Strain Fitness in Pantoea sp. MT58 around IAI47_17500

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
3,710,113	+		IAI47_17495	0.24	-0.1
3,710,113	+		IAI47_17495	0.24	+0.1
3,710,113	+		IAI47_17495	0.24	+1.2
3,710,113	+		IAI47_17495	0.24	-1.1
3,710,114	-		IAI47_17495	0.25	+1.2
3,710,114	-		IAI47_17495	0.25	-1.2
3,710,114	-		IAI47_17495	0.25	+0.9
3,710,114	-		IAI47_17495	0.25	-1.4
3,710,114	-		IAI47_17495	0.25	+0.2
3,710,116	-		IAI47_17495	0.25	-0.8
3,710,121	+		IAI47_17495	0.25	+0.9
3,710,229	+		IAI47_17495	0.36	+0.5
3,710,296	+		IAI47_17495	0.42	-0.4
3,710,296	+		IAI47_17495	0.42	+2.0
3,710,297	-		IAI47_17495	0.42	+0.5
3,710,297	-		IAI47_17495	0.42	-0.5
3,710,440	+		IAI47_17495	0.56	+0.8
3,710,440	+		IAI47_17495	0.56	-0.6
3,710,440	+		IAI47_17495	0.56	+0.2
3,710,440	+		IAI47_17495	0.56	-0.9
3,710,441	-		IAI47_17495	0.56	+0.0
3,710,441	-		IAI47_17495	0.56	-0.6
3,710,441	-		IAI47_17495	0.56	+1.5
3,710,550	+		IAI47_17495	0.66	+0.2
3,710,583	+		IAI47_17495	0.69	-2.1
3,710,583	+		IAI47_17495	0.69	-0.5
3,710,583	+		IAI47_17495	0.69	+0.4
3,710,584	-		IAI47_17495	0.70	+0.6
3,710,662	+		IAI47_17495	0.77	-0.6
3,710,662	+		IAI47_17495	0.77	-0.6
3,710,662	+		IAI47_17495	0.77	-0.9
3,710,662	+		IAI47_17495	0.77	+0.1
3,710,662	+		IAI47_17495	0.77	-0.8
3,710,663	-		IAI47_17495	0.77	-1.0
3,710,663	-		IAI47_17495	0.77	+0.2
3,710,663	-		IAI47_17495	0.77	+1.2
3,710,663	-		IAI47_17495	0.77	+0.2
3,710,663	-		IAI47_17495	0.77	+0.0
3,710,663	-		IAI47_17495	0.77	-1.4
3,710,663	-		IAI47_17495	0.77	+2.4
3,710,663	-		IAI47_17495	0.77	+0.5
3,710,730	+		IAI47_17495	0.84	-0.6
3,710,737	+		IAI47_17495	0.84	-0.8
3,710,760	+		IAI47_17495	0.86	+0.5
3,710,779	-		IAI47_17495	0.88	+0.5
3,710,779	-		IAI47_17495	0.88	-0.2
3,710,779	-		IAI47_17495	0.88	+0.2
3,710,899	+				-0.3
3,710,899	+				+0.2
3,710,899	+				-1.8
3,710,900	-				-0.5
3,710,900	-				-0.8
3,710,945	+				+0.2
3,710,945	+				+1.0
3,710,945	+				-1.1
3,710,945	+				-1.8
3,710,946	-				+0.8
3,710,946	-				+0.8
3,710,946	-				-0.7
3,710,946	-				+0.5
3,710,957	+				+0.2
3,710,957	+				-0.8
3,710,958	-				-0.2
3,710,958	-				+1.0
3,710,971	-				-0.1
3,710,971	-				-1.2
3,710,999	-				+0.5
3,711,004	+				-0.2
3,711,004	+				+0.2
3,711,004	+				+0.2
3,711,004	+				-0.1
3,711,004	+				+0.5
3,711,004	+				-0.2
3,711,004	+				-0.8
3,711,005	-				-0.4
3,711,005	-				+1.8
