Strain Fitness in Pantoea sp. MT58 around IAI47_19280

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
82,204	-		IAI47_19270	0.86	-0.3
82,204	-		IAI47_19270	0.86	+0.1
82,317	-				-0.5
82,333	+				-0.7
82,333	+				-1.0
82,333	+				-0.1
82,334	-				-0.4
82,334	-				+0.5
82,378	+				-0.2
82,379	-				-0.4
82,391	-				+0.7
82,458	-				+2.1
82,458	-				-0.1
82,458	-				+1.1
82,458	-				+0.6
82,466	+				-0.1
82,481	+				+0.3
82,482	-		IAI47_19275	0.10	+1.4
82,616	-		IAI47_19275	0.35	-2.2
82,623	+		IAI47_19275	0.36	-1.2
82,623	+		IAI47_19275	0.36	-0.9
82,623	+		IAI47_19275	0.36	+2.0
82,674	-		IAI47_19275	0.46	+1.1
82,674	-		IAI47_19275	0.46	+1.1
82,714	-		IAI47_19275	0.53	-0.5
82,714	-		IAI47_19275	0.53	+0.8
82,714	-		IAI47_19275	0.53	+0.1
82,714	-		IAI47_19275	0.53	-0.9
82,785	-		IAI47_19275	0.67	-0.2
82,787	+		IAI47_19275	0.67	+0.6
82,787	+		IAI47_19275	0.67	-0.7
82,788	-		IAI47_19275	0.67	-0.2
82,788	-		IAI47_19275	0.67	-0.4
82,788	-		IAI47_19275	0.67	-1.2
82,831	+		IAI47_19275	0.75	-0.4
82,832	-		IAI47_19275	0.76	+0.3
82,913	-				+0.5
82,913	-				-0.7
82,920	+				+1.8
82,921	-				-0.4
82,958	+				-0.5
82,958	+				-0.7
82,958	+				-0.6
82,958	+				-0.9
82,958	+				-0.5
82,958	+				-0.2
82,958	+				+0.3
82,959	-				-0.1
82,959	-				-1.5
82,959	-				+0.9
82,959	-				+0.1
82,962	+				-1.1
82,962	+				+0.0
82,962	+				+1.7
82,962	+				+0.7
82,962	+				-0.1
82,962	+				-1.2
82,962	+				+0.6
82,963	-				+3.1
82,963	-				+0.4
82,963	-				-0.9
82,963	-				+0.1
82,963	-				-0.6
83,005	+				-0.9
83,010	+				-0.8
83,011	-				+0.0
83,014	+				+0.5
83,015	-				+0.1
83,015	-				-0.3
83,015	-				-0.3
83,015	-				-0.1
83,015	-				+0.5
83,015	-				-0.5
83,015	-				+0.8
83,098	+				-0.6
83,099	-				+1.5
83,101	+				-0.4
83,101	+				+1.1
83,101	+				-0.5
83,101	+				+1.1
83,101	+				-0.9
83,102	-				+0.1
83,102	-				+1.1
83,102	-				+1.0
83,102	-				-0.9
83,102	-				+0.1
83,102	-				-0.6
83,198	+		IAI47_19280	0.11	-0.3
83,205	+		IAI47_19280	0.12	+1.1
83,206	-		IAI47_19280	0.12	+0.0
83,206	-		IAI47_19280	0.12	+1.4
83,235	+		IAI47_19280	0.14	-0.5
83,236	-		IAI47_19280	0.14	-0.1
83,236	-		IAI47_19280	0.14	-0.6
83,236	-		IAI47_19280	0.14	+1.0
83,268	+		IAI47_19280	0.16	-0.2
83,275	+		IAI47_19280	0.17	+1.0
83,275	+		IAI47_19280	0.17	+1.7
83,276	-		IAI47_19280	0.17	-0.4
83,344	+		IAI47_19280	0.22	+0.7
83,345	-		IAI47_19280	0.22	+0.4
