Experiment: Ying_AminoAcid20 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19380 and IAI47_19385 are separated by 698 nucleotides IAI47_19385 and IAI47_19390 overlap by 4 nucleotides IAI47_19390 and IAI47_19395 overlap by 4 nucleotides
IAI47_19380: IAI47_19380 - hypothetical protein, at 101,863 to 102,426
_19380
IAI47_19385: IAI47_19385 - (2Fe-2S)-binding protein, at 103,125 to 103,589
_19385
IAI47_19390: IAI47_19390 - xanthine dehydrogenase family protein subunit M, at 103,586 to 104,578
_19390
IAI47_19395: IAI47_19395 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 104,575 to 106,884
_19395
Position (kb) 103
104 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 102.129 kb on - strand, within IAI47_19380 at 102.145 kb on - strand, within IAI47_19380 at 102.172 kb on - strand, within IAI47_19380 at 102.314 kb on - strand, within IAI47_19380 at 102.377 kb on - strand at 102.379 kb on - strand at 102.412 kb on - strand at 102.471 kb on + strand at 102.485 kb on + strand at 102.485 kb on + strand at 102.486 kb on - strand at 102.486 kb on - strand at 102.488 kb on + strand at 102.488 kb on + strand at 102.488 kb on + strand at 102.489 kb on - strand at 102.489 kb on - strand at 102.504 kb on - strand at 102.529 kb on + strand at 102.530 kb on - strand at 102.532 kb on + strand at 102.533 kb on - strand at 102.533 kb on - strand at 102.575 kb on - strand at 102.580 kb on + strand at 102.593 kb on + strand at 102.607 kb on + strand at 102.607 kb on + strand at 102.607 kb on + strand at 102.608 kb on - strand at 102.612 kb on + strand at 102.612 kb on + strand at 102.612 kb on + strand at 102.613 kb on - strand at 102.613 kb on - strand at 102.705 kb on + strand at 102.706 kb on - strand at 102.706 kb on - strand at 102.710 kb on + strand at 102.710 kb on + strand at 102.710 kb on + strand at 102.710 kb on + strand at 102.711 kb on - strand at 102.711 kb on - strand at 102.711 kb on - strand at 102.724 kb on + strand at 102.725 kb on - strand at 102.725 kb on - strand at 102.747 kb on + strand at 102.747 kb on + strand at 102.784 kb on + strand at 102.802 kb on - strand at 102.837 kb on + strand at 102.837 kb on + strand at 102.838 kb on - strand at 102.838 kb on - strand at 102.838 kb on - strand at 102.838 kb on - strand at 102.887 kb on + strand at 102.933 kb on - strand at 102.945 kb on + strand at 102.979 kb on + strand at 102.997 kb on + strand at 102.997 kb on + strand at 102.997 kb on + strand at 102.997 kb on + strand at 102.998 kb on - strand at 102.998 kb on - strand at 102.998 kb on - strand at 103.005 kb on + strand at 103.005 kb on + strand at 103.019 kb on - strand at 103.055 kb on + strand at 103.056 kb on - strand at 103.076 kb on - strand at 103.114 kb on + strand at 103.114 kb on + strand at 103.114 kb on + strand at 103.115 kb on - strand at 103.115 kb on - strand at 103.120 kb on + strand at 103.121 kb on - strand at 103.203 kb on - strand, within IAI47_19385 at 103.214 kb on + strand, within IAI47_19385 at 103.385 kb on + strand, within IAI47_19385 at 103.413 kb on + strand, within IAI47_19385 at 103.433 kb on + strand, within IAI47_19385 at 103.433 kb on + strand, within IAI47_19385 at 103.433 kb on + strand, within IAI47_19385 at 103.433 kb on + strand, within IAI47_19385 at 103.433 kb on + strand, within IAI47_19385 at 103.433 kb on + strand, within IAI47_19385 at 103.434 kb on - strand, within IAI47_19385 at 103.452 kb on - strand, within IAI47_19385 at 103.452 kb on - strand, within IAI47_19385 at 103.494 kb on + strand, within IAI47_19385 