Strain Fitness in Pantoea sp. MT58 around IAI47_16420

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
3,476,117	-		IAI47_16415	0.15	-0.9
3,476,138	+		IAI47_16415	0.17	-0.8
3,476,138	+		IAI47_16415	0.17	+0.2
3,476,138	+		IAI47_16415	0.17	-0.0
3,476,138	+		IAI47_16415	0.17	-0.9
3,476,139	-		IAI47_16415	0.18	+0.2
3,476,139	-		IAI47_16415	0.18	-0.4
3,476,139	-		IAI47_16415	0.18	-0.8
3,476,139	-		IAI47_16415	0.18	+1.5
3,476,139	-		IAI47_16415	0.18	+0.4
3,476,253	+		IAI47_16415	0.29	-0.7
3,476,253	+		IAI47_16415	0.29	+0.4
3,476,253	+		IAI47_16415	0.29	-1.4
3,476,253	+		IAI47_16415	0.29	+0.2
3,476,253	+		IAI47_16415	0.29	-0.7
3,476,253	+		IAI47_16415	0.29	+0.7
3,476,253	+		IAI47_16415	0.29	-0.1
3,476,254	-		IAI47_16415	0.29	+0.3
3,476,254	-		IAI47_16415	0.29	+1.2
3,476,254	-		IAI47_16415	0.29	-0.5
3,476,314	+		IAI47_16415	0.35	+0.8
3,476,314	+		IAI47_16415	0.35	-0.5
3,476,314	+		IAI47_16415	0.35	-0.5
3,476,314	+		IAI47_16415	0.35	+0.2
3,476,314	+		IAI47_16415	0.35	-0.6
3,476,314	+		IAI47_16415	0.35	+0.2
3,476,315	-		IAI47_16415	0.35	-0.2
3,476,315	-		IAI47_16415	0.35	-0.7
3,476,315	-		IAI47_16415	0.35	+0.3
3,476,315	-		IAI47_16415	0.35	+1.2
3,476,315	-		IAI47_16415	0.35	-0.1
3,476,315	-		IAI47_16415	0.35	+0.3
3,476,399	+		IAI47_16415	0.44	+0.4
3,476,399	+		IAI47_16415	0.44	-1.0
3,476,399	+		IAI47_16415	0.44	+0.2
3,476,399	+		IAI47_16415	0.44	+2.0
3,476,399	+		IAI47_16415	0.44	+1.5
3,476,400	-		IAI47_16415	0.44	+1.8
3,476,400	-		IAI47_16415	0.44	+0.4
3,476,400	-		IAI47_16415	0.44	+0.8
3,476,400	-		IAI47_16415	0.44	+1.5
3,476,446	+		IAI47_16415	0.48	+2.0
3,476,446	+		IAI47_16415	0.48	-0.1
3,476,447	-		IAI47_16415	0.48	+0.4
3,476,447	-		IAI47_16415	0.48	-0.2
3,476,447	-		IAI47_16415	0.48	-0.8
3,476,447	-		IAI47_16415	0.48	-0.4
3,476,447	-		IAI47_16415	0.48	+0.4
3,476,447	-		IAI47_16415	0.48	-0.1
3,476,448	+		IAI47_16415	0.49	+0.2
3,476,448	+		IAI47_16415	0.49	+1.3
3,476,448	+		IAI47_16415	0.49	-0.8
3,476,448	+		IAI47_16415	0.49	+0.5
3,476,448	+		IAI47_16415	0.49	-0.4
3,476,448	+		IAI47_16415	0.49	-0.6
3,476,448	+		IAI47_16415	0.49	-1.4
3,476,448	+		IAI47_16415	0.49	+1.4
3,476,449	-		IAI47_16415	0.49	+0.4
3,476,449	-		IAI47_16415	0.49	-0.8
3,476,449	-		IAI47_16415	0.49	-0.6
3,476,449	-		IAI47_16415	0.49	+1.8
3,476,449	-		IAI47_16415	0.49	-0.9
3,476,461	+		IAI47_16415	0.50	+0.8
3,476,461	+		IAI47_16415	0.50	+1.2
3,476,462	-		IAI47_16415	0.50	+1.3
3,476,462	-		IAI47_16415	0.50	-0.4
3,476,462	-		IAI47_16415	0.50	+1.0
3,476,567	-		IAI47_16415	0.61	+1.5
3,476,567	-		IAI47_16415	0.61	-0.0
