Strain Fitness in Pantoea sp. MT58 around IAI47_18410

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
3,917,575	+				-0.8
3,917,658	-				-0.2
3,917,658	-				-1.8
3,917,746	-		IAI47_18405	0.12	+0.2
3,917,870	-		IAI47_18405	0.30	-1.0
3,917,870	-		IAI47_18405	0.30	-1.0
3,917,870	-		IAI47_18405	0.30	-2.2
3,917,870	-		IAI47_18405	0.30	-1.4
3,917,870	-		IAI47_18405	0.30	-0.8
3,917,884	-		IAI47_18405	0.32	-0.4
3,917,912	-		IAI47_18405	0.36	-1.4
3,917,983	+		IAI47_18405	0.46	-2.1
3,917,984	-		IAI47_18405	0.46	-2.7
3,917,984	-		IAI47_18405	0.46	-1.8
3,917,984	-		IAI47_18405	0.46	-1.4
3,917,984	-		IAI47_18405	0.46	-2.1
3,917,989	+		IAI47_18405	0.47	+0.2
3,917,989	+		IAI47_18405	0.47	-1.8
3,917,990	-		IAI47_18405	0.47	-0.4
3,918,056	-		IAI47_18405	0.56	-1.6
3,918,056	-		IAI47_18405	0.56	-0.3
3,918,056	-		IAI47_18405	0.56	+1.5
3,918,056	-		IAI47_18405	0.56	-1.4
3,918,125	-		IAI47_18405	0.66	-1.4
3,918,301	-				-2.9
3,918,301	-				-2.3
3,918,301	-				-0.8
3,918,301	-				-2.3
3,918,356	-				-1.8
3,918,365	-				+2.5
3,918,365	-				-1.5
3,918,365	-				-1.5
3,918,365	-				-0.1
3,918,373	-				+0.2
3,918,373	-				-0.2
3,918,384	-				+1.4
3,918,409	-				-0.8
3,918,409	-				-0.4
3,918,409	-				-0.6
3,918,409	-				+0.2
3,918,411	-				-1.6
3,918,411	-				+0.4
3,918,411	-				-0.4
3,918,442	-				+2.2
3,918,442	-				+0.8
3,918,442	-				+0.2
3,918,442	-				-0.1
3,918,442	-				-2.1
3,918,442	-				-1.4
3,918,442	-				-1.0
3,918,478	-		IAI47_18410	0.14	-0.8
3,918,478	-		IAI47_18410	0.14	+0.2
3,918,478	-		IAI47_18410	0.14	-1.1
3,918,567	-		IAI47_18410	0.25	+0.2
3,918,606	+		IAI47_18410	0.30	-0.2
3,918,607	-		IAI47_18410	0.30	+0.2
3,918,607	-		IAI47_18410	0.30	-0.8
3,918,718	-		IAI47_18410	0.43	-0.6
3,918,770	+		IAI47_18410	0.50	-2.6
3,918,771	-		IAI47_18410	0.50	-0.5
3,918,771	-		IAI47_18410	0.50	-0.8
3,918,771	-		IAI47_18410	0.50	-1.2
3,918,892	-		IAI47_18410	0.64	+0.2
3,918,892	-		IAI47_18410	0.64	-2.0
3,919,146	+				-0.8
3,919,147	-				-0.6
3,919,147	-				-1.4
3,919,147	-				-0.5
3,919,216	-				-0.4
3,919,216	-				-0.4
3,919,216	-				+0.2
3,919,226	+				-1.4
3,919,227	-				-1.8
3,919,227	-				+0.8
3,919,227	-				+0.2
3,919,227	-				+0.6
3,919,336	-		IAI47_18415	0.61	-0.8
3,919,336	-		IAI47_18415	0.61	+0.6
3,919,374	-		IAI47_18415	0.80	-0.9
3,919,401	-				-1.0
3,919,401	-				-1.1
3,919,401	-				-2.1
3,919,401	-				-0.7
3,919,401	-				+0.8
