Strain Fitness in Pantoea sp. MT58 around IAI47_17205

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
3,640,371	+				+0.2
3,640,372	-				+1.2
3,640,372	-				-0.2
3,640,396	+				+1.6
3,640,396	+				+1.6
3,640,396	+				-0.1
3,640,397	-				-1.8
3,640,397	-				-1.2
3,640,427	+				-0.1
3,640,514	+				+0.8
3,640,515	-				-1.4
3,640,524	+				-1.4
3,640,524	+				-0.6
3,640,524	+				+0.2
3,640,525	-				-0.6
3,640,525	-				-1.4
3,640,525	-				+1.2
3,640,525	-				-0.6
3,640,525	-				-0.1
3,640,525	-				-0.5
3,640,525	-				-0.1
3,640,525	-				+0.2
3,640,525	-				+2.1
3,640,525	-				-1.4
3,640,536	-		IAI47_17200	0.11	-0.8
3,640,552	+		IAI47_17200	0.12	+3.5
3,640,553	-		IAI47_17200	0.13	-0.1
3,640,565	-		IAI47_17200	0.14	-2.1
3,640,565	-		IAI47_17200	0.14	+0.2
3,640,568	+		IAI47_17200	0.14	-1.2
3,640,568	+		IAI47_17200	0.14	-2.1
3,640,568	+		IAI47_17200	0.14	-1.4
3,640,590	-		IAI47_17200	0.17	-1.4
3,640,619	+		IAI47_17200	0.20	+0.2
3,640,619	+		IAI47_17200	0.20	-0.5
3,640,619	+		IAI47_17200	0.20	+0.6
3,640,620	-		IAI47_17200	0.20	-0.8
3,640,620	-		IAI47_17200	0.20	+0.2
3,640,712	+		IAI47_17200	0.31	-1.4
3,640,713	-		IAI47_17200	0.31	-0.8
3,640,713	-		IAI47_17200	0.31	-2.4
3,640,713	-		IAI47_17200	0.31	-0.8
3,640,715	+		IAI47_17200	0.31	+1.2
3,640,716	-		IAI47_17200	0.32	-0.2
3,640,967	+		IAI47_17200	0.61	-0.6
3,640,967	+		IAI47_17200	0.61	-1.0
3,640,968	-		IAI47_17200	0.61	-0.5
3,640,968	-		IAI47_17200	0.61	+0.4
3,640,980	+		IAI47_17200	0.62	-0.5
3,640,980	+		IAI47_17200	0.62	+0.5
3,640,980	+		IAI47_17200	0.62	-0.5
3,640,980	+		IAI47_17200	0.62	-1.3
3,640,980	+		IAI47_17200	0.62	-1.3
3,640,981	-		IAI47_17200	0.63	+1.5
3,640,981	-		IAI47_17200	0.63	-0.8
3,640,981	-		IAI47_17200	0.63	+0.2
3,640,981	-		IAI47_17200	0.63	+1.2
3,641,081	+		IAI47_17200	0.74	-1.6
3,641,082	-		IAI47_17200	0.74	-1.4
3,641,094	-		IAI47_17200	0.76	-1.3
3,641,099	+		IAI47_17200	0.76	+0.8
3,641,099	+		IAI47_17200	0.76	-0.8
3,641,100	-		IAI47_17200	0.76	+0.8
3,641,100	-		IAI47_17200	0.76	-0.1
3,641,100	-		IAI47_17200	0.76	-0.4
3,641,100	-		IAI47_17200	0.76	-1.0
3,641,103	+		IAI47_17200	0.77	+0.8
3,641,103	+		IAI47_17200	0.77	+0.0
3,641,104	-		IAI47_17200	0.77	+0.2
3,641,104	-		IAI47_17200	0.77	-0.8
3,641,104	-		IAI47_17200	0.77	+0.8
3,641,104	-		IAI47_17200	0.77	+0.2
3,641,119	-		IAI47_17200	0.79	-0.4
3,641,119	-		IAI47_17200	0.79	+0.6
3,641,119	-		IAI47_17200	0.79	-0.8
3,641,159	+		IAI47_17200	0.83	-0.2
3,641,159	+		IAI47_17200	0.83	-2.0
