Strain Fitness in Pantoea sp. MT58 around IAI47_18255

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
3,884,455	-				+0.2
3,884,484	-				+0.5
3,884,485	+				+0.2
3,884,485	+				+0.2
3,884,485	+				+0.8
3,884,485	+				-0.4
3,884,485	+				+0.4
3,884,485	+				-0.6
3,884,485	+				+0.2
3,884,485	+				+0.8
3,884,485	+				-0.2
3,884,485	+				+1.8
3,884,485	+				+0.9
3,884,485	+				-0.4
3,884,485	+				+0.5
3,884,485	+				-0.6
3,884,485	+				-0.2
3,884,486	-				+0.6
3,884,486	-				-1.1
3,884,486	-				+0.2
3,884,486	-				+0.2
3,884,486	-				+0.2
3,884,486	-				+1.5
3,884,486	-				+0.2
3,884,486	-				+0.4
3,884,486	-				+0.2
3,884,486	-				-0.6
3,884,486	-				-0.1
3,884,486	-				-0.3
3,884,486	-				+1.2
3,884,486	-				-0.2
3,884,496	-				+0.2
3,884,504	-				-1.0
3,884,515	+				+0.5
3,884,515	+				+1.1
3,884,515	+				-0.5
3,884,515	+				+1.8
3,884,515	+				-0.9
3,884,516	-				+0.6
3,884,516	-				-0.4
3,884,516	-				-0.3
3,884,516	-				-0.0
3,884,516	-				+0.5
3,884,516	-				+1.2
3,884,516	-				+1.2
3,884,516	-				+1.2
3,884,517	+				+0.8
3,884,517	+				+1.1
3,884,517	+				+0.2
3,884,518	-				-0.6
3,884,518	-				+0.0
3,884,530	+				-1.7
3,884,531	-				+1.2
3,884,531	-				-0.3
3,884,552	+				-1.6
3,884,553	-				+2.2
3,884,553	-				+2.2
3,884,553	-				+0.5
3,884,580	-				-0.1
3,884,596	+				-1.0
3,884,597	-				-1.8
3,884,618	-				+0.4
3,884,634	-				+0.5
3,884,634	-				-0.8
3,884,635	+				-0.8
3,884,635	+				-0.0
3,884,635	+				+0.6
3,884,636	-				+0.5
3,884,636	-				+1.1
3,884,636	-				-0.5
3,884,656	+				-0.1
3,884,656	+				+2.5
3,884,656	+				+0.7
3,884,656	+				-0.3
3,884,657	-				+0.8
3,884,662	+				+2.2
3,884,662	+				+1.8
3,884,662	+				+2.1
3,884,662	+				-0.2
3,884,662	+				+0.8
3,884,663	-				+1.7
3,884,663	-				+2.4
3,884,686	+				+1.8
3,884,686	+				+0.2
3,884,699	+				+0.5
3,884,699	+				+1.8
3,884,700	-				+1.2
3,884,703	+				+0.2
3,884,703	+				-0.8
3,884,703	+				+2.8
3,884,703	+				+1.9
3,884,703	+				+0.6
3,884,703	+				+0.3
3,884,703	+				+0.7
3,884,703	+				+0.9
3,884,703	+				+0.9
3,884,703	+				+1.0
3,884,703	+				+0.5
3,884,703	+				+0.3
3,884,703	+				+3.1
3,884,703	+				+2.4
3,884,703	+				+1.0
3,884,703	+				+0.9
3,884,703	+				+0.3
3,884,703	+				-0.2
3,884,703	+				+1.7
3,884,703	+				-0.0
3,884,703	+				-0.3
3,884,704	-				+0.7
3,884,704	-				+0.9
3,884,704	-				+2.1
3,884,704	-				+1.5
3,884,704	-				+1.5
3,884,704	-				+1.4
3,884,704	-				+0.4
3,884,704	-				+0.2
3,884,704	-				+0.8
3,884,704	-				+1.7
3,884,704	-				+0.5
3,884,704	-				+0.9
3,884,704	-				+0.6
3,884,704	-				+1.3
3,884,704	-				+1.3
3,884,704	-				+0.6
3,884,704	-				+0.2
3,884,704	-				-1.4
3,884,704	-				+3.0
3,884,704	-				+1.0
3,884,708	+				+0.7
3,884,708	+				-0.0
3,884,708	+				+0.3
3,884,708	+				+0.1
3,884,709	-				+0.7
3,884,709	-				+0.6
3,884,727	+				-0.5
3,884,727	+				+0.8
3,884,727	+				+1.2
3,884,727	+				+0.1
3,884,727	+				+0.3
3,884,727	+				+1.2
3,884,727	+				+1.0
3,884,728	-				-0.2
3,884,728	-				+0.1
3,884,728	-				+1.3
3,884,728	-				+1.4
3,884,728	-				+0.6
3,884,728	-				+0.2
3,884,728	-				+1.9
3,884,728	-				+0.9
3,884,728	-				+1.5
3,884,728	-				+0.2
3,884,728	-				+2.5
3,884,728	-				+1.0
3,884,815	+		IAI47_18250	0.26	-1.1
3,884,815	+		IAI47_18250	0.26	+0.5
3,884,816	-		IAI47_18250	0.26	+0.7
