Strain Fitness in Pantoea sp. MT58 around IAI47_16500

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
3,495,304	-		IAI47_16495	0.35	-0.6
3,495,423	+		IAI47_16495	0.43	+0.2
3,495,423	+		IAI47_16495	0.43	+1.4
3,495,529	+		IAI47_16495	0.50	+1.5
3,495,529	+		IAI47_16495	0.50	-0.8
3,495,529	+		IAI47_16495	0.50	-1.4
3,495,529	+		IAI47_16495	0.50	-0.2
3,495,530	-		IAI47_16495	0.50	-0.4
3,495,530	-		IAI47_16495	0.50	+0.2
3,495,530	-		IAI47_16495	0.50	-0.6
3,495,530	-		IAI47_16495	0.50	+0.5
3,495,530	-		IAI47_16495	0.50	+0.1
3,495,549	+		IAI47_16495	0.52	-0.1
3,495,555	+		IAI47_16495	0.52	-0.8
3,495,555	+		IAI47_16495	0.52	+0.8
3,495,555	+		IAI47_16495	0.52	+0.2
3,495,555	+		IAI47_16495	0.52	-1.0
3,495,555	+		IAI47_16495	0.52	+1.2
3,495,555	+		IAI47_16495	0.52	-0.5
3,495,555	+		IAI47_16495	0.52	-0.3
3,495,555	+		IAI47_16495	0.52	+1.6
3,495,556	-		IAI47_16495	0.52	-0.2
3,495,556	-		IAI47_16495	0.52	+0.6
3,495,556	-		IAI47_16495	0.52	-0.8
3,495,556	-		IAI47_16495	0.52	+0.2
3,495,556	-		IAI47_16495	0.52	-0.3
3,495,567	+		IAI47_16495	0.53	-0.2
3,495,568	-		IAI47_16495	0.53	-0.1
3,495,664	-		IAI47_16495	0.60	+0.2
3,495,776	+		IAI47_16495	0.68	+0.9
3,495,780	+		IAI47_16495	0.68	+1.8
3,495,780	+		IAI47_16495	0.68	+0.1
3,495,780	+		IAI47_16495	0.68	+1.2
3,495,781	-		IAI47_16495	0.68	-0.0
3,495,781	-		IAI47_16495	0.68	+0.2
3,495,792	+		IAI47_16495	0.69	+3.8
3,495,792	+		IAI47_16495	0.69	-0.6
3,495,792	+		IAI47_16495	0.69	-0.8
3,495,793	-		IAI47_16495	0.69	+0.9
3,495,793	-		IAI47_16495	0.69	+0.2
3,495,793	-		IAI47_16495	0.69	+0.1
3,495,793	-		IAI47_16495	0.69	+0.4
3,495,793	-		IAI47_16495	0.69	-0.4
3,495,793	-		IAI47_16495	0.69	-0.5
3,495,793	-		IAI47_16495	0.69	+0.1
3,495,793	-		IAI47_16495	0.69	-1.0
3,495,793	-		IAI47_16495	0.69	+1.2
3,495,793	-		IAI47_16495	0.69	+0.9
3,495,793	-		IAI47_16495	0.69	-0.4
3,495,826	+		IAI47_16495	0.71	-0.2
3,495,826	+		IAI47_16495	0.71	-0.1
3,495,826	+		IAI47_16495	0.71	+1.6
3,495,826	+		IAI47_16495	0.71	-0.5
3,495,826	+		IAI47_16495	0.71	-1.1
3,495,826	+		IAI47_16495	0.71	+0.3
3,495,826	+		IAI47_16495	0.71	+1.0
3,495,826	+		IAI47_16495	0.71	-0.1
3,495,827	-		IAI47_16495	0.71	+0.2
3,495,827	-		IAI47_16495	0.71	-0.4
3,495,827	-		IAI47_16495	0.71	-0.1
3,495,827	-		IAI47_16495	0.71	-0.8
3,495,827	-		IAI47_16495	0.71	-0.2
3,495,827	-		IAI47_16495	0.71	+0.6
3,495,827	-		IAI47_16495	0.71	-1.4
3,495,827	-		IAI47_16495	0.71	-0.8
3,495,827	-		IAI47_16495	0.71	+1.2
3,495,827	-		IAI47_16495	0.71	+0.4
3,495,827	-		IAI47_16495	0.71	+0.6
3,495,846	+		IAI47_16495	0.73	+0.4
3,495,847	-		IAI47_16495	0.73	+0.5
3,495,946	+		IAI47_16495	0.80	+0.8
3,495,946	+		IAI47_16495	0.80	-0.0
3,495,946	+		IAI47_16495	0.80	+0.2
3,495,946	+		IAI47_16495	0.80	-0.3