3,641,159	+		IAI47_17200	0.83	+0.7
3,641,159	+		IAI47_17200	0.83	-1.4
3,641,159	+		IAI47_17200	0.83	-2.4
3,641,159	+		IAI47_17200	0.83	-0.4
3,641,159	+		IAI47_17200	0.83	-1.0
3,641,159	+		IAI47_17200	0.83	+2.5
3,641,159	+		IAI47_17200	0.83	-2.3
3,641,159	+		IAI47_17200	0.83	+1.8
3,641,159	+		IAI47_17200	0.83	-2.6
3,641,159	+		IAI47_17200	0.83	-0.8
3,641,160	-		IAI47_17200	0.84	-0.8
3,641,160	-		IAI47_17200	0.84	+1.2
3,641,160	-		IAI47_17200	0.84	+1.8
3,641,160	-		IAI47_17200	0.84	+0.2
3,641,160	-		IAI47_17200	0.84	+0.0
3,641,160	-		IAI47_17200	0.84	+0.9
3,641,160	-		IAI47_17200	0.84	-1.7
3,641,163	+		IAI47_17200	0.84	-0.4
3,641,163	+		IAI47_17200	0.84	-1.9
3,641,163	+		IAI47_17200	0.84	-1.1
3,641,163	+		IAI47_17200	0.84	-1.4
3,641,163	+		IAI47_17200	0.84	+1.2
3,641,164	-		IAI47_17200	0.84	+0.2
3,641,164	-		IAI47_17200	0.84	-2.3
3,641,164	-		IAI47_17200	0.84	-0.8
3,641,169	-		IAI47_17200	0.85	-0.7
3,641,169	-		IAI47_17200	0.85	-1.8
3,641,169	-		IAI47_17200	0.85	-0.4
3,641,211	+		IAI47_17200	0.89	-1.5
3,641,211	+		IAI47_17200	0.89	-0.7
3,641,211	+		IAI47_17200	0.89	-1.4
3,641,211	+		IAI47_17200	0.89	-1.2
3,641,211	+		IAI47_17200	0.89	-0.9
3,641,212	-		IAI47_17200	0.90	-1.4
3,641,212	-		IAI47_17200	0.90	-0.2
3,641,212	-		IAI47_17200	0.90	-1.2
3,641,212	-		IAI47_17200	0.90	-0.4
3,641,212	-		IAI47_17200	0.90	-1.6
3,641,212	-		IAI47_17200	0.90	-1.4
3,641,235	+				+0.2
3,641,235	+				-1.7
3,641,235	+				+0.6
3,641,235	+				-2.0
3,641,236	-				-1.8
3,641,252	+				+0.2
3,641,252	+				-0.1
3,641,253	-				+0.5
3,641,260	+				+0.6
3,641,260	+				+0.5
3,641,260	+				-0.1
3,641,260	+				-0.2
3,641,260	+				-0.8
3,641,260	+				-2.1
3,641,260	+				-0.8
3,641,261	-				+0.5
3,641,261	-				-0.4
3,641,276	+				-0.4
3,641,276	+				-1.4
3,641,277	-				+0.3
3,641,277	-				-0.4
3,641,316	+				-1.5
3,641,316	+				-0.8
3,641,364	+		IAI47_17205	0.25	-1.4
3,641,541	+		IAI47_17205	0.89	-0.8
3,641,542	-				-0.8
3,641,542	-				-3.3
3,641,542	-				-0.8
3,641,567	+				+0.7
3,641,567	+				-0.3
3,641,568	-				+3.4
3,641,575	-				-0.2
3,641,575	-				+0.5
3,641,588	-				-0.0
3,641,588	-				-0.5
3,641,588	-				+0.4
3,641,594	+				-1.4
3,641,595	-				+1.0
3,641,634	-				-0.5
3,641,658	+		IAI47_17210	0.12	-0.5
3,641,659	-		IAI47_17210	0.12	+0.2
3,641,659	-		IAI47_17210	0.12	+3.5
3,641,734	+		IAI47_17210	0.22	-0.3
3,641,752	+		IAI47_17210	0.25	-0.9
3,641,753	-		IAI47_17210	0.25	+0.2
3,641,760	+		IAI47_17210	0.26	+2.2
3,641,761	-		IAI47_17210	0.26	+0.2
