Strain Fitness in Pantoea sp. MT58 around IAI47_15830

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
3,341,321	+		IAI47_15825	0.29	-0.6
3,341,321	+		IAI47_15825	0.29	+0.2
3,341,321	+		IAI47_15825	0.29	+0.2
3,341,321	+		IAI47_15825	0.29	-0.1
3,341,322	-		IAI47_15825	0.29	-0.6
3,341,322	-		IAI47_15825	0.29	-0.1
3,341,358	+		IAI47_15825	0.32	+0.6
3,341,378	+		IAI47_15825	0.33	-0.6
3,341,392	+		IAI47_15825	0.34	-0.0
3,341,392	+		IAI47_15825	0.34	-0.9
3,341,392	+		IAI47_15825	0.34	+1.2
3,341,393	-		IAI47_15825	0.34	-2.4
3,341,393	-		IAI47_15825	0.34	-0.9
3,341,441	+		IAI47_15825	0.38	-0.6
3,341,441	+		IAI47_15825	0.38	+0.0
3,341,531	+		IAI47_15825	0.44	+0.3
3,341,532	-		IAI47_15825	0.44	-0.7
3,341,630	+		IAI47_15825	0.51	+1.5
3,341,631	-		IAI47_15825	0.51	-0.3
3,341,631	-		IAI47_15825	0.51	+0.8
3,341,670	+		IAI47_15825	0.54	-0.5
3,341,670	+		IAI47_15825	0.54	-1.4
3,341,670	+		IAI47_15825	0.54	-0.6
3,341,670	+		IAI47_15825	0.54	-0.1
3,341,670	+		IAI47_15825	0.54	+0.8
3,341,670	+		IAI47_15825	0.54	-1.2
3,341,670	+		IAI47_15825	0.54	+0.9
3,341,670	+		IAI47_15825	0.54	+0.8
3,341,670	+		IAI47_15825	0.54	+0.7
3,341,670	+		IAI47_15825	0.54	+0.8
3,341,670	+		IAI47_15825	0.54	+0.7
3,341,670	+		IAI47_15825	0.54	+0.2
3,341,670	+		IAI47_15825	0.54	+0.2
3,341,670	+		IAI47_15825	0.54	+0.2
3,341,671	-		IAI47_15825	0.54	+2.0
3,341,671	-		IAI47_15825	0.54	+0.2
3,341,671	-		IAI47_15825	0.54	-0.2
3,341,671	-		IAI47_15825	0.54	+0.1
3,341,671	-		IAI47_15825	0.54	-0.2
3,341,671	-		IAI47_15825	0.54	-0.8
3,341,671	-		IAI47_15825	0.54	-0.8
3,341,671	-		IAI47_15825	0.54	-0.7
3,341,671	-		IAI47_15825	0.54	+0.4
3,341,671	-		IAI47_15825	0.54	+0.0
3,341,671	-		IAI47_15825	0.54	+0.4
3,341,671	-		IAI47_15825	0.54	+1.0
3,341,671	-		IAI47_15825	0.54	-0.3
3,341,671	-		IAI47_15825	0.54	-0.4
3,341,671	-		IAI47_15825	0.54	-0.3
3,341,673	+		IAI47_15825	0.54	-0.0
3,341,673	+		IAI47_15825	0.54	-0.4
3,341,673	+		IAI47_15825	0.54	-0.3
3,341,673	+		IAI47_15825	0.54	-1.0
3,341,673	+		IAI47_15825	0.54	-1.8
3,341,673	+		IAI47_15825	0.54	+0.2
3,341,673	+		IAI47_15825	0.54	+1.0
3,341,674	-		IAI47_15825	0.54	+0.2
3,341,674	-		IAI47_15825	0.54	+1.6
3,341,674	-		IAI47_15825	0.54	+0.2
3,341,674	-		IAI47_15825	0.54	-0.4
3,341,674	-		IAI47_15825	0.54	-0.1
3,341,674	-		IAI47_15825	0.54	-1.0
3,341,674	-		IAI47_15825	0.54	+2.8
3,341,721	-		IAI47_15825	0.57	+0.2
3,341,813	+		IAI47_15825	0.64	+0.1
3,341,813	+		IAI47_15825	0.64	+0.4
3,341,814	-		IAI47_15825	0.64	-0.4
3,341,814	-		IAI47_15825	0.64	-1.1
3,341,814	-		IAI47_15825	0.64	-0.9
3,341,814	-		IAI47_15825	0.64	-0.1
3,341,814	-		IAI47_15825	0.64	-0.7
3,341,814	-		IAI47_15825	0.64	-0.4
3,341,816	+		IAI47_15825	0.64	-1.6
3,341,817	-		IAI47_15825	0.64	+0.5