3,495,946	+		IAI47_16495	0.80	-0.2
3,495,946	+		IAI47_16495	0.80	+0.2
3,495,946	+		IAI47_16495	0.80	-0.6
3,495,946	+		IAI47_16495	0.80	+0.8
3,495,946	+		IAI47_16495	0.80	-0.5
3,495,946	+		IAI47_16495	0.80	+0.4
3,495,946	+		IAI47_16495	0.80	-0.4
3,495,947	-		IAI47_16495	0.80	+0.1
3,495,947	-		IAI47_16495	0.80	-0.0
3,495,947	-		IAI47_16495	0.80	+0.2
3,495,947	-		IAI47_16495	0.80	+0.3
3,495,947	-		IAI47_16495	0.80	+3.0
3,495,947	-		IAI47_16495	0.80	+0.1
3,495,947	-		IAI47_16495	0.80	-2.1
3,495,947	-		IAI47_16495	0.80	-1.4
3,495,947	-		IAI47_16495	0.80	+2.2
3,495,947	-		IAI47_16495	0.80	+0.2
3,495,947	-		IAI47_16495	0.80	+0.9
3,495,947	-		IAI47_16495	0.80	-0.4
3,495,947	-		IAI47_16495	0.80	+0.7
3,495,966	+		IAI47_16495	0.81	+2.2
3,495,966	+		IAI47_16495	0.81	-1.2
3,495,967	-		IAI47_16495	0.81	+0.3
3,495,988	+		IAI47_16495	0.83	-0.5
3,495,989	-		IAI47_16495	0.83	-0.2
3,496,119	+				-1.1
3,496,144	+				+0.2
3,496,145	-				-0.4
3,496,145	-				-0.4
3,496,209	+				-0.6
3,496,210	-				-0.4
3,496,210	-				+0.4
3,496,210	-				+0.2
3,496,234	+				-0.4
3,496,235	-				+0.9
3,496,235	-				-0.7
3,496,241	+				-0.3
3,496,241	+				+0.0
3,496,242	-				+1.1
3,496,242	-				-0.8
3,496,242	-				-0.3
3,496,242	-				+0.5
3,496,248	+				-2.1
3,496,248	+				+0.1
3,496,248	+				-0.0
3,496,249	-				+0.2
3,496,249	-				-0.7
3,496,249	-				+0.6
3,496,249	-				+0.5
3,496,249	-				-0.1
3,496,249	-				+0.4
3,496,249	-				+0.1
3,496,249	-				+1.2
3,496,429	-		IAI47_16500	0.22	+1.0
3,496,429	-		IAI47_16500	0.22	-1.0
3,496,469	-		IAI47_16500	0.26	-0.7
3,496,469	-		IAI47_16500	0.26	-3.0
3,496,469	-		IAI47_16500	0.26	+1.3
3,496,518	+		IAI47_16500	0.32	+0.2
3,496,518	+		IAI47_16500	0.32	+0.2
3,496,530	-		IAI47_16500	0.33	+0.2
3,496,574	+		IAI47_16500	0.39	+0.3
3,496,574	+		IAI47_16500	0.39	+0.8
3,496,574	+		IAI47_16500	0.39	+0.2
3,496,603	+		IAI47_16500	0.42	-0.2
3,496,604	-		IAI47_16500	0.42	-0.3
3,496,604	-		IAI47_16500	0.42	-0.4
3,496,616	+		IAI47_16500	0.43	-1.8
3,496,616	+		IAI47_16500	0.43	-1.2
3,496,616	+		IAI47_16500	0.43	-0.2
3,496,617	-		IAI47_16500	0.44	-0.1
3,496,617	-		IAI47_16500	0.44	+2.0
3,496,617	-		IAI47_16500	0.44	-1.5
3,496,695	+		IAI47_16500	0.53	-0.1
3,496,695	+		IAI47_16500	0.53	+0.2
3,496,695	+		IAI47_16500	0.53	-0.8
3,496,697	+		IAI47_16500	0.53	-0.3
3,496,727	-		IAI47_16500	0.56	+0.2
3,496,727	-		IAI47_16500	0.56	+0.6
3,496,727	-		IAI47_16500	0.56	-0.3
3,496,745	+		IAI47_16500	0.58	-0.9
3,496,783	-		IAI47_16500	0.63	-0.8
3,496,835	+		IAI47_16500	0.69	+0.5
3,496,835	+		IAI47_16500	0.69	+1.1
3,496,836	-		IAI47_16500	0.69	-0.4
3,496,836	-		IAI47_16500	0.69	+0.7
3,496,836	-		IAI47_16500	0.69	+0.4
3,496,836	-		IAI47_16500	0.69	+0.5
3,496,847	+		IAI47_16500	0.70	-0.1
3,496,928	+		IAI47_16500	0.80	-0.8