3,641,761	-		IAI47_17210	0.26	+1.0
3,641,792	-		IAI47_17210	0.30	+2.1
3,641,812	+		IAI47_17210	0.33	-0.7
3,641,813	-		IAI47_17210	0.33	+0.2
3,641,820	+		IAI47_17210	0.34	-0.2
3,641,820	+		IAI47_17210	0.34	+1.6
3,641,820	+		IAI47_17210	0.34	-0.9
3,641,821	-		IAI47_17210	0.34	+1.1
3,641,821	-		IAI47_17210	0.34	-0.3
3,641,842	+		IAI47_17210	0.37	+0.2
3,641,842	+		IAI47_17210	0.37	+0.9
3,641,842	+		IAI47_17210	0.37	+0.2
3,641,842	+		IAI47_17210	0.37	-0.1
3,641,843	-		IAI47_17210	0.38	+0.9
3,641,980	+		IAI47_17210	0.57	-0.2
3,641,981	-		IAI47_17210	0.57	+1.4
3,641,981	-		IAI47_17210	0.57	+2.0
3,642,114	+		IAI47_17210	0.75	-1.4
3,642,114	+		IAI47_17210	0.75	+0.8
3,642,114	+		IAI47_17210	0.75	+0.8
3,642,114	+		IAI47_17210	0.75	+0.5
3,642,114	+		IAI47_17210	0.75	-0.8
3,642,115	-		IAI47_17210	0.75	-0.0
3,642,115	-		IAI47_17210	0.75	+0.4
3,642,115	-		IAI47_17210	0.75	-0.5
3,642,115	-		IAI47_17210	0.75	+0.1
3,642,115	-		IAI47_17210	0.75	-2.1
3,642,115	-		IAI47_17210	0.75	+2.0
3,642,119	-		IAI47_17210	0.76	-1.2
3,642,119	-		IAI47_17210	0.76	-0.0
3,642,119	-		IAI47_17210	0.76	-0.2
3,642,119	-		IAI47_17210	0.76	+0.0
3,642,131	+		IAI47_17210	0.78	+0.3
3,642,197	+		IAI47_17210	0.87	+1.2
3,642,198	-		IAI47_17210	0.87	+0.2
3,642,198	-		IAI47_17210	0.87	+0.7
3,642,202	+		IAI47_17210	0.87	+0.7
3,642,203	-		IAI47_17210	0.88	-1.0
3,642,227	+				+0.2
3,642,227	+				-0.5
3,642,227	+				-0.8
3,642,228	-				+1.2
3,642,228	-				-1.4
3,642,228	-				-1.0
3,642,228	-				+0.0
3,642,233	+				+1.9
3,642,233	+				-0.2
3,642,233	+				+1.2
3,642,233	+				+0.2
3,642,234	-				+1.8
3,642,234	-				+0.7
3,642,234	-				+1.5
3,642,259	+				-0.4
3,642,260	-				-0.7
3,642,260	-				+2.5
3,642,260	-				-0.4
3,642,260	-				-1.0
3,642,280	+				+0.5
3,642,280	+				-0.6
3,642,280	+				-0.2
3,642,280	+				-1.4
3,642,281	-				-0.3
3,642,281	-				-1.5
3,642,281	-				+0.1
3,642,281	-				+3.0
3,642,281	-				+0.5
3,642,281	-				-0.0
3,642,337	+				+1.1
3,642,337	+				+1.1
3,642,337	+				+0.9
3,642,338	-				-0.3
3,642,338	-				+0.5
3,642,338	-				+0.7
3,642,350	+				+1.1
3,642,365	-				+1.3
3,642,405	-				+0.5
3,642,445	+				+0.2
3,642,487	+				+0.5
3,642,488	-				+1.0
3,642,497	+				+1.2
3,642,512	+				-0.4
3,642,513	-				-1.4
3,642,513	-				+0.2
3,642,520	+				-0.3
3,642,521	-				-0.9
3,642,521	-				-0.9
3,642,524	-				+0.2
3,642,530	+				-0.1
3,642,533	+				+1.0
3,642,534	-				+1.2
3,642,557	+				+1.2
3,642,558	-				+0.4
3,642,563	+				-1.8
3,642,564	-				+1.0