83,345	-		IAI47_19280	0.22	-0.1
83,432	+		IAI47_19280	0.29	+0.6
83,432	+		IAI47_19280	0.29	+0.9
83,432	+		IAI47_19280	0.29	-1.9
83,432	+		IAI47_19280	0.29	+1.9
83,432	+		IAI47_19280	0.29	+0.9
83,433	-		IAI47_19280	0.29	+1.2
83,433	-		IAI47_19280	0.29	+0.4
83,433	-		IAI47_19280	0.29	-0.4
83,433	-		IAI47_19280	0.29	+0.1
83,433	-		IAI47_19280	0.29	+1.7
83,433	-		IAI47_19280	0.29	-0.5
83,500	-		IAI47_19280	0.34	+0.1
83,500	-		IAI47_19280	0.34	+0.7
83,520	+		IAI47_19280	0.36	+0.9
83,520	+		IAI47_19280	0.36	-0.9
83,537	-		IAI47_19280	0.37	-0.6
83,540	+		IAI47_19280	0.38	+1.1
83,541	+		IAI47_19280	0.38	+1.1
83,541	+		IAI47_19280	0.38	+0.1
83,541	+		IAI47_19280	0.38	-0.1
83,541	+		IAI47_19280	0.38	-0.5
83,541	+		IAI47_19280	0.38	+0.1
83,541	+		IAI47_19280	0.38	+0.2
83,541	+		IAI47_19280	0.38	-0.2
83,542	-		IAI47_19280	0.38	-1.8
83,542	-		IAI47_19280	0.38	+0.1
83,542	-		IAI47_19280	0.38	+0.1
83,542	-		IAI47_19280	0.38	-0.0
83,542	-		IAI47_19280	0.38	-1.5
83,542	-		IAI47_19280	0.38	-0.9
83,542	-		IAI47_19280	0.38	-0.5
83,542	-		IAI47_19280	0.38	-0.1
83,542	-		IAI47_19280	0.38	-0.2
83,565	+		IAI47_19280	0.40	+0.1
83,566	-		IAI47_19280	0.40	-1.1
83,566	-		IAI47_19280	0.40	+1.1
83,566	-		IAI47_19280	0.40	+1.2
83,566	-		IAI47_19280	0.40	+2.0
83,581	-		IAI47_19280	0.41	-0.5
83,656	-		IAI47_19280	0.47	+1.7
83,753	+		IAI47_19280	0.54	-2.2
83,753	+		IAI47_19280	0.54	-1.8
83,753	+		IAI47_19280	0.54	-0.2
83,754	-		IAI47_19280	0.54	+2.4
83,754	-		IAI47_19280	0.54	+1.7
83,754	-		IAI47_19280	0.54	-0.1
83,754	-		IAI47_19280	0.54	+1.7
83,754	-		IAI47_19280	0.54	-0.5
83,754	-		IAI47_19280	0.54	+0.1
83,754	-		IAI47_19280	0.54	-0.1
83,754	-		IAI47_19280	0.54	+0.7
83,765	+		IAI47_19280	0.55	+1.1
83,765	+		IAI47_19280	0.55	-1.1
83,765	+		IAI47_19280	0.55	-0.1
83,765	+		IAI47_19280	0.55	+0.5
83,765	+		IAI47_19280	0.55	-0.6
83,765	+		IAI47_19280	0.55	-0.9
83,765	+		IAI47_19280	0.55	-0.3
83,765	+		IAI47_19280	0.55	+0.4
83,765	+		IAI47_19280	0.55	+1.3
83,766	-		IAI47_19280	0.55	+1.1
83,766	-		IAI47_19280	0.55	+0.4
83,766	-		IAI47_19280	0.55	+0.1
83,766	-		IAI47_19280	0.55	+1.1
83,766	-		IAI47_19280	0.55	-1.9
83,766	-		IAI47_19280	0.55	+1.6
83,766	-		IAI47_19280	0.55	+0.8
83,766	-		IAI47_19280	0.55	-0.1
83,766	-		IAI47_19280	0.55	+0.3
83,766	-		IAI47_19280	0.55	-0.7
83,767	+		IAI47_19280	0.55	+1.0
83,767	+		IAI47_19280	0.55	+0.9
