Strain Fitness in Pantoea sp. MT58 around IAI47_17965

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
3,814,088	+		IAI47_17960	0.79	+0.2
3,814,089	-		IAI47_17960	0.79	-0.6
3,814,156	+		IAI47_17960	0.84	+0.8
3,814,156	+		IAI47_17960	0.84	-0.4
3,814,157	-		IAI47_17960	0.84	+0.2
3,814,172	+		IAI47_17960	0.85	-0.1
3,814,238	+				-0.4
3,814,239	-				+1.2
3,814,239	-				+3.0
3,814,239	-				-1.2
3,814,274	+				+0.6
3,814,274	+				+0.4
3,814,275	-				-0.6
3,814,329	+				-0.1
3,814,356	+				-1.2
3,814,356	+				+0.5
3,814,375	+				-0.4
3,814,375	+				+0.5
3,814,375	+				-0.6
3,814,375	+				-0.6
3,814,375	+				-0.7
3,814,376	-				-0.5
3,814,376	-				-1.2
3,814,376	-				+0.0
3,814,376	-				+1.2
3,814,376	-				+0.8
3,814,376	-				-0.7
3,814,376	-				+0.5
3,814,376	-				-1.2
3,814,376	-				+0.2
3,814,376	-				+0.2
3,814,376	-				-0.5
3,814,376	-				-0.6
3,814,393	+				+0.2
3,814,393	+				-1.1
3,814,393	+				+2.2
3,814,394	-				+0.8
3,814,394	-				+0.5
3,814,394	-				+0.6
3,814,479	+				-0.4
3,814,480	-				+0.2
3,814,480	-				+0.4
3,814,480	-				+0.1
3,814,615	+				-1.7
3,814,615	+				+0.2
3,814,615	+				+0.3
3,814,616	-				-0.1
3,814,616	-				+0.0
3,814,616	-				+0.7
3,814,616	-				-0.4
3,814,616	-				+0.0
3,814,616	-				+1.4
3,814,616	-				+0.6
3,814,651	+				+0.7
3,814,651	+				-1.4
3,814,651	+				-1.1
3,814,651	+				-0.2
3,814,651	+				+2.5
3,814,651	+				-0.8
3,814,652	-				-0.8
3,814,652	-				+1.2
3,814,652	-				-0.2
3,814,652	-				+0.6
3,814,652	-				+3.2
3,814,652	-				-0.0
3,814,696	+				+0.9
3,814,696	+				+0.7
3,814,696	+				+0.5
3,814,696	+				+0.4
3,814,704	+				+2.0
3,814,704	+				+0.2
3,814,704	+				-0.1
3,814,710	+				-0.8
3,814,711	-				-0.2
3,814,711	-				+0.9
3,814,774	-				-0.3
3,814,792	+				+1.2
3,814,792	+				-1.8
3,814,792	+				-1.5
3,814,793	-				+0.2
3,814,793	-				-0.6
3,814,793	-				-0.8
3,814,793	-				+0.6
3,814,793	-				-0.8
3,814,801	+				-0.9
3,814,801	+				-0.1
3,814,802	-				-0.4
3,814,833	-				+1.5
3,814,834	-				+1.2
3,814,926	+				+0.2
3,814,986	-				+0.6
3,814,986	-				+0.9
3,815,000	-				+0.2
3,815,000	-				-1.4
3,815,000	-				+0.5
3,815,000	-				-0.8
3,815,010	+				+1.5
3,815,011	-				-0.2
3,815,049	+				-0.4
3,815,049	+				+1.2
3,815,049	+				+0.8
3,815,049	+				+0.2
3,815,049	+				-0.6
3,815,049	+				-2.6
3,815,049	+				+0.8
3,815,050	-				+0.2
3,815,050	-				+1.7
3,815,050	-				-0.4
3,815,050	-				+1.1
3,815,052	+				+1.0
3,815,053	-				+1.4
3,815,053	-				+0.2
3,815,079	+				-0.8
3,815,146	+				-3.0
3,815,313	+		IAI47_17965	0.15	-3.6
3,815,313	+		IAI47_17965	0.15	-4.5
3,815,313	+		IAI47_17965	0.15	-2.4
3,815,313	+		IAI47_17965	0.15	-3.5