at 103.494 kb on + strand, within IAI47_19385 at 103.494 kb on + strand, within IAI47_19385 at 103.494 kb on + strand, within IAI47_19385 at 103.494 kb on + strand, within IAI47_19385 at 103.494 kb on + strand, within IAI47_19385 at 103.494 kb on + strand, within IAI47_19385 at 103.495 kb on - strand, within IAI47_19385 at 103.495 kb on - strand, within IAI47_19385 at 103.495 kb on - strand, within IAI47_19385 at 103.495 kb on - strand, within IAI47_19385 at 103.495 kb on - strand, within IAI47_19385 at 103.495 kb on - strand, within IAI47_19385 at 103.495 kb on - strand, within IAI47_19385 at 103.496 kb on + strand, within IAI47_19385 at 103.496 kb on + strand, within IAI47_19385 at 103.496 kb on + strand, within IAI47_19385 at 103.496 kb on + strand, within IAI47_19385 at 103.496 kb on + strand, within IAI47_19385 at 103.496 kb on + strand, within IAI47_19385 at 103.496 kb on + strand, within IAI47_19385 at 103.496 kb on + strand, within IAI47_19385 at 103.497 kb on - strand, within IAI47_19385 at 103.497 kb on - strand, within IAI47_19385 at 103.497 kb on - strand, within IAI47_19385 at 103.497 kb on - strand, within IAI47_19385 at 103.497 kb on - strand, within IAI47_19385 at 103.497 kb on - strand, within IAI47_19385 at 103.497 kb on - strand, within IAI47_19385 at 103.640 kb on - strand at 103.726 kb on - strand, within IAI47_19390 at 103.726 kb on - strand, within IAI47_19390 at 103.743 kb on + strand, within IAI47_19390 at 103.743 kb on + strand, within IAI47_19390 at 103.753 kb on + strand, within IAI47_19390 at 103.778 kb on - strand, within IAI47_19390 at 103.856 kb on + strand, within IAI47_19390 at 103.894 kb on + strand, within IAI47_19390 at 103.895 kb on - strand, within IAI47_19390 at 103.895 kb on - strand, within IAI47_19390 at 103.898 kb on - strand, within IAI47_19390 at 103.898 kb on - strand, within IAI47_19390 at 103.898 kb on - strand, within IAI47_19390 at 103.898 kb on - strand, within IAI47_19390 at 103.920 kb on + strand, within IAI47_19390 at 103.920 kb on + strand, within IAI47_19390 at 103.930 kb on + strand, within IAI47_19390 at 103.944 kb on - strand, within IAI47_19390 at 103.946 kb on + strand, within IAI47_19390 at 103.966 kb on + strand, within IAI47_19390 at 103.967 kb on - strand, within IAI47_19390 at 103.976 kb on - strand, within IAI47_19390 at 104.225 kb on - strand, within IAI47_19390 at 104.273 kb on + strand, within IAI47_19390 at 104.274 kb on - strand, within IAI47_19390 at 104.278 kb on + strand, within IAI47_19390 at 104.301 kb on - strand, within IAI47_19390 at 104.301 kb on - strand, within IAI47_19390 at 104.301 kb on - strand, within IAI47_19390 at 104.368 kb on + strand, within IAI47_19390 at 104.443 kb on + strand, within IAI47_19390 at 104.444 kb on - strand, within IAI47_19390 at 104.513 kb on + strand at 104.514 kb on - strand at 104.514 kb on - strand at 104.514 kb on - strand at 104.514 kb on - strand at 104.515 kb on + strand at 104.515 kb on + strand at 104.515 kb on + strand at 104.516 kb on - strand at 104.516 kb on - strand at 104.585 kb on + strand at 104.586 kb on - strand at 104.586 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3 remove 102,129 - IAI47_19380 0.47 -0.5 102,145 - IAI47_19380 0.50 +1.3 102,172 - IAI47_19380 0.55 -0.4 102,314 - IAI47_19380 0.80 +1.1 102,377 - -0.3 102,379 - -0.3 102,412 - +0.5 102,471 + -0.2 102,485 + -0.0 102,485 + +1.1 102,486 - -0.9 102,486 - +1.7 102,488 + +1.1 102,488 + +0.1 102,488 + -0.1 102,489 - +1.1 102,489 - -0.3 102,504 - -0.2 102,529 + +0.8 102,530 - +0.6 102,532 + -1.9 102,533 - +0.3 102,533 - +0.2 102,575 - -0.8 102,580 + -0.3 102,593 + -0.9 102,607 + +0.7 102,607 + -0.1 102,607 + +2.8 102,608 - +1.6 102,612 + -1.2 102,612 + +1.3 102,612 + +0.1 102,613 - +2.1 102,613 - +1.1 102,705 + -2.2 102,706 - -0.3 102,706 - +0.1 102,710 + +0.3 102,710 + -0.4 102,710 + +0.7 102,710 + -0.4 102,711 - +0.4 102,711 - +0.6 102,711 - +0.7 102,724 + +1.1 102,725 - -0.9 102,725 - +1.4 102,747 + +0.4 102,747 + -1.1 102,784 + +0.4 102,802 - -1.1 102,837 + +1.3 102,837 + -1.0 102,838 - +0.0 102,838 - -2.1 102,838 - +2.1 102,838 - +0.1 102,887 + -0.1 102,933 - +1.1 102,945 + +0.1 102,979 + -1.1 102,997 + +1.7 102,997 + -1.3 102,997 + +0.7 102,997 + +1.9 102,998 - -0.5 102,998 - +1.3 102,998 - -0.3 103,005 + +1.0 103,005 + -0.9 103,019 - +0.1 103,055 + +0.9 103,056 - -1.9 103,076 - +0.4 103,114 + -0.5 103,114 + -0.7 103,114 + +1.3 103,115 - +0.4 103,115 - +0.7 103,120 + +0.4 103,121 - -2.7 103,203 - IAI47_19385 0.17 -0.2 103,214 + IAI47_19385 0.19 +0.9 103,385 + IAI47_19385 0.56 +0.5 103,413 + IAI47_19385 0.62 +0.1 103,433 + IAI47_19385 0.66 -0.6 103,433 + IAI47_19385 0.66 -1.1 103,433 + IAI47_19385 0.66 +0.5 103,433 + IAI47_19385 0.66 +1.1 103,433 + IAI47_19385 0.66 +0.7 103,433 + IAI47_19385 0.66 -0.1 103,434 - IAI47_19385 0.66 -0.9 103,452 - IAI47_19385 0.70 +1.1 103,452 - IAI47_19385 0.70 +2.2 103,494 + IAI47_19385 0.79 +1.0 103,494 + IAI47_19385 0.79 -1.9 103,494 + IAI47_19385 0.79 +0.1 103,494 + IAI47_19385 0.79 +0.6 103,494 + IAI47_19385 0.79 -0.1 103,494 + IAI47_19385 0.79 -0.9 103,494 + IAI47_19385 0.79 +1.3 103,495 - IAI47_19385 0.80 +0.3 103,495 - IAI47_19385 0.80 -1.2 103,495 - IAI47_19385 0.80 -0.6 103,495 - IAI47_19385 0.80 +0.7 103,495 - IAI47_19385 0.80 +0.7 103,495 - IAI47_19385 0.80 +0.2 103,495 - IAI47_19385 0.80 +0.1 103,496 + IAI47_19385 0.80 -0.3 103,496 + IAI47_19385 0.80 -0.2 103,496 + IAI47_19385 0.80 +0.9 103,496 + IAI47_19385 0.80 +1.8 103,496 + IAI47_19385 0.80 -1.2 103,496 + IAI47_19385 0.80 -0.2 103,496 + IAI47_19385 0.80 +0.4 103,496 + IAI47_19385 0.80 -0.7 103,497 - IAI47_19385 0.80 -0.9 103,497 - IAI47_19385 0.80 +1.9 103,497 - IAI47_19385 0.80 +1.9 103,497 - IAI47_19385 0.80 +1.1 103,497 - IAI47_19385 0.80 -0.8 103,497 - IAI47_19385 0.80 -0.9 103,497 - IAI47_19385 0.80 +0.1 103,640 - +0.1 103,726 - IAI47_19390 0.14 +0.4 103,726 - IAI47_19390 0.14 +0.4 103,743 + IAI47_19390 0.16 -2.2 103,743 + IAI47_19390 0.16 +0.1 103,753 + IAI47_19390 0.17 -0.4 103,778 - IAI47_19390 0.19 +1.1 103,856 + IAI47_19390 0.27 +0.8 103,894 + IAI47_19390 0.31 +0.1 103,895 - IAI47_19390 0.31 +0.1 103,895 - IAI47_19390 0.31 -1.3 103,898 - IAI47_19390 0.31 +0.1 103,898 - IAI47_19390 0.31 -0.6 103,898 - IAI47_19390 0.31 +0.1 103,898 - IAI47_19390 0.31 +1.0 103,920 + IAI47_19390 0.34 +0.1 103,920 + IAI47_19390 0.34 +1.2 103,930 + IAI47_19390 0.35 -0.3 103,944 - IAI47_19390 0.36 +0.8 103,946 + IAI47_19390 0.36 +0.1 103,966 + IAI47_19390 0.38 -0.4 103,967 - IAI47_19390 0.38 -1.1 103,976 - IAI47_19390 0.39 +0.1 104,225 - IAI47_19390 0.64 +0.1 104,273 + IAI47_19390 0.69 +1.7 104,274 - IAI47_19390 0.69 +0.5 104,278 + IAI47_19390 0.70 +0.3 104,301 - IAI47_19390 0.72 -0.2 104,301 - IAI47_19390 0.72 +1.9 104,301 - IAI47_19390 0.72 +0.3 104,368 + IAI47_19390 0.79 +0.3 104,443 + IAI47_19390 0.86 -1.0 104,444 - IAI47_19390 0.86 -0.3 104,513 + -1.5 104,514 - +2.4 104,514 - +1.4 104,514 - +1.0 104,514 - +1.5 104,515 + -1.5 104,515 + -0.5 104,515 + +3.1 104,516 - +0.9 104,516 - +0.1 104,585 + +0.1 104,586 - +0.7 104,586 - +0.6
Or see this region's nucleotide sequence