3,711,005	-				-0.8
3,711,005	-				-1.6
3,711,005	-				+0.0
3,711,005	-				-0.1
3,711,005	-				-0.1
3,711,005	-				-1.2
3,711,005	-				+0.8
3,711,005	-				-1.8
3,711,005	-				-0.2
3,711,005	-				+0.2
3,711,005	-				+1.2
3,711,005	-				+0.6
3,711,005	-				-0.1
3,711,005	-				-0.7
3,711,005	-				-0.8
3,711,005	-				-0.4
3,711,007	-				-0.3
3,711,043	+		IAI47_17500	0.14	+0.2
3,711,043	+		IAI47_17500	0.14	-1.6
3,711,044	-		IAI47_17500	0.14	+0.3
3,711,054	+		IAI47_17500	0.15	+0.7
3,711,055	-		IAI47_17500	0.15	+2.2
3,711,055	-		IAI47_17500	0.15	-0.2
3,711,084	+		IAI47_17500	0.19	+1.0
3,711,085	-		IAI47_17500	0.19	-0.4
3,711,126	+		IAI47_17500	0.23	+0.4
3,711,127	-		IAI47_17500	0.24	+0.7
3,711,136	+		IAI47_17500	0.25	+0.5
3,711,137	-		IAI47_17500	0.25	+0.2
3,711,137	-		IAI47_17500	0.25	-0.7
3,711,137	-		IAI47_17500	0.25	+0.7
3,711,235	-		IAI47_17500	0.36	+0.4
3,711,235	-		IAI47_17500	0.36	-0.5
3,711,235	-		IAI47_17500	0.36	+0.9
3,711,289	+		IAI47_17500	0.42	-0.1
3,711,289	+		IAI47_17500	0.42	-1.0
3,711,289	+		IAI47_17500	0.42	-0.8
3,711,289	+		IAI47_17500	0.42	+1.4
3,711,289	+		IAI47_17500	0.42	+0.2
3,711,290	-		IAI47_17500	0.42	+0.1
3,711,290	-		IAI47_17500	0.42	+1.2
3,711,425	+		IAI47_17500	0.57	-0.8
3,711,425	+		IAI47_17500	0.57	+0.4
3,711,425	+		IAI47_17500	0.57	+1.0
3,711,425	+		IAI47_17500	0.57	-0.6
3,711,426	-		IAI47_17500	0.58	+0.8
3,711,426	-		IAI47_17500	0.58	+1.2
3,711,426	-		IAI47_17500	0.58	+0.2
3,711,426	-		IAI47_17500	0.58	-0.3
3,711,426	-		IAI47_17500	0.58	-0.6
3,711,430	+		IAI47_17500	0.58	-1.0
3,711,430	+		IAI47_17500	0.58	-0.2
3,711,430	+		IAI47_17500	0.58	+1.0
3,711,430	+		IAI47_17500	0.58	+0.1
3,711,430	+		IAI47_17500	0.58	-0.3
3,711,430	+		IAI47_17500	0.58	-2.4
3,711,431	-		IAI47_17500	0.58	+0.2
3,711,431	-		IAI47_17500	0.58	+1.6
3,711,431	-		IAI47_17500	0.58	-0.6
3,711,431	-		IAI47_17500	0.58	-1.0
3,711,431	-		IAI47_17500	0.58	-0.8
3,711,431	-		IAI47_17500	0.58	+0.0
3,711,431	-		IAI47_17500	0.58	-0.4
3,711,431	-		IAI47_17500	0.58	+0.2
3,711,431	-		IAI47_17500	0.58	-0.3
3,711,431	-		IAI47_17500	0.58	+0.2
3,711,431	-		IAI47_17500	0.58	-0.8
3,711,432	+		IAI47_17500	0.58	-0.8
3,711,432	+		IAI47_17500	0.58	+0.1
3,711,432	+		IAI47_17500	0.58	+0.7
3,711,432	+		IAI47_17500	0.58	+0.2
3,711,432	+		IAI47_17500	0.58	-0.6
3,711,433	-		IAI47_17500	0.58	-1.5
3,711,433	-		IAI47_17500	0.58	-1.0