83,767	+		IAI47_19280	0.55	-0.0
83,767	+		IAI47_19280	0.55	+0.7
83,768	-		IAI47_19280	0.55	-0.0
83,768	-		IAI47_19280	0.55	+0.7
83,768	-		IAI47_19280	0.55	-1.1
83,768	-		IAI47_19280	0.55	-1.3
83,768	-		IAI47_19280	0.55	+0.8
83,768	-		IAI47_19280	0.55	+0.4
83,768	-		IAI47_19280	0.55	+1.1
83,768	-		IAI47_19280	0.55	+0.5
83,768	-		IAI47_19280	0.55	+0.5
83,790	+		IAI47_19280	0.57	-1.0
83,851	+		IAI47_19280	0.62	+0.4
83,852	-		IAI47_19280	0.62	+1.1
83,852	-		IAI47_19280	0.62	-1.1
83,935	-		IAI47_19280	0.68	-0.9
83,935	-		IAI47_19280	0.68	+2.1
83,960	+		IAI47_19280	0.70	+0.1
83,960	+		IAI47_19280	0.70	-0.9
83,981	+		IAI47_19280	0.72	+1.5
83,981	+		IAI47_19280	0.72	-0.1
83,981	+		IAI47_19280	0.72	+0.1
84,002	-		IAI47_19280	0.74	+0.3
84,034	+		IAI47_19280	0.76	-1.2
84,034	+		IAI47_19280	0.76	+0.7
84,034	+		IAI47_19280	0.76	+0.9
84,035	-		IAI47_19280	0.76	+0.0
84,035	-		IAI47_19280	0.76	+0.3
84,035	-		IAI47_19280	0.76	+0.3
84,057	-		IAI47_19280	0.78	+0.5
84,066	+		IAI47_19280	0.78	+0.6
84,066	+		IAI47_19280	0.78	+1.1
84,120	+		IAI47_19280	0.83	+0.1
84,121	-		IAI47_19280	0.83	+0.9
84,165	-		IAI47_19280	0.86	+0.4
84,194	+		IAI47_19280	0.88	-0.9
84,194	+		IAI47_19280	0.88	+0.9
84,195	-		IAI47_19280	0.89	+1.1
84,195	-		IAI47_19280	0.89	+0.6
84,195	-		IAI47_19280	0.89	+0.1
84,195	-		IAI47_19280	0.89	+0.5
84,198	+		IAI47_19280	0.89	+1.2
84,198	+		IAI47_19280	0.89	-0.4
84,198	+		IAI47_19280	0.89	-0.5
84,198	+		IAI47_19280	0.89	+0.8
84,198	+		IAI47_19280	0.89	+1.0
84,198	+		IAI47_19280	0.89	-0.1
84,198	+		IAI47_19280	0.89	-0.3
84,198	+		IAI47_19280	0.89	+0.7
84,198	+		IAI47_19280	0.89	+1.3
84,198	+		IAI47_19280	0.89	-1.3
84,198	+		IAI47_19280	0.89	-1.3
84,198	+		IAI47_19280	0.89	-0.5
84,198	+		IAI47_19280	0.89	+0.8
84,198	+		IAI47_19280	0.89	+0.2
84,198	+		IAI47_19280	0.89	+1.7
84,199	-		IAI47_19280	0.89	-0.0
84,199	-		IAI47_19280	0.89	+0.3
84,199	-		IAI47_19280	0.89	+0.5
84,199	-		IAI47_19280	0.89	-1.2
84,199	-		IAI47_19280	0.89	+0.0
84,199	-		IAI47_19280	0.89	-1.0
84,199	-		IAI47_19280	0.89	+1.2
84,199	-		IAI47_19280	0.89	-0.5
84,340	+				-0.6
84,340	+				+1.1
84,406	+				+0.4
84,406	+				+1.7
84,407	-				+1.4
84,407	-				-0.3
84,407	-				+0.1
84,407	-				-0.3
84,407	-				-1.5
84,414	+				-0.7
84,425	-				-0.5
84,427	+				-0.9
84,427	+				+0.9
84,427	+				-2.5
84,428	-				+2.7
84,438	+				-0.9
