Strain Fitness in Pantoea sp. MT58 around IAI47_18040

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
3,837,250	-				-0.4
3,837,250	-				-0.0
3,837,250	-				-0.2
3,837,250	-				+0.2
3,837,625	+				+1.0
3,837,625	+				+0.2
3,837,626	-				-0.3
3,837,626	-				+1.4
3,837,627	+				+0.2
3,837,627	+				+0.7
3,837,628	-				+0.3
3,837,628	-				-0.4
3,837,628	-				+0.1
3,837,628	-				-2.0
3,837,656	-				+0.7
3,837,664	+				+0.5
3,837,664	+				+0.3
3,837,665	-				-1.0
3,837,706	+				+0.5
3,837,707	-				-2.1
3,837,708	+				+0.2
3,837,708	+				+0.2
3,837,709	-				-0.5
3,837,716	+				+0.7
3,837,716	+				+0.6
3,837,717	-				-1.4
3,837,717	-				-0.7
3,837,717	-				+0.2
3,837,728	+				+2.0
3,837,729	-				-0.8
3,837,746	+				+0.2
3,837,747	-				-0.3
3,837,747	-				+0.5
3,837,748	+				-0.3
3,837,748	+				+0.4
3,837,748	+				+0.3
3,837,748	+				-0.1
3,837,748	+				+1.8
3,837,748	+				-1.4
3,837,749	-				-1.5
3,837,749	-				-0.1
3,837,826	+				+0.9
3,837,827	-				-1.4
3,837,827	-				-1.4
3,837,853	+				+1.3
3,837,853	+				-1.1
3,837,853	+				-0.6
3,837,853	+				-0.0
3,837,853	+				-1.4
3,837,853	+				-0.0
3,837,853	+				+2.6
3,837,853	+				+0.6
3,837,854	-				-1.4
3,837,854	-				+0.2
3,837,854	-				-4.0
3,837,854	-				-2.1
3,837,854	-				-2.8
3,837,854	-				-4.4
3,837,854	-				-3.3
3,837,854	-				-3.3
3,837,855	+				-0.1
3,837,855	+				+2.8
3,837,855	+				+0.7
3,837,855	+				-0.0
3,837,855	+				-0.8
3,837,856	-				-0.8
3,837,856	-				-3.1
3,837,857	+				-0.1
3,837,857	+				-0.6
3,837,857	+				+1.0
3,837,857	+				-0.1
3,837,857	+				-0.0
3,837,857	+				+0.1
3,837,857	+				-0.4
3,837,857	+				-0.5
3,837,857	+				+0.2
3,837,857	+				-0.8
3,837,857	+				+0.2
3,837,857	+				-0.5
3,837,857	+				+0.2
3,837,857	+				-0.3
3,837,857	+				-0.5
3,837,857	+				+0.9
3,837,857	+				+0.5
3,837,858	-				-2.8
3,837,858	-				-5.0
3,837,858	-				-2.6
3,837,858	-				-1.8
3,837,858	-				-2.4
3,837,858	-				-3.3
3,837,858	-				-3.5
3,837,858	-				-3.8
3,837,858	-				-0.8
3,837,858	-				-1.8
3,837,858	-				-3.7
3,837,858	-				-3.1
3,837,858	-				-3.5
3,837,858	-				-2.4
3,837,887	+				+1.0
3,837,887	+				-0.6
3,837,887	+				-0.0
3,837,887	+				+0.2
3,837,887	+				+1.0
3,837,887	+				-0.5
3,837,887	+				-0.9
3,837,888	-				-3.6
3,837,888	-				-3.0
3,837,888	-				-2.1
3,837,888	-				-0.8
3,837,888	-				-2.4
3,837,888	-				+0.2
3,837,888	-				+0.2
3,837,896	+				+0.1
3,837,896	+				+2.4
3,837,896	+				-1.6
3,837,896	+				-0.7
3,837,896	+				+2.4
3,837,896	+				-0.5
3,837,896	+				-1.0
3,837,896	+				-0.7
3,837,896	+				+1.8
3,837,896	+				-0.5
3,837,896	+				-0.0
3,837,896	+				+0.0
3,837,897	-				-3.0
