Strain Fitness in Pantoea sp. MT58 around IAI47_16205

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
3,430,943	+				+1.2
3,430,943	+				+0.2
3,430,944	-				+1.5
3,430,944	-				-1.4
3,430,944	-				+0.7
3,430,995	+				-1.0
3,431,014	+				+0.8
3,431,015	-				+2.4
3,431,015	-				+0.8
3,431,015	-				-0.6
3,431,042	+				+2.2
3,431,042	+				-0.8
3,431,042	+				-0.2
3,431,042	+				+2.2
3,431,042	+				-1.2
3,431,042	+				-0.1
3,431,042	+				-0.0
3,431,043	-				-0.1
3,431,043	-				-0.6
3,431,066	+				+0.0
3,431,066	+				-2.4
3,431,079	+				+1.3
3,431,079	+				-0.6
3,431,079	+				+1.0
3,431,079	+				-0.2
3,431,079	+				-0.1
3,431,080	-				-2.5
3,431,080	-				-0.2
3,431,189	-		IAI47_16200	0.19	+2.5
3,431,234	+		IAI47_16200	0.25	+0.2
3,431,234	+		IAI47_16200	0.25	-0.0
3,431,235	-		IAI47_16200	0.25	-0.6
3,431,280	-		IAI47_16200	0.31	+1.0
3,431,291	+		IAI47_16200	0.32	+0.8
3,431,291	+		IAI47_16200	0.32	+0.6
3,431,291	+		IAI47_16200	0.32	-2.1
3,431,292	-		IAI47_16200	0.32	-0.0
3,431,304	+		IAI47_16200	0.34	-0.4
3,431,304	+		IAI47_16200	0.34	+1.2
3,431,304	+		IAI47_16200	0.34	-0.3
3,431,304	+		IAI47_16200	0.34	-0.2
3,431,304	+		IAI47_16200	0.34	+0.2
3,431,304	+		IAI47_16200	0.34	-0.1
3,431,304	+		IAI47_16200	0.34	-0.4
3,431,304	+		IAI47_16200	0.34	+0.4
3,431,304	+		IAI47_16200	0.34	+1.2
3,431,304	+		IAI47_16200	0.34	-2.1
3,431,304	+		IAI47_16200	0.34	-1.5
3,431,305	-		IAI47_16200	0.34	-0.5
3,431,305	-		IAI47_16200	0.34	-1.4
3,431,305	-		IAI47_16200	0.34	+0.7
3,431,305	-		IAI47_16200	0.34	-0.8
3,431,305	-		IAI47_16200	0.34	+2.0
3,431,305	-		IAI47_16200	0.34	-0.2
3,431,305	-		IAI47_16200	0.34	-0.6
3,431,305	-		IAI47_16200	0.34	+0.2
3,431,385	+		IAI47_16200	0.44	-0.7
3,431,385	+		IAI47_16200	0.44	-0.4
3,431,385	+		IAI47_16200	0.44	-1.0
3,431,385	+		IAI47_16200	0.44	-0.8
3,431,386	-		IAI47_16200	0.44	+1.5
3,431,463	-		IAI47_16200	0.54	-0.3
3,431,472	+		IAI47_16200	0.55	+1.4
3,431,473	-		IAI47_16200	0.56	-1.0
3,431,473	-		IAI47_16200	0.56	+1.2
3,431,473	-		IAI47_16200	0.56	-0.8
3,431,473	-		IAI47_16200	0.56	-0.7
3,431,565	+		IAI47_16200	0.67	-0.2
3,431,609	+		IAI47_16200	0.73	-0.5
3,431,609	+		IAI47_16200	0.73	-0.6
3,431,609	+		IAI47_16200	0.73	+1.5
3,431,610	-		IAI47_16200	0.73	-0.6
3,431,643	+		IAI47_16200	0.78	-0.6
3,431,643	+		IAI47_16200	0.78	-0.6
3,431,643	+		IAI47_16200	0.78	-0.6
3,431,643	+		IAI47_16200	0.78	-1.3
3,431,644	-		IAI47_16200	0.78	+1.2
3,431,644	-		IAI47_16200	0.78	+0.2
3,431,644	-		IAI47_16200	0.78	-0.2
3,431,644	-		IAI47_16200	0.78	+0.6
3,431,645	+		IAI47_16200	0.78	+1.2
3,431,645	+		IAI47_16200	0.78	-0.6
3,431,645	+		IAI47_16200	0.78	+0.5
3,431,646	-		IAI47_16200	0.78	+1.9
3,431,646	-		IAI47_16200	0.78	+1.8
3,431,646	-		IAI47_16200	0.78	-0.2
3,431,646	-		IAI47_16200	0.78	+0.8
3,431,646	-		IAI47_16200	0.78	-1.7
3,431,654	+		IAI47_16200	0.79	+3.2