3,476,567	-		IAI47_16415	0.61	-1.4
3,476,695	+		IAI47_16415	0.73	+0.9
3,476,696	-		IAI47_16415	0.73	-0.5
3,476,732	+		IAI47_16415	0.77	+0.4
3,476,824	+		IAI47_16415	0.86	-0.4
3,476,824	+		IAI47_16415	0.86	+1.4
3,476,824	+		IAI47_16415	0.86	+0.5
3,476,824	+		IAI47_16415	0.86	+0.9
3,476,825	-		IAI47_16415	0.86	-0.3
3,476,825	-		IAI47_16415	0.86	-0.3
3,476,825	-		IAI47_16415	0.86	+0.7
3,476,825	-		IAI47_16415	0.86	+2.0
3,476,825	-		IAI47_16415	0.86	-0.8
3,476,839	+		IAI47_16415	0.88	+1.4
3,476,839	+		IAI47_16415	0.88	-0.2
3,476,846	+		IAI47_16415	0.89	+0.2
3,476,847	-		IAI47_16415	0.89	+0.5
3,476,847	-		IAI47_16415	0.89	+1.4
3,476,847	-		IAI47_16415	0.89	+1.1
3,476,873	+				+0.6
3,476,873	+				+2.5
3,476,874	-				+1.9
3,476,874	-				-0.6
3,476,874	-				+0.3
3,476,874	-				+0.2
3,476,944	+				+2.0
3,476,945	-				-1.1
3,476,945	-				-0.2
3,476,945	-				+2.2
3,476,959	+				+0.4
3,476,960	-				+1.1
3,476,965	+				+1.2
3,476,965	+				-1.8
3,476,965	+				+1.4
3,476,966	-				-0.1
3,476,972	+				-0.8
3,476,972	+				+0.7
3,476,972	+				+0.8
3,476,972	+				+0.8
3,476,973	-				+0.5
3,476,973	-				+0.2
3,476,973	-				-0.7
3,477,020	+				-3.6
3,477,020	+				-3.2
3,477,020	+				-3.7
3,477,021	-				-3.1
3,477,021	-				-3.0
3,477,118	+		IAI47_16420	0.14	-3.3
3,477,119	-		IAI47_16420	0.14	-3.7
3,477,157	-		IAI47_16420	0.18	-3.5
3,477,241	-		IAI47_16420	0.26	-2.3
3,477,247	-		IAI47_16420	0.27	-1.8
3,477,247	-		IAI47_16420	0.27	-1.8
3,477,247	-		IAI47_16420	0.27	-5.7
3,477,282	+		IAI47_16420	0.30	-2.8
3,477,282	+		IAI47_16420	0.30	-2.0
3,477,282	+		IAI47_16420	0.30	-2.1
3,477,283	-		IAI47_16420	0.30	-3.0
3,477,283	-		IAI47_16420	0.30	-3.6
3,477,299	+		IAI47_16420	0.32	-0.8
3,477,300	-		IAI47_16420	0.32	-2.6
3,477,317	+		IAI47_16420	0.34	-1.7
3,477,317	+		IAI47_16420	0.34	-2.6
3,477,318	-		IAI47_16420	0.34	-2.4
3,477,318	-		IAI47_16420	0.34	-3.7
3,477,318	-		IAI47_16420	0.34	-4.0
3,477,318	-		IAI47_16420	0.34	-3.3
3,477,411	+		IAI47_16420	0.43	-2.1
3,477,412	-		IAI47_16420	0.43	-1.6
3,477,412	-		IAI47_16420	0.43	-3.7
3,477,412	-		IAI47_16420	0.43	-2.8
3,477,429	+		IAI47_16420	0.45	-3.5
3,477,430	-		IAI47_16420	0.45	-3.1
3,477,457	+		IAI47_16420	0.48	-2.6
3,477,457	+		IAI47_16420	0.48	-1.6
3,477,458	-		IAI47_16420	0.48	-2.5
3,477,458	-		IAI47_16420	0.48	-2.4
3,477,472	+		IAI47_16420	0.49	-0.4
3,477,472	+		IAI47_16420	0.49	-3.0
3,477,513	+		IAI47_16420	0.53	-2.8
3,477,513	+		IAI47_16420	0.53	-3.6
3,477,579	-		IAI47_16420	0.59	-2.4
3,477,584	+		IAI47_16420	0.60	-2.1
3,477,584	+		IAI47_16420	0.60	-2.6