3,837,897	-				-4.0
3,837,897	-				-2.1
3,837,897	-				-3.1
3,837,897	-				-3.8
3,837,897	-				-2.4
3,837,898	+				+0.5
3,837,898	+				-0.2
3,837,898	+				+1.4
3,837,898	+				-1.0
3,837,898	+				-0.2
3,837,898	+				-1.9
3,837,898	+				-0.8
3,837,899	-				-3.9
3,837,899	-				-3.8
3,837,899	-				-3.5
3,837,899	-				-0.8
3,837,899	-				-2.4
3,837,899	-				-2.4
3,837,899	-				-1.8
3,837,899	-				-3.8
3,837,899	-				-2.4
3,837,899	-				-3.0
3,837,899	-				-3.1
3,837,900	+				-1.1
3,837,900	+				+0.2
3,837,900	+				+0.2
3,837,900	+				+0.3
3,837,900	+				-0.0
3,837,900	+				+0.2
3,837,900	+				+0.6
3,837,901	-				-2.1
3,837,901	-				-2.8
3,837,923	-				+0.2
3,838,099	+		IAI47_18040	0.11	-2.0
3,838,099	+		IAI47_18040	0.11	-1.4
3,838,100	-		IAI47_18040	0.11	-1.4
3,838,169	+		IAI47_18040	0.15	-2.6
3,838,169	+		IAI47_18040	0.15	-2.4
3,838,170	-		IAI47_18040	0.15	-0.8
3,838,170	-		IAI47_18040	0.15	-4.0
3,838,170	-		IAI47_18040	0.15	-3.4
3,838,212	+		IAI47_18040	0.18	-0.8
3,838,213	-		IAI47_18040	0.18	-2.1
3,838,213	-		IAI47_18040	0.18	-1.8
3,838,213	-		IAI47_18040	0.18	-2.4
3,838,246	+		IAI47_18040	0.20	-1.8
3,838,246	+		IAI47_18040	0.20	-2.4
3,838,246	+		IAI47_18040	0.20	-4.7
3,838,247	-		IAI47_18040	0.20	-2.1
3,838,353	+		IAI47_18040	0.27	-1.4
3,838,354	-		IAI47_18040	0.27	-1.8
3,838,354	-		IAI47_18040	0.27	-0.8
3,838,354	-		IAI47_18040	0.27	-2.1
3,838,354	-		IAI47_18040	0.27	-1.8
3,838,387	+		IAI47_18040	0.29	-3.1
3,838,387	+		IAI47_18040	0.29	-3.7
3,838,388	-		IAI47_18040	0.29	-3.4
3,838,486	+		IAI47_18040	0.35	-3.3
3,838,486	+		IAI47_18040	0.35	-1.4
3,838,487	-		IAI47_18040	0.35	-2.1
3,838,503	+		IAI47_18040	0.36	-2.8
3,838,503	+		IAI47_18040	0.36	-1.4
3,838,504	-		IAI47_18040	0.36	-2.4
3,838,504	-		IAI47_18040	0.36	-3.3
3,838,504	-		IAI47_18040	0.36	-2.6
3,838,504	-		IAI47_18040	0.36	-1.4
3,838,507	+		IAI47_18040	0.36	-3.4
3,838,507	+		IAI47_18040	0.36	-3.8
3,838,508	-		IAI47_18040	0.36	-2.8
3,838,508	-		IAI47_18040	0.36	-3.7
3,838,508	-		IAI47_18040	0.36	-3.1
3,838,508	-		IAI47_18040	0.36	-2.8
3,838,508	-		IAI47_18040	0.36	-1.4
3,838,508	-		IAI47_18040	0.36	-6.2
3,838,532	-		IAI47_18040	0.38	-1.4
3,838,593	+		IAI47_18040	0.42	-2.4
3,838,593	+		IAI47_18040	0.42	-1.8
3,838,593	+		IAI47_18040	0.42	-3.1
3,838,594	-		IAI47_18040	0.42	-2.6
3,838,613	-		IAI47_18040	0.43	-1.8
3,838,645	+		IAI47_18040	0.45	-1.8
3,838,645	+		IAI47_18040	0.45	-2.6
3,838,645	+		IAI47_18040	0.45	-2.6
3,838,645	+		IAI47_18040	0.45	-2.6
3,838,645	+		IAI47_18040	0.45	-4.1
3,838,645	+		IAI47_18040	0.45	-2.8
3,838,645	+		IAI47_18040	0.45	-2.4
3,838,645	+		IAI47_18040	0.45	-2.1
3,838,645	+		IAI47_18040	0.45	-1.8