3,815,314	-		IAI47_17965	0.15	-1.8
3,815,314	-		IAI47_17965	0.15	-3.0
3,815,314	-		IAI47_17965	0.15	-3.7
3,815,314	-		IAI47_17965	0.15	-1.8
3,815,314	-		IAI47_17965	0.15	-2.1
3,815,314	-		IAI47_17965	0.15	-4.2
3,815,314	-		IAI47_17965	0.15	-4.1
3,815,494	+		IAI47_17965	0.26	-2.6
3,815,559	+		IAI47_17965	0.30	-4.4
3,815,559	+		IAI47_17965	0.30	-2.1
3,815,559	+		IAI47_17965	0.30	-3.9
3,815,560	-		IAI47_17965	0.30	-2.8
3,815,560	-		IAI47_17965	0.30	-3.0
3,815,560	-		IAI47_17965	0.30	-3.5
3,815,560	-		IAI47_17965	0.30	-3.5
3,815,560	-		IAI47_17965	0.30	-2.1
3,815,560	-		IAI47_17965	0.30	-3.5
3,815,586	+		IAI47_17965	0.31	-3.1
3,815,586	+		IAI47_17965	0.31	-4.7
3,815,715	+		IAI47_17965	0.39	-2.1
3,815,716	-		IAI47_17965	0.39	-3.0
3,815,716	-		IAI47_17965	0.39	-2.6
3,815,777	+		IAI47_17965	0.43	-1.4
3,815,777	+		IAI47_17965	0.43	-3.4
3,815,778	-		IAI47_17965	0.43	-2.6
3,816,040	+		IAI47_17965	0.59	-0.8
3,816,041	-		IAI47_17965	0.59	-1.8
3,816,041	-		IAI47_17965	0.59	-3.5
3,816,041	-		IAI47_17965	0.59	-2.1
3,816,082	+		IAI47_17965	0.61	-2.4
3,816,082	+		IAI47_17965	0.61	-2.1
3,816,082	+		IAI47_17965	0.61	-2.8
3,816,083	-		IAI47_17965	0.61	-1.4
3,816,091	+		IAI47_17965	0.62	-4.0
3,816,092	-		IAI47_17965	0.62	-1.8
3,816,092	-		IAI47_17965	0.62	-1.8
3,816,092	-		IAI47_17965	0.62	-3.1
3,816,112	+		IAI47_17965	0.63	-2.6
3,816,113	-		IAI47_17965	0.63	-4.4
3,816,113	-		IAI47_17965	0.63	-2.8
3,816,129	+		IAI47_17965	0.64	-2.1
3,816,130	-		IAI47_17965	0.64	-3.9
3,816,130	-		IAI47_17965	0.64	-2.6
3,816,130	-		IAI47_17965	0.64	-2.1
3,816,148	+		IAI47_17965	0.65	-1.8
3,816,148	+		IAI47_17965	0.65	-4.8
3,816,148	+		IAI47_17965	0.65	-2.6
3,816,148	+		IAI47_17965	0.65	-3.4
3,816,148	+		IAI47_17965	0.65	-1.8
3,816,148	+		IAI47_17965	0.65	-2.8
3,816,149	-		IAI47_17965	0.65	-1.8
3,816,149	-		IAI47_17965	0.65	-2.8
3,816,149	-		IAI47_17965	0.65	-1.4
3,816,149	-		IAI47_17965	0.65	-3.5
3,816,149	-		IAI47_17965	0.65	-3.8
3,816,149	-		IAI47_17965	0.65	-2.1
3,816,149	-		IAI47_17965	0.65	-2.1
3,816,149	-		IAI47_17965	0.65	-4.4
3,816,149	-		IAI47_17965	0.65	-2.1
3,816,236	-		IAI47_17965	0.71	-2.4
3,816,236	-		IAI47_17965	0.71	-1.8
3,816,279	+		IAI47_17965	0.73	-2.4
3,816,279	+		IAI47_17965	0.73	-2.8
3,816,280	-		IAI47_17965	0.73	+0.2
3,816,292	-		IAI47_17965	0.74	-0.8
3,816,292	-		IAI47_17965	0.74	-0.8
3,816,294	+		IAI47_17965	0.74	-0.8
3,816,300	+		IAI47_17965	0.75	-3.8
3,816,301	-		IAI47_17965	0.75	-2.6
3,816,301	-		IAI47_17965	0.75	-3.3
3,816,336	+		IAI47_17965	0.77	-1.8
3,816,336	+		IAI47_17965	0.77	-2.6
3,816,337	-		IAI47_17965	0.77	-2.1
3,816,337	-		IAI47_17965	0.77	-3.3
3,816,337	-		IAI47_17965	0.77	-4.4