3,496,928	+		IAI47_16500	0.80	+0.1
3,496,929	-		IAI47_16500	0.80	-0.8
3,496,929	-		IAI47_16500	0.80	+0.4
3,496,929	-		IAI47_16500	0.80	+0.5
3,496,929	-		IAI47_16500	0.80	-0.2
3,496,929	-		IAI47_16500	0.80	+0.8
3,496,929	-		IAI47_16500	0.80	-0.1
3,496,931	+		IAI47_16500	0.80	-0.1
3,496,932	-		IAI47_16500	0.80	+0.7
3,497,003	+		IAI47_16500	0.88	+1.0
3,497,003	+		IAI47_16500	0.88	-0.8
3,497,004	-		IAI47_16500	0.89	-0.3
3,497,004	-		IAI47_16500	0.89	+0.8
3,497,004	-		IAI47_16500	0.89	+1.0
3,497,004	-		IAI47_16500	0.89	-1.0
3,497,069	+				+1.1
3,497,069	+				+1.0
3,497,070	-				-0.0
3,497,094	+				-0.2
3,497,095	-				+0.6
3,497,101	-				+1.2
3,497,119	+				+0.0
3,497,119	+				+0.6
3,497,120	-				-0.8
3,497,120	-				+1.2
3,497,177	+				+0.6
3,497,178	-				+0.1
3,497,256	+				-0.7
3,497,257	-				-0.7
3,497,257	-				+0.3
3,497,259	+				-0.1
3,497,259	+				-0.2
3,497,259	+				-0.2
3,497,259	+				-2.0
3,497,259	+				+0.4
3,497,259	+				+0.5
3,497,259	+				-1.1
3,497,259	+				-0.4
3,497,259	+				-0.8
3,497,259	+				-1.2
3,497,259	+				-0.5
3,497,259	+				+1.2
3,497,260	-				+0.4
3,497,260	-				+0.4
3,497,260	-				+0.6
3,497,260	-				-1.5
3,497,260	-				-0.8
3,497,260	-				+1.4
3,497,260	-				+0.5
3,497,260	-				+0.0
3,497,260	-				+0.6
3,497,293	+		IAI47_16505	0.12	-0.8
3,497,293	+		IAI47_16505	0.12	+0.2
3,497,293	+		IAI47_16505	0.12	+1.0
3,497,293	+		IAI47_16505	0.12	-1.2
3,497,293	+		IAI47_16505	0.12	-0.8
3,497,296	+		IAI47_16505	0.12	-1.4
3,497,321	+		IAI47_16505	0.16	-1.0
3,497,322	-		IAI47_16505	0.17	-0.5
3,497,393	+		IAI47_16505	0.29	-0.2
3,497,393	+		IAI47_16505	0.29	-0.2
3,497,393	+		IAI47_16505	0.29	+2.2
3,497,393	+		IAI47_16505	0.29	-0.2
3,497,393	+		IAI47_16505	0.29	-0.5
3,497,393	+		IAI47_16505	0.29	-0.1
3,497,393	+		IAI47_16505	0.29	+0.5
3,497,393	+		IAI47_16505	0.29	-1.4
3,497,393	+		IAI47_16505	0.29	+0.0
3,497,393	+		IAI47_16505	0.29	+1.2
3,497,393	+		IAI47_16505	0.29	+0.2
3,497,394	-		IAI47_16505	0.29	-0.5
3,497,394	-		IAI47_16505	0.29	-0.4
3,497,394	-		IAI47_16505	0.29	+0.1
3,497,394	-		IAI47_16505	0.29	-0.5
3,497,394	-		IAI47_16505	0.29	+0.4
3,497,394	-		IAI47_16505	0.29	+0.5
3,497,394	-		IAI47_16505	0.29	+0.1
3,497,394	-		IAI47_16505	0.29	+0.5
3,497,394	-		IAI47_16505	0.29	-0.6
3,497,394	-		IAI47_16505	0.29	-0.3
3,497,397	+		IAI47_16505	0.29	-0.2
3,497,397	+		IAI47_16505	0.29	-0.5
3,497,397	+		IAI47_16505	0.29	-1.0
3,497,397	+		IAI47_16505	0.29	-0.6
3,497,397	+		IAI47_16505	0.29	+0.2
3,497,397	+		IAI47_16505	0.29	+0.5
3,497,398	-		IAI47_16505	0.30	+0.8
3,497,398	-		IAI47_16505	0.30	+2.5
3,497,398	-		IAI47_16505	0.30	+0.4
3,497,398	-		IAI47_16505	0.30	-0.2
3,497,440	+		IAI47_16505	0.37	-1.6
3,497,440	+		IAI47_16505	0.37	-0.3
3,497,440	+		IAI47_16505	0.37	-1.0