3,838,645	+		IAI47_18040	0.45	-3.4
3,838,645	+		IAI47_18040	0.45	-1.8
3,838,645	+		IAI47_18040	0.45	-1.8
3,838,645	+		IAI47_18040	0.45	-3.3
3,838,646	-		IAI47_18040	0.45	-1.8
3,838,646	-		IAI47_18040	0.45	-5.5
3,838,646	-		IAI47_18040	0.45	-3.7
3,838,646	-		IAI47_18040	0.45	-3.0
3,838,646	-		IAI47_18040	0.45	-3.6
3,838,646	-		IAI47_18040	0.45	-2.8
3,838,646	-		IAI47_18040	0.45	-1.8
3,838,646	-		IAI47_18040	0.45	-1.4
3,838,646	-		IAI47_18040	0.45	-2.6
3,838,646	-		IAI47_18040	0.45	-1.4
3,838,646	-		IAI47_18040	0.45	-1.8
3,838,646	-		IAI47_18040	0.45	-1.8
3,838,646	-		IAI47_18040	0.45	-1.8
3,838,646	-		IAI47_18040	0.45	-3.8
3,838,647	+		IAI47_18040	0.45	-3.6
3,838,647	+		IAI47_18040	0.45	-4.3
3,838,647	+		IAI47_18040	0.45	-4.0
3,838,648	-		IAI47_18040	0.45	-1.8
3,838,649	+		IAI47_18040	0.45	-1.4
3,838,649	+		IAI47_18040	0.45	-1.8
3,838,649	+		IAI47_18040	0.45	-3.1
3,838,649	+		IAI47_18040	0.45	-3.8
3,838,649	+		IAI47_18040	0.45	-3.1
3,838,649	+		IAI47_18040	0.45	-3.1
3,838,649	+		IAI47_18040	0.45	-2.1
3,838,649	+		IAI47_18040	0.45	-3.6
3,838,650	-		IAI47_18040	0.45	-1.8
3,838,650	-		IAI47_18040	0.45	-1.8
3,838,650	-		IAI47_18040	0.45	-2.4
3,838,650	-		IAI47_18040	0.45	-4.0
3,838,650	-		IAI47_18040	0.45	-2.6
3,838,650	-		IAI47_18040	0.45	-1.8
3,838,650	-		IAI47_18040	0.45	-2.6
3,838,659	+		IAI47_18040	0.46	-3.5
3,838,659	+		IAI47_18040	0.46	-3.8
3,838,660	-		IAI47_18040	0.46	-2.1
3,838,660	-		IAI47_18040	0.46	-2.8
3,838,660	-		IAI47_18040	0.46	-1.4
3,838,714	+		IAI47_18040	0.49	-3.3
3,838,714	+		IAI47_18040	0.49	-2.4
3,838,714	+		IAI47_18040	0.49	-0.8
3,838,714	+		IAI47_18040	0.49	-1.4
3,838,715	-		IAI47_18040	0.49	-1.8
3,838,715	-		IAI47_18040	0.49	-2.6
3,838,716	+		IAI47_18040	0.49	-2.4
3,838,722	+		IAI47_18040	0.50	-3.3
3,838,722	+		IAI47_18040	0.50	-3.4
3,838,722	+		IAI47_18040	0.50	-1.8
3,838,722	+		IAI47_18040	0.50	-0.8
3,838,722	+		IAI47_18040	0.50	-2.1
3,838,722	+		IAI47_18040	0.50	-3.0
3,838,722	+		IAI47_18040	0.50	-2.1
3,838,723	-		IAI47_18040	0.50	-1.4
3,838,723	-		IAI47_18040	0.50	-3.7
3,838,723	-		IAI47_18040	0.50	-2.6
3,838,723	-		IAI47_18040	0.50	-3.1
3,838,723	-		IAI47_18040	0.50	-2.4
3,838,723	-		IAI47_18040	0.50	-1.4
3,838,840	+		IAI47_18040	0.57	-3.1
3,838,840	+		IAI47_18040	0.57	-4.6
3,838,841	-		IAI47_18040	0.57	-2.4
3,838,841	-		IAI47_18040	0.57	-3.0
3,838,841	-		IAI47_18040	0.57	-1.8
3,838,841	-		IAI47_18040	0.57	-3.8
3,838,852	+		IAI47_18040	0.58	-2.8
3,838,853	-		IAI47_18040	0.58	-4.3
3,838,933	-		IAI47_18040	0.63	-2.6
3,839,005	-		IAI47_18040	0.68	-3.5
3,839,049	+		IAI47_18040	0.70	-0.8
3,839,049	+		IAI47_18040	0.70	-2.4