3,477,584	+		IAI47_16420	0.60	-4.3
3,477,584	+		IAI47_16420	0.60	-0.8
3,477,584	+		IAI47_16420	0.60	-2.5
3,477,584	+		IAI47_16420	0.60	-2.4
3,477,584	+		IAI47_16420	0.60	-2.6
3,477,584	+		IAI47_16420	0.60	-2.9
3,477,585	-		IAI47_16420	0.60	-1.8
3,477,585	-		IAI47_16420	0.60	-2.1
3,477,585	-		IAI47_16420	0.60	-4.6
3,477,585	-		IAI47_16420	0.60	-1.8
3,477,585	-		IAI47_16420	0.60	-3.9
3,477,585	-		IAI47_16420	0.60	-1.4
3,477,585	-		IAI47_16420	0.60	-0.8
3,477,585	-		IAI47_16420	0.60	-4.1
3,477,608	+		IAI47_16420	0.62	-3.6
3,477,608	+		IAI47_16420	0.62	-2.1
3,477,608	+		IAI47_16420	0.62	-2.9
3,477,608	+		IAI47_16420	0.62	-2.1
3,477,633	+		IAI47_16420	0.65	-4.0
3,477,696	+		IAI47_16420	0.71	-1.3
3,477,696	+		IAI47_16420	0.71	-3.3
3,477,696	+		IAI47_16420	0.71	-2.9
3,477,697	-		IAI47_16420	0.71	-4.5
3,477,697	-		IAI47_16420	0.71	-2.3
3,477,697	-		IAI47_16420	0.71	-5.0
3,477,697	-		IAI47_16420	0.71	+0.2
3,477,765	+		IAI47_16420	0.78	-2.3
3,477,766	-		IAI47_16420	0.78	-2.8
3,477,768	+		IAI47_16420	0.78	-3.9
3,477,768	+		IAI47_16420	0.78	-5.0
3,477,768	+		IAI47_16420	0.78	-0.5
3,477,769	-		IAI47_16420	0.78	+1.2
3,477,769	-		IAI47_16420	0.78	-4.6
3,477,769	-		IAI47_16420	0.78	-5.2
3,477,769	-		IAI47_16420	0.78	-4.2
3,477,795	+		IAI47_16420	0.81	-2.6
3,477,795	+		IAI47_16420	0.81	-3.1
3,477,795	+		IAI47_16420	0.81	-2.3
3,477,795	+		IAI47_16420	0.81	-2.8
3,477,795	+		IAI47_16420	0.81	-0.8
3,477,795	+		IAI47_16420	0.81	-0.3
3,477,795	+		IAI47_16420	0.81	-4.3
3,477,795	+		IAI47_16420	0.81	-2.7
3,477,795	+		IAI47_16420	0.81	-1.8
3,477,795	+		IAI47_16420	0.81	-2.1
3,477,796	-		IAI47_16420	0.81	-2.1
3,477,796	-		IAI47_16420	0.81	-1.8
3,477,798	+		IAI47_16420	0.81	-1.7
3,477,849	+		IAI47_16420	0.86	-1.0
3,477,850	-		IAI47_16420	0.86	-4.2
3,477,863	-		IAI47_16420	0.87	-1.8
3,477,906	+				-3.3
3,477,906	+				-3.3
3,477,906	+				-4.2
3,477,914	+				-1.8
3,477,914	+				-4.1
3,477,914	+				-1.3
3,477,914	+				-1.4
3,477,914	+				-3.7
3,477,914	+				-2.6
3,477,914	+				-2.5
3,477,914	+				-2.9
3,477,914	+				-0.6
3,477,914	+				-0.8
3,477,914	+				-2.5
3,477,915	-				-2.8
3,477,915	-				-4.2
3,477,915	-				-2.0
3,477,915	-				-5.4
3,477,915	-				-3.0
3,477,915	-				-0.8
3,477,915	-				-2.4
3,477,915	-				-1.1
3,477,915	-				-1.8
3,477,915	-				-3.1
3,477,987	+				-2.0
3,477,987	+				-2.9
3,477,988	-				-1.9
3,477,988	-				-1.4
3,477,988	-				-0.8
3,477,988	-				-1.4
3,477,988	-				-4.5
3,478,024	+				-1.0
3,478,025	-				+0.2
3,478,073	+				-3.0
3,478,073	+				-0.8
3,478,074	-				-1.1
3,478,079	+				-0.7