3,431,655	-		IAI47_16200	0.79	+0.2
3,431,661	+		IAI47_16200	0.80	+0.0
3,431,661	+		IAI47_16200	0.80	+2.2
3,431,662	-		IAI47_16200	0.80	+0.8
3,431,662	-		IAI47_16200	0.80	-0.2
3,431,662	-		IAI47_16200	0.80	+0.9
3,431,694	+		IAI47_16200	0.84	-0.1
3,431,694	+		IAI47_16200	0.84	-0.8
3,431,694	+		IAI47_16200	0.84	-1.7
3,431,694	+		IAI47_16200	0.84	-0.1
3,431,695	-		IAI47_16200	0.84	-0.0
3,431,695	-		IAI47_16200	0.84	+1.2
3,431,732	+		IAI47_16200	0.89	-1.0
3,431,732	+		IAI47_16200	0.89	-0.6
3,431,732	+		IAI47_16200	0.89	-0.8
3,431,732	+		IAI47_16200	0.89	-0.1
3,431,732	+		IAI47_16200	0.89	+0.1
3,431,733	-		IAI47_16200	0.89	-0.9
3,431,733	-		IAI47_16200	0.89	+0.0
3,431,733	-		IAI47_16200	0.89	-1.8
3,431,754	+				+1.2
3,431,755	-				+0.4
3,431,798	+				-0.5
3,431,815	-				-1.0
3,431,833	+				-0.1
3,431,834	-				+2.3
3,431,834	-				-1.3
3,431,849	+				-0.0
3,431,849	+				+1.5
3,431,849	+				+0.5
3,431,849	+				-0.4
3,431,849	+				-0.8
3,431,849	+				-0.4
3,431,849	+				-0.7
3,431,850	-				+1.2
3,431,850	-				-0.3
3,431,850	-				-0.5
3,431,850	-				+1.8
3,431,850	-				-0.5
3,431,858	+				+1.2
3,431,858	+				+2.5
3,431,859	-				+0.2
3,431,859	-				-0.5
3,431,873	+				+2.2
3,431,898	+				+0.2
3,431,898	+				+0.2
3,431,898	+				+1.0
3,431,899	-				+1.8
3,431,899	-				-0.3
3,431,899	-				+1.0
3,431,899	-				+0.3
3,431,979	-				-1.1
3,432,070	-		IAI47_16205	0.13	-0.4
3,432,135	+		IAI47_16205	0.19	-2.3
3,432,135	+		IAI47_16205	0.19	-0.8
3,432,136	-		IAI47_16205	0.19	-2.4
3,432,259	+		IAI47_16205	0.28	-2.4
3,432,260	-		IAI47_16205	0.28	+0.4
3,432,260	-		IAI47_16205	0.28	+0.2
3,432,260	-		IAI47_16205	0.28	-2.0
3,432,292	+		IAI47_16205	0.31	-0.7
3,432,293	-		IAI47_16205	0.31	-0.8
3,432,293	-		IAI47_16205	0.31	-1.5
3,432,293	-		IAI47_16205	0.31	+0.2
3,432,293	-		IAI47_16205	0.31	+1.2
3,432,293	-		IAI47_16205	0.31	+0.2
3,432,307	+		IAI47_16205	0.32	-0.4
3,432,308	-		IAI47_16205	0.32	-2.0
3,432,346	+		IAI47_16205	0.35	-2.0
3,432,353	-		IAI47_16205	0.36	+0.9
3,432,501	+		IAI47_16205	0.47	-0.8
3,432,501	+		IAI47_16205	0.47	-0.8
3,432,502	-		IAI47_16205	0.47	-1.1
3,432,502	-		IAI47_16205	0.47	+0.2
3,432,502	-		IAI47_16205	0.47	-1.4
3,432,504	+		IAI47_16205	0.47	+2.5
3,432,665	-		IAI47_16205	0.60	-1.7
3,432,741	+		IAI47_16205	0.66	-1.2
3,432,741	+		IAI47_16205	0.66	-1.8
3,432,742	-		IAI47_16205	0.66	+1.2
3,432,822	+		IAI47_16205	0.72	-1.6
3,432,822	+		IAI47_16205	0.72	-0.6
3,432,822	+		IAI47_16205	0.72	-1.2
3,432,823	-		IAI47_16205	0.72	-1.3
3,432,823	-		IAI47_16205	0.72	-0.3
3,432,823	-		IAI47_16205	0.72	-1.3
3,432,841	+		IAI47_16205	0.74	-1.8
3,432,841	+		IAI47_16205	0.74	-1.0
3,432,842	-		IAI47_16205	0.74	-0.7
3,432,862	+		IAI47_16205	0.75	-2.6
3,432,863	-		IAI47_16205	0.75	-1.7
3,432,952	+		IAI47_16205	0.82	+0.8
3,433,162	+				-2.0
3,433,163	-				-0.3
3,433,170	+				-1.6
3,433,170	+				-0.1
3,433,170	+				-1.2