3,884,816	-		IAI47_18250	0.26	+1.0
3,884,846	+		IAI47_18250	0.33	-0.1
3,884,847	-		IAI47_18250	0.33	+0.7
3,884,847	-		IAI47_18250	0.33	+0.2
3,884,847	-		IAI47_18250	0.33	-0.2
3,884,847	-		IAI47_18250	0.33	+1.7
3,884,847	-		IAI47_18250	0.33	+0.8
3,884,847	-		IAI47_18250	0.33	-0.1
3,884,847	-		IAI47_18250	0.33	+2.1
3,884,854	+		IAI47_18250	0.34	+0.4
3,884,854	+		IAI47_18250	0.34	+1.3
3,884,855	-		IAI47_18250	0.34	+1.3
3,885,038	-		IAI47_18250	0.72	+0.5
3,885,115	+		IAI47_18250	0.88	+0.5
3,885,115	+		IAI47_18250	0.88	-0.1
3,885,115	+		IAI47_18250	0.88	-0.5
3,885,116	-		IAI47_18250	0.88	+1.2
3,885,116	-		IAI47_18250	0.88	+0.0
3,885,116	-		IAI47_18250	0.88	+0.2
3,885,116	-		IAI47_18250	0.88	+1.0
3,885,173	+				-1.8
3,885,173	+				+0.5
3,885,174	-				-1.4
3,885,174	-				+1.2
3,885,174	-				+0.9
3,885,267	+		IAI47_18255	0.12	+0.2
3,885,267	+		IAI47_18255	0.12	-0.2
3,885,267	+		IAI47_18255	0.12	-0.4
3,885,267	+		IAI47_18255	0.12	+0.4
3,885,267	+		IAI47_18255	0.12	-0.4
3,885,267	+		IAI47_18255	0.12	+0.8
3,885,267	+		IAI47_18255	0.12	+0.9
3,885,267	+		IAI47_18255	0.12	-0.2
3,885,267	+		IAI47_18255	0.12	+1.6
3,885,268	-		IAI47_18255	0.12	+0.2
3,885,268	-		IAI47_18255	0.12	-0.1
3,885,268	-		IAI47_18255	0.12	+0.2
3,885,268	-		IAI47_18255	0.12	+1.7
3,885,268	-		IAI47_18255	0.12	-0.0
3,885,268	-		IAI47_18255	0.12	+0.2
3,885,268	-		IAI47_18255	0.12	-0.5
3,885,268	-		IAI47_18255	0.12	-0.8
3,885,335	+		IAI47_18255	0.21	+0.8
3,885,336	-		IAI47_18255	0.21	+0.4
3,885,336	-		IAI47_18255	0.21	-0.3
3,885,336	-		IAI47_18255	0.21	-0.7
3,885,445	+		IAI47_18255	0.35	+1.8
3,885,489	+		IAI47_18255	0.40	-0.1
3,885,629	+		IAI47_18255	0.58	-0.5
3,885,629	+		IAI47_18255	0.58	+1.8
3,885,629	+		IAI47_18255	0.58	-0.2
3,885,630	-		IAI47_18255	0.58	-0.2
3,885,630	-		IAI47_18255	0.58	+0.0
3,885,630	-		IAI47_18255	0.58	+0.5
3,885,844	-		IAI47_18255	0.86	-0.7
3,885,844	-		IAI47_18255	0.86	+0.9
3,885,852	+		IAI47_18255	0.87	-0.0
3,885,852	+		IAI47_18255	0.87	-1.0
3,885,855	+		IAI47_18255	0.87	-0.5
3,885,855	+		IAI47_18255	0.87	-2.0
3,885,855	+		IAI47_18255	0.87	+1.2
3,885,855	+		IAI47_18255	0.87	+0.2
3,885,855	+		IAI47_18255	0.87	-0.5
3,885,855	+		IAI47_18255	0.87	-1.0
3,885,855	+		IAI47_18255	0.87	+0.8
3,885,855	+		IAI47_18255	0.87	+1.2
3,885,855	+		IAI47_18255	0.87	-0.1
3,885,855	+		IAI47_18255	0.87	+1.1
3,885,855	+		IAI47_18255	0.87	+0.1
3,885,855	+		IAI47_18255	0.87	+0.5
3,885,855	+		IAI47_18255	0.87	-0.4
3,885,855	+		IAI47_18255	0.87	+0.8
3,885,856	-		IAI47_18255	0.87	-0.6
3,885,856	-		IAI47_18255	0.87	-0.1
3,885,856	-		IAI47_18255	0.87	+0.1
3,885,856	-		IAI47_18255	0.87	-0.5
3,885,856	-		IAI47_18255	0.87	+0.2
3,885,856	-		IAI47_18255	0.87	-0.8
3,885,856	-		IAI47_18255	0.87	-0.5
3,885,856	-		IAI47_18255	0.87	+0.2
3,885,892	-				+1.2
3,885,938	-				-0.6
3,885,955	-				+0.6
3,885,971	+				-0.2
3,885,971	+				+0.4
3,885,971	+				+0.5
3,885,971	+				+0.5
3,885,971	+				-0.2
3,885,974	-				+1.5
3,886,093	+				+0.9
3,886,094	-				+1.2
3,886,101	+				+0.9
3,886,101	+				-0.4
3,886,101	+				+0.7
3,886,101	+				-0.3
3,886,101	+				+1.4
3,886,102	-				+0.7
3,886,102	-				+1.2
3,886,102	-				-0.1
3,886,102	-				+0.7
3,886,102	-				+0.2
3,886,102	-				+0.1
3,886,102	-				+0.2
3,886,102	-				-1.8
3,886,102	-				+0.8
3,886,102	-				-0.2
3,886,102	-				+0.0
3,886,104	+				+1.2
3,886,119	-				+0.5