3,478,079	+				+0.7
3,478,079	+				+1.6
3,478,079	+				-0.1
3,478,079	+				-0.9
3,478,079	+				-0.3
3,478,079	+				-0.9
3,478,079	+				-0.7
3,478,080	-				-3.1
3,478,080	-				+0.8
3,478,080	-				+1.2
3,478,080	-				+0.4
3,478,137	+				-1.6
3,478,137	+				-1.2
3,478,137	+				-1.0
3,478,137	+				-0.8
3,478,138	-				+0.6
3,478,140	+				-1.0
3,478,140	+				-2.4
3,478,140	+				-1.1
3,478,140	+				-2.1
3,478,141	-				-0.8
3,478,141	-				-0.6
3,478,141	-				+0.0
3,478,141	-				-0.4
3,478,172	+				-2.0
3,478,172	+				+2.0
3,478,173	-				+1.4
3,478,200	+				-1.4
3,478,201	-				+0.7
3,478,201	-				-0.8
3,478,201	-				-0.2
3,478,201	-				-0.0
3,478,202	+				-0.9
3,478,202	+				+0.0
3,478,202	+				-0.8
3,478,202	+				+0.3
3,478,203	-				+1.1
3,478,203	-				-0.3
3,478,203	-				-0.1
3,478,203	-				+0.2
3,478,203	-				-0.8
3,478,212	+				+1.5
3,478,213	-				+0.2
3,478,213	-				+0.4
3,478,213	-				+0.2
3,478,213	-				-0.0
3,478,213	-				-0.2
3,478,213	-				-0.0
3,478,284	+		IAI47_16425	0.15	-0.8
3,478,285	-		IAI47_16425	0.15	-1.4
3,478,285	-		IAI47_16425	0.15	-0.6
3,478,286	+		IAI47_16425	0.15	+0.8
3,478,287	-		IAI47_16425	0.15	-0.5
3,478,287	-		IAI47_16425	0.15	-0.1
3,478,363	-		IAI47_16425	0.21	+2.4
3,478,405	-		IAI47_16425	0.24	+0.2
3,478,416	+		IAI47_16425	0.24	+1.8
3,478,416	+		IAI47_16425	0.24	-0.9
3,478,416	+		IAI47_16425	0.24	+0.5
3,478,417	-		IAI47_16425	0.24	+0.2
3,478,417	-		IAI47_16425	0.24	-0.8
3,478,417	-		IAI47_16425	0.24	-0.8
3,478,433	+		IAI47_16425	0.26	+1.2
3,478,434	-		IAI47_16425	0.26	-0.1
3,478,434	-		IAI47_16425	0.26	+1.3
3,478,434	-		IAI47_16425	0.26	+0.2
3,478,464	-		IAI47_16425	0.28	+0.3
3,478,464	-		IAI47_16425	0.28	+1.2
3,478,505	-		IAI47_16425	0.31	-0.8
3,478,558	+		IAI47_16425	0.35	+0.9
3,478,559	-		IAI47_16425	0.35	+0.9
3,478,566	+		IAI47_16425	0.35	+0.9
3,478,566	+		IAI47_16425	0.35	+0.4
3,478,567	-		IAI47_16425	0.35	-1.5
3,478,567	-		IAI47_16425	0.35	-0.3
3,478,567	-		IAI47_16425	0.35	-0.1
3,478,567	-		IAI47_16425	0.35	-1.4
3,478,567	-		IAI47_16425	0.35	+0.2
3,478,567	-		IAI47_16425	0.35	-1.1
3,478,592	+		IAI47_16425	0.37	+0.2
3,478,592	+		IAI47_16425	0.37	-0.6
3,478,593	-		IAI47_16425	0.37	-0.8
3,478,619	+		IAI47_16425	0.39	+0.4
3,478,619	+		IAI47_16425	0.39	-0.8
3,478,619	+		IAI47_16425	0.39	+0.4
3,478,620	-		IAI47_16425	0.39	-0.1
3,478,620	-		IAI47_16425	0.39	-0.2
3,478,620	-		IAI47_16425	0.39	-0.1
3,478,917	+		IAI47_16425	0.60	-0.8
3,478,973	+		IAI47_16425	0.64	-1.6
3,478,973	+		IAI47_16425	0.64	-0.4
3,478,974	-		IAI47_16425	0.65	-0.1
3,478,974	-		IAI47_16425	0.65	+0.8