3,919,401	-				+0.9
3,919,404	-				+1.8
3,919,404	-				+1.7
3,919,404	-				+0.2
3,919,404	-				+0.4
3,919,419	+				-1.4
3,919,420	-				-0.8
3,919,420	-				-0.1
3,919,420	-				+1.1
3,919,420	-				-0.0
3,919,420	-				-1.4
3,919,420	-				+0.9
3,919,437	+				+0.2
3,919,437	+				-1.8
3,919,438	-				+0.2
3,919,438	-				-0.5
3,919,449	+				-2.8
3,919,449	+				-1.1
3,919,449	+				+0.2
3,919,449	+				+0.2
3,919,449	+				-2.1
3,919,449	+				-0.8
3,919,449	+				-2.3
3,919,449	+				+0.2
3,919,450	-				+1.4
3,919,450	-				+0.0
3,919,450	-				+0.5
3,919,450	-				+0.1
3,919,450	-				+0.8
3,919,450	-				-0.3
3,919,450	-				+0.1
3,919,450	-				-0.1
3,919,492	+				+0.3
3,919,493	-				+1.9
3,919,495	+				-0.7
3,919,496	-				+0.1
3,919,496	-				+0.1
3,919,526	-				-0.3
3,919,526	-				-0.3
3,919,575	+				+0.1
3,919,587	+				-0.2
3,919,587	+				-1.8
3,919,588	-				-0.2
3,919,588	-				+0.0
3,919,588	-				-0.6
3,919,619	-				+1.2
3,919,619	-				-0.8
3,919,619	-				-0.4
3,919,689	+				-3.0
3,919,728	+				-3.4
3,919,728	+				-1.8
3,919,728	+				-2.1
3,919,728	+				-1.0
3,919,729	-				-0.8
3,919,729	-				-0.8
3,919,729	-				-2.6
3,919,729	-				-0.8
3,919,729	-				-3.5
3,919,729	-				-1.6
3,919,729	-				-2.4
3,919,755	+				-1.6
3,919,755	+				-2.1
3,919,756	-				-1.1
3,919,756	-				-0.6
3,919,756	-				-1.1
3,919,756	-				-2.1
3,919,756	-				-1.8
3,919,810	-				-2.6
3,919,810	-				-0.5
3,919,842	+		IAI47_18420	0.11	-1.4
3,919,842	+		IAI47_18420	0.11	-1.9
3,919,842	+		IAI47_18420	0.11	-0.1
3,919,842	+		IAI47_18420	0.11	-1.3
3,919,842	+		IAI47_18420	0.11	+1.2
3,919,842	+		IAI47_18420	0.11	-0.8
3,919,843	-		IAI47_18420	0.11	-1.6
3,919,843	-		IAI47_18420	0.11	-1.7
3,919,843	-		IAI47_18420	0.11	-1.4
3,919,846	+		IAI47_18420	0.11	-1.4
3,919,846	+		IAI47_18420	0.11	-0.8
3,919,847	-		IAI47_18420	0.11	-0.8
3,919,847	-		IAI47_18420	0.11	-0.4
3,919,847	-		IAI47_18420	0.11	-2.0
3,919,847	-		IAI47_18420	0.11	-1.4
3,919,908	+		IAI47_18420	0.14	-2.3
3,919,954	+		IAI47_18420	0.15	-0.4
3,919,957	+		IAI47_18420	0.15	-1.8
3,919,957	+		IAI47_18420	0.15	-0.5
3,919,958	-		IAI47_18420	0.15	-0.8
3,919,958	-		IAI47_18420	0.15	-1.4
3,919,958	-		IAI47_18420	0.15	-2.0
3,919,958	-		IAI47_18420	0.15	+0.7
3,920,037	+		IAI47_18420	0.19	+0.2
3,920,039	-		IAI47_18420	0.19	-2.1
3,920,039	-		IAI47_18420	0.19	-2.6
3,920,039	-		IAI47_18420	0.19	+0.2
3,920,039	-		IAI47_18420	0.19	-2.6