3,711,433	-		IAI47_17500	0.58	+0.4
3,711,433	-		IAI47_17500	0.58	-0.1
3,711,436	+		IAI47_17500	0.59	+1.0
3,711,436	+		IAI47_17500	0.59	-1.4
3,711,436	+		IAI47_17500	0.59	+0.2
3,711,436	+		IAI47_17500	0.59	+1.1
3,711,437	-		IAI47_17500	0.59	-0.5
3,711,437	-		IAI47_17500	0.59	+0.2
3,711,460	+		IAI47_17500	0.61	-1.2
3,711,460	+		IAI47_17500	0.61	-0.4
3,711,461	-		IAI47_17500	0.62	+2.8
3,711,499	+		IAI47_17500	0.66	+0.4
3,711,499	+		IAI47_17500	0.66	-2.1
3,711,549	+		IAI47_17500	0.72	+0.0
3,711,549	+		IAI47_17500	0.72	+0.5
3,711,549	+		IAI47_17500	0.72	-1.7
3,711,550	-		IAI47_17500	0.72	+0.2
3,711,550	-		IAI47_17500	0.72	-1.6
3,711,550	-		IAI47_17500	0.72	-0.5
3,711,565	+		IAI47_17500	0.73	-0.8
3,711,565	+		IAI47_17500	0.73	+1.2
3,711,566	-		IAI47_17500	0.73	+1.3
3,711,566	-		IAI47_17500	0.73	-0.3
3,711,566	-		IAI47_17500	0.73	-2.4
3,711,567	+		IAI47_17500	0.74	+0.7
3,711,567	+		IAI47_17500	0.74	+0.1
3,711,568	-		IAI47_17500	0.74	+1.3
3,711,568	-		IAI47_17500	0.74	+0.4
3,711,568	-		IAI47_17500	0.74	+0.9
3,711,690	+		IAI47_17500	0.88	-0.2
3,711,690	+		IAI47_17500	0.88	+0.5
3,711,833	+				-0.1
3,711,834	-				-0.5
3,711,876	+				-0.5
3,711,924	-				-0.3
3,711,951	+				+0.5
3,711,952	-				-0.3
3,711,952	-				+1.5
3,711,952	-				+0.3
3,711,974	+				+1.7
3,711,974	+				-0.2
3,711,974	+				-0.4
3,711,974	+				-0.7
3,711,974	+				-0.6
3,711,974	+				-0.3
3,711,989	+				+0.1
3,711,989	+				-0.3
3,711,989	+				-0.6
3,711,989	+				-0.5
3,711,990	-				-0.0
3,711,990	-				-0.2
3,711,990	-				-0.0
3,711,999	+				+2.4
3,711,999	+				-0.4
3,711,999	+				+0.1
3,712,000	-				-1.8
3,712,000	-				-0.3
3,712,015	+				-1.0
3,712,016	-				+0.0
3,712,016	-				+0.0
3,712,016	-				+0.2
3,712,031	+				+1.5
3,712,031	+				-0.5
3,712,032	-				+0.2
3,712,075	+				+0.5
3,712,090	+				+0.0
3,712,090	+				-0.5
3,712,090	+				-0.4
3,712,091	-				+0.1
3,712,091	-				-0.7
3,712,091	-				-0.4
3,712,139	-		IAI47_17505	0.14	+0.1
3,712,139	-		IAI47_17505	0.14	-0.8
3,712,149	+		IAI47_17505	0.15	-0.1
3,712,149	+		IAI47_17505	0.15	-0.9
3,712,149	+		IAI47_17505	0.15	-0.4
3,712,149	+		IAI47_17505	0.15	+0.7
3,712,157	+		IAI47_17505	0.16	+1.1
3,712,157	+		IAI47_17505	0.16	+0.0
3,712,157	+		IAI47_17505	0.16	-1.0
3,712,158	-		IAI47_17505	0.16	-0.4
3,712,219	+		IAI47_17505	0.23	-0.1
3,712,219	+		IAI47_17505	0.23	+0.4
3,712,219	+		IAI47_17505	0.23	-0.1