84,469	+				-0.4
84,506	+		IAI47_19285	0.11	-0.1
84,514	+		IAI47_19285	0.12	+1.1
84,515	-		IAI47_19285	0.12	-1.9
84,515	-		IAI47_19285	0.12	-0.3
84,612	+		IAI47_19285	0.26	+0.1
84,612	+		IAI47_19285	0.26	-0.2
84,612	+		IAI47_19285	0.26	-0.4
84,612	+		IAI47_19285	0.26	-0.7
84,612	+		IAI47_19285	0.26	+0.7
84,612	+		IAI47_19285	0.26	-0.4
84,612	+		IAI47_19285	0.26	+0.6
84,612	+		IAI47_19285	0.26	+1.3
84,613	-		IAI47_19285	0.26	+0.1
84,613	-		IAI47_19285	0.26	+0.1
84,613	-		IAI47_19285	0.26	+0.5
84,613	-		IAI47_19285	0.26	-0.6
84,613	-		IAI47_19285	0.26	+0.7
84,613	-		IAI47_19285	0.26	+0.0
84,613	-		IAI47_19285	0.26	-1.3
84,649	+		IAI47_19285	0.31	-1.8
84,650	-		IAI47_19285	0.31	-0.1
84,671	-		IAI47_19285	0.34	-0.2
84,687	+		IAI47_19285	0.36	-1.5
84,687	+		IAI47_19285	0.36	-0.3
84,688	-		IAI47_19285	0.36	+0.5
84,688	-		IAI47_19285	0.36	+0.0
84,688	-		IAI47_19285	0.36	-0.9
84,688	-		IAI47_19285	0.36	-0.7
84,710	+		IAI47_19285	0.39	+0.2
84,710	+		IAI47_19285	0.39	+1.1
84,710	+		IAI47_19285	0.39	-0.3
84,711	-		IAI47_19285	0.39	+0.4
84,711	-		IAI47_19285	0.39	+0.7
84,711	-		IAI47_19285	0.39	+1.1
84,711	-		IAI47_19285	0.39	+0.3
84,711	-		IAI47_19285	0.39	+0.4
84,711	-		IAI47_19285	0.39	+0.1
84,711	-		IAI47_19285	0.39	+0.5
84,712	+		IAI47_19285	0.40	+0.1
84,713	-		IAI47_19285	0.40	+0.2
84,713	-		IAI47_19285	0.40	+0.1
84,713	-		IAI47_19285	0.40	-0.4
84,713	-		IAI47_19285	0.40	-0.7
84,713	-		IAI47_19285	0.40	+0.8
84,738	+		IAI47_19285	0.43	+0.3
84,741	+		IAI47_19285	0.44	+0.1
84,741	+		IAI47_19285	0.44	+0.0
84,742	-		IAI47_19285	0.44	+1.1
84,757	+		IAI47_19285	0.46	+0.7
84,785	+		IAI47_19285	0.50	+0.3
84,785	+		IAI47_19285	0.50	+0.2
84,785	+		IAI47_19285	0.50	+1.1
84,786	-		IAI47_19285	0.50	+1.4
84,786	-		IAI47_19285	0.50	+0.5
84,835	+		IAI47_19285	0.57	+1.7
84,835	+		IAI47_19285	0.57	-0.1
84,836	-		IAI47_19285	0.57	-0.4
84,845	+		IAI47_19285	0.58	-0.5
84,845	+		IAI47_19285	0.58	-0.4
84,845	+		IAI47_19285	0.58	+0.1
84,845	+		IAI47_19285	0.58	+0.4
84,845	+		IAI47_19285	0.58	+0.9
84,845	+		IAI47_19285	0.58	+0.1
84,845	+		IAI47_19285	0.58	+1.9
84,845	+		IAI47_19285	0.58	-0.1
84,845	+		IAI47_19285	0.58	+0.8
84,845	+		IAI47_19285	0.58	+0.7
84,845	+		IAI47_19285	0.58	-0.2
84,846	-		IAI47_19285	0.58	+0.8
84,846	-		IAI47_19285	0.58	-1.2
84,846	-		IAI47_19285	0.58	+0.3
84,846	-		IAI47_19285	0.58	+1.1
84,846	-		IAI47_19285	0.58	+0.5