3,433,170	+				+0.2
3,433,170	+				-0.5
3,433,171	-				-0.6
3,433,225	+				-1.1
3,433,225	+				-0.3
3,433,225	+				+1.8
3,433,225	+				-0.5
3,433,226	-				-0.1
3,433,226	-				-0.3
3,433,226	-				-0.6
3,433,254	+				-1.8
3,433,254	+				+0.2
3,433,255	-				-1.6
3,433,255	-				-0.3
3,433,255	-				+0.4
3,433,255	-				+0.2
3,433,255	-				-1.0
3,433,255	-				+0.2
3,433,339	+		IAI47_16210	0.17	+0.5
3,433,414	-		IAI47_16210	0.25	-0.8
3,433,468	+		IAI47_16210	0.31	-1.3
3,433,468	+		IAI47_16210	0.31	-1.1
3,433,468	+		IAI47_16210	0.31	-0.1
3,433,469	-		IAI47_16210	0.31	+2.5
3,433,469	-		IAI47_16210	0.31	-1.3
3,433,469	-		IAI47_16210	0.31	+0.0
3,433,469	-		IAI47_16210	0.31	-0.6
3,433,513	+		IAI47_16210	0.35	-0.5
3,433,514	-		IAI47_16210	0.35	-0.7
3,433,514	-		IAI47_16210	0.35	-0.7
3,433,514	-		IAI47_16210	0.35	-0.3
3,433,514	-		IAI47_16210	0.35	+0.7
3,433,514	-		IAI47_16210	0.35	-0.1
3,433,514	-		IAI47_16210	0.35	-1.1
3,433,530	+		IAI47_16210	0.37	-1.4
3,433,546	+		IAI47_16210	0.39	-0.9
3,433,585	-		IAI47_16210	0.43	+1.0
3,433,690	+		IAI47_16210	0.54	-0.0
3,433,690	+		IAI47_16210	0.54	+1.3
3,433,690	+		IAI47_16210	0.54	-0.8
3,433,690	+		IAI47_16210	0.54	-0.8
3,433,690	+		IAI47_16210	0.54	-0.1
3,433,691	-		IAI47_16210	0.55	+0.8
3,433,691	-		IAI47_16210	0.55	+0.7
3,433,691	-		IAI47_16210	0.55	-0.6
3,433,695	+		IAI47_16210	0.55	-1.3
3,433,695	+		IAI47_16210	0.55	-0.7
3,433,696	-		IAI47_16210	0.55	+0.2
3,433,696	-		IAI47_16210	0.55	-0.9
3,433,696	-		IAI47_16210	0.55	-1.6
3,433,696	-		IAI47_16210	0.55	+0.3
3,433,806	-		IAI47_16210	0.67	-0.7
3,433,806	-		IAI47_16210	0.67	-1.0
3,433,846	+		IAI47_16210	0.71	+1.0
3,433,846	+		IAI47_16210	0.71	+0.5
3,433,846	+		IAI47_16210	0.71	+0.4
3,433,846	+		IAI47_16210	0.71	-0.4
3,433,846	+		IAI47_16210	0.71	-0.4
3,433,847	-		IAI47_16210	0.71	-0.1
3,433,847	-		IAI47_16210	0.71	-0.2
3,433,847	-		IAI47_16210	0.71	-0.6
3,433,847	-		IAI47_16210	0.71	-0.4
3,433,847	-		IAI47_16210	0.71	+2.9
3,433,847	-		IAI47_16210	0.71	-0.1
3,433,917	+		IAI47_16210	0.79	-0.2
3,433,917	+		IAI47_16210	0.79	-0.2
3,433,917	+		IAI47_16210	0.79	-1.8
3,433,917	+		IAI47_16210	0.79	-0.8
3,433,917	+		IAI47_16210	0.79	-1.1
3,433,918	-		IAI47_16210	0.79	+0.4
3,433,918	-		IAI47_16210	0.79	-3.5
3,433,918	-		IAI47_16210	0.79	-0.0
3,433,924	+		IAI47_16210	0.80	+0.2
3,433,924	+		IAI47_16210	0.80	-1.4
3,433,924	+		IAI47_16210	0.80	-1.1
3,433,924	+		IAI47_16210	0.80	-0.1
3,433,924	+		IAI47_16210	0.80	+0.4
3,433,925	-		IAI47_16210	0.80	+0.7
3,433,925	-		IAI47_16210	0.80	+0.5
3,433,925	-		IAI47_16210	0.80	-0.8
3,434,117	+				-1.4
3,434,117	+				-0.0
3,434,117	+				+0.5
3,434,118	-				-0.1
3,434,118	-				-0.1
3,434,118	-				-1.8
3,434,118	-				+0.0
3,434,118	-				-0.0
3,434,118	-				+1.4
3,434,118	-				-0.4
3,434,142	+				-0.9
3,434,143	-				-0.4
3,434,143	-				-0.0
3,434,143	-				+0.6