3,712,219	+		IAI47_17505	0.23	-0.8
3,712,219	+		IAI47_17505	0.23	-0.6
3,712,220	-		IAI47_17505	0.24	-1.4
3,712,220	-		IAI47_17505	0.24	+0.2
3,712,220	-		IAI47_17505	0.24	+0.4
3,712,238	+		IAI47_17505	0.26	-0.6
3,712,238	+		IAI47_17505	0.26	+1.3
3,712,238	+		IAI47_17505	0.26	-0.8
3,712,238	+		IAI47_17505	0.26	+0.4
3,712,239	-		IAI47_17505	0.26	+0.0
3,712,239	-		IAI47_17505	0.26	+0.3
3,712,239	-		IAI47_17505	0.26	-0.4
3,712,239	-		IAI47_17505	0.26	-0.5
3,712,239	-		IAI47_17505	0.26	-0.8
3,712,375	+		IAI47_17505	0.42	+0.5
3,712,375	+		IAI47_17505	0.42	+1.2
3,712,375	+		IAI47_17505	0.42	+1.8
3,712,375	+		IAI47_17505	0.42	-0.2
3,712,375	+		IAI47_17505	0.42	-0.8
3,712,376	-		IAI47_17505	0.42	-1.3
3,712,385	+		IAI47_17505	0.43	-0.8
3,712,385	+		IAI47_17505	0.43	-1.1
3,712,424	-		IAI47_17505	0.47	-1.5
3,712,436	-		IAI47_17505	0.49	-0.5
3,712,436	-		IAI47_17505	0.49	+0.2
3,712,482	-		IAI47_17505	0.54	-1.1
3,712,482	-		IAI47_17505	0.54	+0.1
3,712,506	+		IAI47_17505	0.57	-0.7
3,712,508	+		IAI47_17505	0.57	-1.4
3,712,509	-		IAI47_17505	0.57	+0.8
3,712,509	-		IAI47_17505	0.57	+0.1
3,712,515	-		IAI47_17505	0.58	+0.2
3,712,515	-		IAI47_17505	0.58	+0.2
3,712,515	-		IAI47_17505	0.58	-0.0
3,712,536	-		IAI47_17505	0.60	-0.4
3,712,536	-		IAI47_17505	0.60	-0.5
3,712,536	-		IAI47_17505	0.60	+1.2
3,712,610	+		IAI47_17505	0.69	+0.3
3,712,628	+		IAI47_17505	0.71	+2.2
3,712,628	+		IAI47_17505	0.71	-0.3
3,712,628	+		IAI47_17505	0.71	-1.0
3,712,628	+		IAI47_17505	0.71	-2.3
3,712,628	+		IAI47_17505	0.71	-0.3
3,712,628	+		IAI47_17505	0.71	+0.3
3,712,628	+		IAI47_17505	0.71	-0.8
3,712,628	+		IAI47_17505	0.71	+0.4
3,712,629	-		IAI47_17505	0.71	-0.6
3,712,629	-		IAI47_17505	0.71	+0.0
3,712,629	-		IAI47_17505	0.71	-0.4
3,712,629	-		IAI47_17505	0.71	-0.4
3,712,629	-		IAI47_17505	0.71	+1.5
3,712,629	-		IAI47_17505	0.71	-0.2
3,712,629	-		IAI47_17505	0.71	-0.3
3,712,629	-		IAI47_17505	0.71	-0.7
3,712,629	-		IAI47_17505	0.71	-1.1
3,712,629	-		IAI47_17505	0.71	+0.5
3,712,661	+		IAI47_17505	0.75	+0.8
3,712,662	-		IAI47_17505	0.75	-1.8
3,712,662	-		IAI47_17505	0.75	+1.2
3,712,688	+		IAI47_17505	0.78	-1.2
3,712,688	+		IAI47_17505	0.78	-0.1
3,712,688	+		IAI47_17505	0.78	-1.0
3,712,688	+		IAI47_17505	0.78	+0.8
3,712,689	-		IAI47_17505	0.78	+1.8
3,712,689	-		IAI47_17505	0.78	-0.1
3,712,722	-		IAI47_17505	0.82	-0.3
3,712,771	+		IAI47_17505	0.87	+1.0