3,839,050	-		IAI47_18040	0.70	-3.1
3,839,211	+		IAI47_18040	0.81	-4.0
3,839,212	-		IAI47_18040	0.81	-3.0
3,839,212	-		IAI47_18040	0.81	-1.4
3,839,212	-		IAI47_18040	0.81	-3.0
3,839,212	-		IAI47_18040	0.81	+0.2
3,839,212	-		IAI47_18040	0.81	-2.8
3,839,230	+		IAI47_18040	0.82	-3.7
3,839,230	+		IAI47_18040	0.82	-2.6
3,839,230	+		IAI47_18040	0.82	-5.1
3,839,230	+		IAI47_18040	0.82	-3.3
3,839,256	+		IAI47_18040	0.83	-1.4
3,839,256	+		IAI47_18040	0.83	-3.6
3,839,257	-		IAI47_18040	0.83	-3.0
3,839,258	+		IAI47_18040	0.83	-1.8
3,839,258	+		IAI47_18040	0.83	-3.8
3,839,258	+		IAI47_18040	0.83	-3.4
3,839,258	+		IAI47_18040	0.83	-1.8
3,839,259	-		IAI47_18040	0.84	-4.1
3,839,259	-		IAI47_18040	0.84	-2.8
3,839,259	-		IAI47_18040	0.84	-2.4
3,839,259	-		IAI47_18040	0.84	-3.3
3,839,259	-		IAI47_18040	0.84	-3.0
3,839,285	-		IAI47_18040	0.85	-1.4
3,839,305	-		IAI47_18040	0.86	-4.2
3,839,305	-		IAI47_18040	0.86	-3.1
3,839,305	-		IAI47_18040	0.86	-3.3
3,839,419	-				-2.6
3,839,419	-				-2.1
3,839,518	+				+1.8
3,839,518	+				+0.2
3,839,519	-				-2.8
3,839,519	-				-2.0
3,839,519	-				-3.3
3,839,535	-				-3.1
3,839,550	+				-2.6
3,839,655	+				-3.8
3,839,655	+				-3.5
3,839,655	+				-0.8
3,839,655	+				-2.1
3,839,655	+				-1.8
3,839,656	-				-3.6
3,839,656	-				-2.8
3,839,656	-				-0.8
3,839,675	-		IAI47_18045	0.11	-2.1
3,839,794	+		IAI47_18045	0.20	-1.4
3,839,809	+		IAI47_18045	0.21	-1.4
3,839,809	+		IAI47_18045	0.21	-4.0
3,839,810	-		IAI47_18045	0.21	-4.9
3,839,810	-		IAI47_18045	0.21	-3.3
3,839,851	+		IAI47_18045	0.24	-3.0
3,839,852	-		IAI47_18045	0.24	-0.8
3,839,852	-		IAI47_18045	0.24	-0.8
3,839,852	-		IAI47_18045	0.24	-3.6
3,839,915	-		IAI47_18045	0.29	-3.1
3,839,940	-		IAI47_18045	0.31	+0.2
3,839,940	-		IAI47_18045	0.31	-3.0
3,839,995	+		IAI47_18045	0.36	-0.8
3,839,995	+		IAI47_18045	0.36	+0.2
3,839,995	+		IAI47_18045	0.36	-3.0
3,839,995	+		IAI47_18045	0.36	-3.9
3,839,996	-		IAI47_18045	0.36	-2.6
3,839,996	-		IAI47_18045	0.36	-0.8
3,840,006	+		IAI47_18045	0.36	-1.4
3,840,007	-		IAI47_18045	0.36	-3.1
3,840,007	-		IAI47_18045	0.36	-2.6
3,840,049	+		IAI47_18045	0.40	-0.8
3,840,050	-		IAI47_18045	0.40	-3.1
3,840,050	-		IAI47_18045	0.40	-4.7
3,840,050	-		IAI47_18045	0.40	-3.5
3,840,050	-		IAI47_18045	0.40	-4.6
3,840,256	+		IAI47_18045	0.56	+0.2
3,840,335	+		IAI47_18045	0.62	-1.8
3,840,336	-		IAI47_18045	0.62	-4.0
3,840,336	-		IAI47_18045	0.62	-3.1
3,840,336	-		IAI47_18045	0.62	-3.3
3,840,373	+		IAI47_18045	0.65	-1.4
3,840,373	+		IAI47_18045	0.65	-1.8
3,840,373	+		IAI47_18045	0.65	-3.4
3,840,374	-		IAI47_18045	0.65	-1.8
3,840,374	-		IAI47_18045	0.65	+0.2
3,840,491	-		IAI47_18045	0.74	-2.6