3,341,817	-		IAI47_15825	0.64	-1.4
3,341,847	+		IAI47_15825	0.66	+0.4
3,341,848	-		IAI47_15825	0.66	+0.2
3,341,848	-		IAI47_15825	0.66	-0.8
3,341,881	+		IAI47_15825	0.69	+0.3
3,341,881	+		IAI47_15825	0.69	+1.2
3,341,881	+		IAI47_15825	0.69	-0.3
3,341,882	-		IAI47_15825	0.69	+1.9
3,341,882	-		IAI47_15825	0.69	-0.4
3,341,889	+		IAI47_15825	0.69	-0.4
3,341,889	+		IAI47_15825	0.69	+2.2
3,341,889	+		IAI47_15825	0.69	+0.9
3,341,890	-		IAI47_15825	0.69	+0.1
3,341,890	-		IAI47_15825	0.69	+0.2
3,341,890	-		IAI47_15825	0.69	-0.6
3,341,903	+		IAI47_15825	0.70	-1.0
3,341,903	+		IAI47_15825	0.70	+1.2
3,341,904	-		IAI47_15825	0.70	-0.3
3,341,961	+		IAI47_15825	0.74	+0.5
3,341,961	+		IAI47_15825	0.74	-0.2
3,342,078	+		IAI47_15825	0.83	+1.2
3,342,078	+		IAI47_15825	0.83	-0.9
3,342,078	+		IAI47_15825	0.83	+1.4
3,342,079	-		IAI47_15825	0.83	+1.3
3,342,079	-		IAI47_15825	0.83	+0.6
3,342,079	-		IAI47_15825	0.83	-0.5
3,342,079	-		IAI47_15825	0.83	+0.4
3,342,079	-		IAI47_15825	0.83	+0.2
3,342,079	-		IAI47_15825	0.83	+1.8
3,342,079	-		IAI47_15825	0.83	+1.4
3,342,084	+		IAI47_15825	0.83	-0.2
3,342,084	+		IAI47_15825	0.83	+2.8
3,342,084	+		IAI47_15825	0.83	+1.6
3,342,085	-		IAI47_15825	0.83	+0.4
3,342,085	-		IAI47_15825	0.83	-1.3
3,342,085	-		IAI47_15825	0.83	-0.8
3,342,099	-		IAI47_15825	0.84	+1.8
3,342,099	-		IAI47_15825	0.84	-1.1
3,342,165	+		IAI47_15825	0.89	+0.5
3,342,221	+				-1.1
3,342,221	+				+0.6
3,342,221	+				+0.0
3,342,222	-				-0.2
3,342,222	-				-0.4
3,342,268	+				+1.3
3,342,268	+				+1.8
3,342,268	+				+0.5
3,342,269	-				-0.8
3,342,269	-				+0.3
3,342,299	+				-1.0
3,342,299	+				-1.4
3,342,300	-				+0.2
3,342,300	-				-0.0
3,342,317	+				-0.3
3,342,317	+				-0.8
3,342,317	+				-0.8
3,342,317	+				-1.2
3,342,318	-				+0.6
3,342,318	-				-1.6
3,342,318	-				-1.8
3,342,318	-				-0.6
3,342,318	-				-0.4
3,342,346	+				+1.6
3,342,346	+				+0.2
3,342,346	+				-0.9
3,342,347	-				-0.2
3,342,392	+				-0.3
3,342,392	+				+0.1
3,342,392	+				-0.2
3,342,392	+				+0.2
3,342,393	-				+0.2
3,342,393	-				-0.4
3,342,393	-				-0.2
3,342,393	-				+0.8
3,342,393	-				-2.6
3,342,395	+				+0.2
3,342,395	+				-1.1
3,342,396	-				-0.7
3,342,396	-				+0.8
3,342,396	-				-0.6
3,342,396	-				+1.2
3,342,396	-				+1.0
3,342,396	-				+0.3
3,342,396	-				-0.1
3,342,396	-				+1.6
3,342,396	-				+0.7
3,342,419	+		IAI47_15830	0.10	+1.9
3,342,515	-		IAI47_15830	0.20	+0.4
3,342,545	+		IAI47_15830	0.23	+0.5
3,342,545	+		IAI47_15830	0.23	+0.0
3,342,545	+		IAI47_15830	0.23	+0.0
3,342,545	+		IAI47_15830	0.23	-1.8
3,342,545	+		IAI47_15830	0.23	-0.3
3,342,545	+		IAI47_15830	0.23	+0.2
3,342,546	-		IAI47_15830	0.24	+0.2
3,342,546	-		IAI47_15830	0.24	-0.3
3,342,546	-		IAI47_15830	0.24	+0.2
3,342,546	-		IAI47_15830	0.24	+0.8
