Strain Fitness in Pantoea sp. MT58 around IAI47_17040

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
3,615,597	-		IAI47_17035	0.26	-3.0
3,615,618	-		IAI47_17035	0.31	-2.1
3,615,659	-		IAI47_17035	0.40	-2.4
3,615,807	-		IAI47_17035	0.73	-1.8
3,615,813	-		IAI47_17035	0.74	-1.4
3,615,815	-		IAI47_17035	0.75	-1.8
3,615,815	-		IAI47_17035	0.75	-2.1
3,615,815	-		IAI47_17035	0.75	-1.4
3,615,828	-		IAI47_17035	0.77	-0.8
3,615,883	-		IAI47_17035	0.90	-0.4
3,615,947	-				-1.4
3,615,960	-				-1.1
3,615,960	-				-0.0
3,615,960	-				-0.4
3,615,960	-				-1.4
3,615,960	-				-2.4
3,615,960	-				-2.6
3,615,960	-				-1.8
3,615,962	-				-0.2
3,615,970	-				+0.1
3,615,970	-				-1.1
3,615,970	-				+0.8
3,615,970	-				+1.0
3,615,970	-				+3.0
3,615,973	-				-2.4
3,615,973	-				+0.2
3,615,983	-				-1.2
3,615,983	-				+0.4
3,616,016	-				+0.7
3,616,016	-				+0.7
3,616,032	-				+1.5
3,616,032	-				+1.2
3,616,032	-				-0.3
3,616,032	-				+1.3
3,616,032	-				-0.3
3,616,108	-				+0.5
3,616,108	-				+0.2
3,616,108	-				+0.7
3,616,108	-				-0.5
3,616,108	-				+0.5
3,616,113	-				+0.6
3,616,113	-				+0.0
3,616,113	-				+2.2
3,616,113	-				+1.8
3,616,113	-				+1.1
3,616,113	-				+0.6
3,616,113	-				+1.6
3,616,113	-				+1.2
3,616,115	-				+1.5
3,616,115	-				+1.2
3,616,115	-				+2.5
3,616,115	-				+0.2
3,616,115	-				+2.2
3,616,115	-				+0.2
3,616,236	-				+0.3
3,616,236	-				+0.1
3,616,236	-				+0.8
3,616,239	-				+0.2
3,616,239	-				+0.2
3,616,268	-				+0.9
3,616,268	-				+0.4
3,616,268	-				+0.4
3,616,268	-				-0.3
3,616,268	-				-0.4
3,616,268	-				-0.1
3,616,271	-				-0.2
3,616,271	-				+2.2
3,616,271	-				+0.7
3,616,271	-				+0.8
3,616,403	-				-0.5
3,616,403	-				-2.1
3,616,403	-				-0.8
3,616,403	-				-1.2
3,616,403	-				-1.7
3,616,403	-				+0.6
3,616,403	-				+0.2
3,616,403	-				-1.3
3,616,403	-				-0.4
3,616,403	-				+0.7
3,616,403	-				-2.4
3,616,403	-				-1.4
3,616,403	-				-0.1
3,616,407	-				+3.7
3,616,407	-				+1.1
3,616,407	-				+0.5
3,616,407	-				+0.2
3,616,413	-				-0.6
3,616,413	-				-0.0
3,616,413	-				-0.4
3,616,428	-				+0.2
3,616,512	-		IAI47_17050	0.33	+1.0
3,616,512	-		IAI47_17050	0.33	+0.2
3,616,512	-		IAI47_17050	0.33	-0.3
3,616,512	-		IAI47_17050	0.33	+0.8
3,616,512	-		IAI47_17050	0.33	+1.2
3,616,512	-		IAI47_17050	0.33	-0.5
3,616,512	-		IAI47_17050	0.33	+1.5
3,616,575	-		IAI47_17050	0.51	+0.9
3,616,575	-		IAI47_17050	0.51	+1.9
3,616,575	-		IAI47_17050	0.51	+0.3
3,616,578	-		IAI47_17050	0.52	+1.2
3,616,578	-		IAI47_17050	0.52	-0.5
3,616,620	-		IAI47_17050	0.65	-0.3
3,616,701	-		IAI47_17050	0.88	-1.5
3,616,701	-		IAI47_17050	0.88	-0.4
3,616,705	-		IAI47_17050	0.90	+0.8
3,616,705	-		IAI47_17050	0.90	-0.5
3,616,705	-		IAI47_17050	0.90	+0.7
3,616,705	-		IAI47_17050	0.90	+0.2
3,616,705	-		IAI47_17050	0.90	-0.3
3,616,705	-		IAI47_17050	0.90	-1.1
3,616,705	-		IAI47_17050	0.90	+0.5
3,616,705	-		IAI47_17050	0.90	+1.2
3,616,705	-		IAI47_17050	0.90	+1.0
3,616,705	-		IAI47_17050	0.90	-0.3
3,616,723	-				+1.2
3,616,723	-				+0.9
3,616,736	-				+0.6
3,616,736	-				-0.4
3,616,736	-				-0.8
3,616,736	-				-0.1
3,616,736	-				-0.4
3,616,740	-				+0.2
3,616,740	-				+2.2
3,616,740	-				+0.7
3,616,740	-				-0.8
3,616,740	-				-0.3
3,616,740	-				+0.4
3,616,769	-				-0.5
3,616,769	-				+0.0
3,616,775	-				-0.2
3,616,872	-				-2.4
3,616,917	-				-0.8
3,616,950	-				+0.5
3,616,957	+				-2.1
3,616,957	+				-2.6
3,616,958	-				+0.7