_19450	0.89	-1.1
119,835	+		IAI47_19450	0.89	-2.3
119,835	+		IAI47_19450	0.89	-0.5
119,835	+		IAI47_19450	0.89	-0.7
119,836	-		IAI47_19450	0.89	-0.9
119,836	-		IAI47_19450	0.89	-1.1
119,836	-		IAI47_19450	0.89	-3.3
119,836	-		IAI47_19450	0.89	-2.2
119,836	-		IAI47_19450	0.89	+0.4
119,837	+		IAI47_19450	0.90	-1.2
119,837	+		IAI47_19450	0.90	-2.3
119,837	+		IAI47_19450	0.90	-2.7
119,837	+		IAI47_19450	0.90	-1.9
119,837	+		IAI47_19450	0.90	-1.9
119,837	+		IAI47_19450	0.90	+0.1
119,837	+		IAI47_19450	0.90	+0.1
119,838	-		IAI47_19450	0.90	+0.1
119,838	-		IAI47_19450	0.90	-2.1
119,838	-		IAI47_19450	0.90	-0.9
119,838	-		IAI47_19450	0.90	-1.5
119,838	-		IAI47_19450	0.90	-3.8
119,838	-		IAI47_19450	0.90	-1.0
119,838	-		IAI47_19450	0.90	-0.9
119,889	+				-0.1
119,889	+				-0.7
119,890	-				-0.3
119,890	-				-0.3
119,904	+				-0.4
119,982	-				+0.1
119,989	+				+0.1
119,989	+				-0.5
120,008	+				+0.9