3,342,546	-		IAI47_15830	0.24	+0.7
3,342,565	+		IAI47_15830	0.26	+1.2
3,342,565	+		IAI47_15830	0.26	-0.4
3,342,566	-		IAI47_15830	0.26	+1.0
3,342,566	-		IAI47_15830	0.26	+1.5
3,342,566	-		IAI47_15830	0.26	+0.2
3,342,569	+		IAI47_15830	0.26	+0.0
3,342,569	+		IAI47_15830	0.26	-0.8
3,342,569	+		IAI47_15830	0.26	+0.5
3,342,569	+		IAI47_15830	0.26	+1.8
3,342,570	-		IAI47_15830	0.26	+0.4
3,342,570	-		IAI47_15830	0.26	+2.0
3,342,570	-		IAI47_15830	0.26	+0.0
3,342,570	-		IAI47_15830	0.26	+1.1
3,342,626	+		IAI47_15830	0.32	+3.0
3,342,626	+		IAI47_15830	0.32	+0.4
3,342,626	+		IAI47_15830	0.32	-0.2
3,342,626	+		IAI47_15830	0.32	+0.2
3,342,627	-		IAI47_15830	0.32	-0.0
3,342,627	-		IAI47_15830	0.32	+0.2
3,342,732	+		IAI47_15830	0.43	+0.4
3,342,732	+		IAI47_15830	0.43	-0.8
3,342,732	+		IAI47_15830	0.43	+1.5
3,342,732	+		IAI47_15830	0.43	+1.0
3,342,733	-		IAI47_15830	0.43	+1.2
3,342,733	-		IAI47_15830	0.43	+0.5
3,342,752	+		IAI47_15830	0.45	+2.2
3,342,752	+		IAI47_15830	0.45	-0.8
3,342,753	-		IAI47_15830	0.45	-0.4
3,342,753	-		IAI47_15830	0.45	+0.7
3,342,793	+		IAI47_15830	0.49	-0.4
3,342,794	-		IAI47_15830	0.49	-0.3
3,342,794	-		IAI47_15830	0.49	+0.1
3,342,794	-		IAI47_15830	0.49	+0.9
3,342,794	-		IAI47_15830	0.49	+1.7
3,342,794	-		IAI47_15830	0.49	+1.6
3,342,800	+		IAI47_15830	0.50	-0.1
3,342,800	+		IAI47_15830	0.50	-0.1
3,342,801	-		IAI47_15830	0.50	+2.0
3,342,801	-		IAI47_15830	0.50	-0.0
3,342,801	-		IAI47_15830	0.50	+1.0
3,342,801	-		IAI47_15830	0.50	+2.2
3,342,838	+		IAI47_15830	0.54	-0.7
3,342,838	+		IAI47_15830	0.54	-0.1
3,342,839	-		IAI47_15830	0.54	+0.9
3,342,866	+		IAI47_15830	0.57	-1.1
3,342,867	-		IAI47_15830	0.57	-0.4
3,342,944	+		IAI47_15830	0.65	-0.2
3,342,944	+		IAI47_15830	0.65	+1.2
3,342,945	-		IAI47_15830	0.65	+0.6
3,342,971	+		IAI47_15830	0.68	-0.6
3,342,971	+		IAI47_15830	0.68	+0.3
3,342,972	-		IAI47_15830	0.68	+0.0
3,342,985	-		IAI47_15830	0.69	+0.4
3,343,056	+		IAI47_15830	0.77	+0.9
3,343,056	+		IAI47_15830	0.77	-0.5
3,343,057	-		IAI47_15830	0.77	+0.5
3,343,057	-		IAI47_15830	0.77	-0.2
3,343,057	-		IAI47_15830	0.77	-0.1
3,343,057	-		IAI47_15830	0.77	+0.5
3,343,079	+		IAI47_15830	0.79	+0.2
3,343,079	+		IAI47_15830	0.79	+1.0
3,343,079	+		IAI47_15830	0.79	-0.5
3,343,079	+		IAI47_15830	0.79	+0.2
3,343,079	+		IAI47_15830	0.79	-0.4
3,343,080	-		IAI47_15830	0.79	-0.1
3,343,102	+		IAI47_15830	0.81	+0.4
3,343,137	-		IAI47_15830	0.85	+1.5
3,343,147	+		IAI47_15830	0.86	+1.3
3,343,151	+		IAI47_15830	0.87	+1.2
3,343,151	+		IAI47_15830	0.87	+0.5
3,343,152	-		IAI47_15830	0.87	-0.6
3,343,152	-		IAI47_15830	0.87	+0.2
3,343,152	-		IAI47_15830	0.87	-0.3
3,343,262	+				-0.2
3,343,262	+				-0.1
3,343,262	+				-1.2
3,343,263	-				+2.0
3,343,358	-		IAI47_15835	0.11	-0.0