3,497,440	+		IAI47_16505	0.37	+0.0
3,497,440	+		IAI47_16505	0.37	+1.2
3,497,440	+		IAI47_16505	0.37	-0.1
3,497,440	+		IAI47_16505	0.37	+1.7
3,497,440	+		IAI47_16505	0.37	+0.2
3,497,440	+		IAI47_16505	0.37	-0.8
3,497,440	+		IAI47_16505	0.37	-1.4
3,497,440	+		IAI47_16505	0.37	-0.8
3,497,440	+		IAI47_16505	0.37	+3.5
3,497,441	-		IAI47_16505	0.37	-0.8
3,497,441	-		IAI47_16505	0.37	+0.1
3,497,441	-		IAI47_16505	0.37	+0.5
3,497,441	-		IAI47_16505	0.37	-0.6
3,497,441	-		IAI47_16505	0.37	+0.2
3,497,441	-		IAI47_16505	0.37	-0.8
3,497,441	-		IAI47_16505	0.37	-3.3
3,497,441	-		IAI47_16505	0.37	+1.1
3,497,441	-		IAI47_16505	0.37	-0.0
3,497,441	-		IAI47_16505	0.37	-0.4
3,497,441	-		IAI47_16505	0.37	+0.5
3,497,441	-		IAI47_16505	0.37	+0.2
3,497,441	-		IAI47_16505	0.37	-0.2
3,497,441	-		IAI47_16505	0.37	-0.2
3,497,442	+		IAI47_16505	0.37	+0.5
3,497,443	-		IAI47_16505	0.37	-1.1
3,497,465	-		IAI47_16505	0.41	+2.2
3,497,500	+		IAI47_16505	0.47	-0.5
3,497,500	+		IAI47_16505	0.47	-0.1
3,497,500	+		IAI47_16505	0.47	-0.4
3,497,500	+		IAI47_16505	0.47	-0.5
3,497,500	+		IAI47_16505	0.47	-1.0
3,497,501	-		IAI47_16505	0.47	+0.5
3,497,501	-		IAI47_16505	0.47	-0.2
3,497,501	-		IAI47_16505	0.47	-0.5
3,497,540	+		IAI47_16505	0.54	+0.2
3,497,540	+		IAI47_16505	0.54	-0.0
3,497,541	-		IAI47_16505	0.54	+1.2
3,497,541	-		IAI47_16505	0.54	+1.4
3,497,541	-		IAI47_16505	0.54	+0.0
3,497,541	-		IAI47_16505	0.54	-1.5
3,497,541	-		IAI47_16505	0.54	-0.1
3,497,575	+		IAI47_16505	0.60	-0.5
3,497,575	+		IAI47_16505	0.60	+0.8
3,497,575	+		IAI47_16505	0.60	+1.2
3,497,576	-		IAI47_16505	0.60	+0.4
3,497,576	-		IAI47_16505	0.60	+1.0
3,497,576	-		IAI47_16505	0.60	+0.2
3,497,576	-		IAI47_16505	0.60	+0.8
3,497,576	-		IAI47_16505	0.60	+0.2
3,497,576	-		IAI47_16505	0.60	+0.3
3,497,615	+		IAI47_16505	0.67	-0.7
3,497,615	+		IAI47_16505	0.67	+1.8
3,497,616	-		IAI47_16505	0.67	+1.5
3,497,630	+		IAI47_16505	0.69	+0.7
3,497,630	+		IAI47_16505	0.69	-0.8
3,497,631	-		IAI47_16505	0.69	+0.9
3,497,647	+		IAI47_16505	0.72	+0.4
3,497,647	+		IAI47_16505	0.72	-0.8
3,497,647	+		IAI47_16505	0.72	+1.5
3,497,648	-		IAI47_16505	0.72	-0.7
3,497,656	+		IAI47_16505	0.74	-0.9
3,497,656	+		IAI47_16505	0.74	+0.5
3,497,657	-		IAI47_16505	0.74	+0.2
3,497,674	-		IAI47_16505	0.77	+1.8
3,497,674	-		IAI47_16505	0.77	+0.7
3,497,674	-		IAI47_16505	0.77	+0.1
3,497,749	+		IAI47_16505	0.90	+0.8
3,497,749	+		IAI47_16505	0.90	+0.2
3,497,749	+		IAI47_16505	0.90	+1.4
3,497,749	+		IAI47_16505	0.90	-0.3
3,497,749	+		IAI47_16505	0.90	-0.2
3,497,749	+		IAI47_16505	0.90	-0.5
3,497,749	+		IAI47_16505	0.90	+0.6
3,497,750	-		IAI47_16505	0.90	+2.0
3,497,750	-		IAI47_16505	0.90	+1.0
3,497,750	-		IAI47_16505	0.90	+2.2
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