84,846	-		IAI47_19285	0.58	-0.9
84,846	-		IAI47_19285	0.58	-1.2
84,846	-		IAI47_19285	0.58	+0.1
84,846	-		IAI47_19285	0.58	+1.1
84,846	-		IAI47_19285	0.58	-0.1
84,848	+		IAI47_19285	0.59	+0.3
84,848	+		IAI47_19285	0.59	-0.1
84,848	+		IAI47_19285	0.59	-1.1
84,848	+		IAI47_19285	0.59	+2.1
84,849	-		IAI47_19285	0.59	+1.0
84,849	-		IAI47_19285	0.59	-0.1
84,849	-		IAI47_19285	0.59	+1.9
84,973	+		IAI47_19285	0.76	-0.9
84,988	+		IAI47_19285	0.78	+0.3
84,989	-		IAI47_19285	0.78	+1.1
85,027	+		IAI47_19285	0.84	+0.1
85,028	-		IAI47_19285	0.84	+0.2
85,028	-		IAI47_19285	0.84	+0.7
85,065	+		IAI47_19285	0.89	-0.5
85,066	-		IAI47_19285	0.89	+0.3
85,066	-		IAI47_19285	0.89	-0.5
85,075	+				-0.4
85,075	+				-0.3
85,075	+				-0.1
85,075	+				+1.1
85,076	-				+0.6
85,076	-				-0.2
85,076	-				+0.9
85,076	-				+0.1
85,076	-				-1.5
85,076	-				+0.7
85,076	-				-0.7
85,079	+				+0.6
85,079	+				-0.9
85,079	+				+1.1
85,079	+				-0.5
85,079	+				-0.4
85,079	+				+0.7
85,079	+				+0.9
85,079	+				+0.8
85,079	+				-0.1
85,079	+				-0.9
85,079	+				-0.0
85,079	+				+1.6
85,080	-				+0.6
85,080	-				+1.4
85,080	-				+0.1
85,080	-				-0.0
85,080	-				-1.5
85,080	-				-0.8
85,080	-				-0.2
85,080	-				+0.1
85,080	-				+0.1
85,080	-				-1.3
85,080	-				-0.2
85,080	-				+0.1
85,080	-				+0.4
85,080	-				+1.1
85,080	-				-0.3
85,080	-				-0.1
85,080	-				-0.5
85,107	+				+0.3
85,107	+				-0.3
85,107	+				+1.1
85,137	+				+1.3
85,137	+				-0.6
85,174	-		IAI47_19290	0.11	+0.9
85,189	+		IAI47_19290	0.16	-0.2
85,189	+		IAI47_19290	0.16	-1.9
85,189	+		IAI47_19290	0.16	-0.6
85,190	-		IAI47_19290	0.16	+1.4
85,190	-		IAI47_19290	0.16	+0.2
85,190	-		IAI47_19290	0.16	-0.2
85,190	-		IAI47_19290	0.16	-0.9
85,190	-		IAI47_19290	0.16	+0.9
85,211	-		IAI47_19290	0.24	+0.1
85,211	-		IAI47_19290	0.24	+0.1
85,215	+		IAI47_19290	0.25	-0.4
85,215	+		IAI47_19290	0.25	+0.7
85,215	+		IAI47_19290	0.25	+0.1
85,215	+		IAI47_19290	0.25	-1.7
85,215	+		IAI47_19290	0.25	+0.1
85,215	+		IAI47_19290	0.25	-0.5
85,215	+		IAI47_19290	0.25	-0.5
85,216	-		IAI47_19290	0.25	+0.1
85,216	-		IAI47_19290	0.25	+0.5
85,216	-		IAI47_19290	0.25	-2.2
85,216	-		IAI47_19290	0.25	-0.5
85,218	-		IAI47_19290	0.26	+1.1
85,230	+		IAI47_19290	0.30	+0.6
85,293	+		IAI47_19290	0.51	+0.4
85,293	+		IAI47_19290	0.51	+0.3
85,293	+		IAI47_19290	0.51	-0.4
85,304	-		IAI47_19290	0.55	+0.9