3,816,372	+		IAI47_17965	0.79	-4.0
3,816,372	+		IAI47_17965	0.79	-2.1
3,816,402	+		IAI47_17965	0.81	-0.8
3,816,438	+		IAI47_17965	0.83	-4.2
3,816,478	-		IAI47_17965	0.85	+0.2
3,816,508	+		IAI47_17965	0.87	-2.1
3,816,509	-		IAI47_17965	0.87	-2.6
3,816,535	+		IAI47_17965	0.89	-2.6
3,816,536	-		IAI47_17965	0.89	-3.8
3,816,536	-		IAI47_17965	0.89	-4.3
3,816,536	-		IAI47_17965	0.89	-0.8
3,816,574	-				-2.8
3,816,574	-				-2.4
3,816,574	-				-3.0
3,816,574	-				-3.0
3,816,578	-				-3.1
3,816,606	-				-2.6
3,816,610	-				-0.8
3,816,689	+				-3.9
3,816,689	+				-1.4
3,816,693	+				-2.6
3,816,700	+				+0.2
3,816,700	+				-1.4
3,816,715	+				+0.6
3,816,779	-				+0.2
3,816,785	+				-0.8
3,816,834	-				-0.1
3,816,843	+				-1.4
3,816,843	+				+3.2
3,816,844	-				-0.7
3,816,875	+				+0.2
3,816,876	-				+0.4
3,816,876	-				-1.8
3,816,876	-				-0.3
3,816,883	+				+0.5
3,816,886	-				+2.2
3,816,900	-				+0.2
3,816,900	-				-0.8
3,816,912	-				+0.2
3,816,939	+				-0.1
3,816,940	-				+0.3
3,816,974	-				-0.5
3,816,994	-				+0.5
3,816,994	-				+0.6
3,816,995	+				+0.9
3,817,012	+				-0.8
3,817,044	+				-1.0
3,817,051	+				-1.4
3,817,074	+				-0.6
3,817,085	+				+2.2
3,817,094	+				-1.3
3,817,095	-				-1.5
3,817,097	+				+0.9
3,817,097	+				+0.5
3,817,160	-				+0.2
3,817,160	-				+2.5
3,817,172	+				-1.2
3,817,172	+				-0.1
3,817,172	+				-0.2
3,817,174	+				-0.8
3,817,174	+				-1.1
3,817,229	+				-0.0
3,817,229	+				-0.8
3,817,283	+				-0.8
3,817,295	+				-0.8
3,817,295	+				+0.2
3,817,295	+				+0.2
3,817,296	-				+0.2
3,817,376	+		IAI47_17970	0.36	+1.5
3,817,376	+		IAI47_17970	0.36	-0.3
3,817,376	+		IAI47_17970	0.36	-0.8
3,817,377	-		IAI47_17970	0.36	+0.6
3,817,377	-		IAI47_17970	0.36	+1.0
3,817,377	-		IAI47_17970	0.36	-0.4
3,817,377	-		IAI47_17970	0.36	+0.2
3,817,377	-		IAI47_17970	0.36	-0.1
3,817,421	+		IAI47_17970	0.53	-0.1
3,817,421	+		IAI47_17970	0.53	-0.3
3,817,421	+		IAI47_17970	0.53	+1.2
3,817,421	+		IAI47_17970	0.53	+1.8
3,817,421	+		IAI47_17970	0.53	+0.2
3,817,422	-		IAI47_17970	0.53	-1.3
3,817,422	-		IAI47_17970	0.53	+0.7
3,817,422	-		IAI47_17970	0.53	-0.2
3,817,422	-		IAI47_17970	0.53	-1.4
3,817,500	-		IAI47_17970	0.84	-1.8
3,817,505	+		IAI47_17970	0.86	-0.1
3,817,506	-		IAI47_17970	0.86	+1.8
3,817,566	-				+1.7
3,817,576	-				-0.2
3,817,604	+				+2.0
3,817,604	+				-0.4
3,817,604	+				-0.3
3,817,605	-				-0.5
3,817,674	+				+0.9
3,817,674	+				+0.0
3,817,675	-				-0.3
3,817,675	-				-2.1
3,817,675	-				+0.2
3,817,680	+				+0.8
3,817,680	+				-1.1
3,817,680	+				-1.2
3,817,681	-				+0.3
3,817,681	-				+0.2
3,817,701	-				+1.4
3,817,706	+				-0.8
3,817,706	+				-0.3