3,343,358	-		IAI47_15835	0.11	-0.2
3,343,362	+		IAI47_15835	0.12	-1.3
3,343,362	+		IAI47_15835	0.12	-0.2
3,343,418	+		IAI47_15835	0.18	+1.6
3,343,419	-		IAI47_15835	0.18	+0.5
3,343,419	-		IAI47_15835	0.18	-0.1
3,343,494	-		IAI47_15835	0.27	-1.4
3,343,494	-		IAI47_15835	0.27	-0.5
3,343,578	+		IAI47_15835	0.37	+0.2
3,343,578	+		IAI47_15835	0.37	+0.0
3,343,578	+		IAI47_15835	0.37	-0.4
3,343,578	+		IAI47_15835	0.37	+0.2
3,343,578	+		IAI47_15835	0.37	-1.8
3,343,578	+		IAI47_15835	0.37	-0.0
3,343,579	-		IAI47_15835	0.37	+1.0
3,343,684	+		IAI47_15835	0.49	-0.2
3,343,685	+		IAI47_15835	0.50	-0.7
3,343,685	+		IAI47_15835	0.50	+2.5
3,343,685	+		IAI47_15835	0.50	-0.1
3,343,685	+		IAI47_15835	0.50	-0.6
3,343,685	+		IAI47_15835	0.50	-0.6
3,343,686	-		IAI47_15835	0.50	-1.2
3,343,686	-		IAI47_15835	0.50	-0.7
3,343,686	-		IAI47_15835	0.50	-0.4
3,343,753	+		IAI47_15835	0.58	-1.5
3,343,835	+		IAI47_15835	0.67	+0.2
3,343,835	+		IAI47_15835	0.67	+0.4
3,343,835	+		IAI47_15835	0.67	+0.0
3,343,835	+		IAI47_15835	0.67	+0.7
3,343,835	+		IAI47_15835	0.67	+0.7
3,343,835	+		IAI47_15835	0.67	-0.4
3,343,835	+		IAI47_15835	0.67	-0.2
3,343,835	+		IAI47_15835	0.67	+1.5
3,343,835	+		IAI47_15835	0.67	-1.2
3,343,835	+		IAI47_15835	0.67	+1.0
3,343,836	-		IAI47_15835	0.67	+0.5
3,343,836	-		IAI47_15835	0.67	-0.4
3,343,836	-		IAI47_15835	0.67	-0.2
3,343,836	-		IAI47_15835	0.67	-1.4
3,343,839	+		IAI47_15835	0.68	-0.4
3,343,839	+		IAI47_15835	0.68	-2.1
3,343,839	+		IAI47_15835	0.68	-1.8
3,343,839	+		IAI47_15835	0.68	+0.0
3,343,839	+		IAI47_15835	0.68	+0.4
3,343,839	+		IAI47_15835	0.68	+0.1
3,343,839	+		IAI47_15835	0.68	+1.8
3,343,839	+		IAI47_15835	0.68	+0.6
3,343,839	+		IAI47_15835	0.68	-1.1
3,343,839	+		IAI47_15835	0.68	-0.7
3,343,839	+		IAI47_15835	0.68	-0.4
3,343,839	+		IAI47_15835	0.68	+2.5
3,343,839	+		IAI47_15835	0.68	-1.4
3,343,839	+		IAI47_15835	0.68	+0.5
3,343,839	+		IAI47_15835	0.68	+0.2
3,343,839	+		IAI47_15835	0.68	-0.4
3,343,839	+		IAI47_15835	0.68	+0.2
3,343,839	+		IAI47_15835	0.68	-0.1
3,343,839	+		IAI47_15835	0.68	+0.6
3,343,839	+		IAI47_15835	0.68	-1.3
3,343,839	+		IAI47_15835	0.68	-0.8
3,343,839	+		IAI47_15835	0.68	+1.2
3,343,839	+		IAI47_15835	0.68	+0.2
3,343,839	+		IAI47_15835	0.68	+0.9
3,343,840	-		IAI47_15835	0.68	-0.1
3,343,840	-		IAI47_15835	0.68	-0.1
3,343,840	-		IAI47_15835	0.68	-0.1
3,343,840	-		IAI47_15835	0.68	-0.4
3,343,840	-		IAI47_15835	0.68	-0.5
3,343,840	-		IAI47_15835	0.68	-0.3
3,343,840	-		IAI47_15835	0.68	-1.4
3,343,840	-		IAI47_15835	0.68	-0.2
3,343,840	-		IAI47_15835	0.68	-1.2
3,343,840	-		IAI47_15835	0.68	-1.1
3,343,840	-		IAI47_15835	0.68	+2.0
3,343,840	-		IAI47_15835	0.68	-0.7
3,343,840	-		IAI47_15835	0.68	-0.1
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