Strain Fitness in Pantoea sp. MT58 around IAI47_15815

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
3,337,276	-		IAI47_15810	0.73	-0.8
3,337,317	-		IAI47_15810	0.75	-2.1
3,337,414	+		IAI47_15810	0.78	-2.1
3,337,892	+				-0.8
3,337,893	-				-2.1
3,337,982	-				+0.2
3,338,009	-				-2.1
3,338,009	-				-1.9
3,338,021	+				-1.8
3,338,022	-				+0.4
3,338,022	-				-0.8
3,338,031	-				-0.6
3,338,074	-				-0.6
3,338,074	-				-0.1
3,338,080	-				+0.6
3,338,106	-				+0.9
3,338,106	-				-1.9
3,338,106	-				+0.0
3,338,106	-				+0.3
3,338,106	-				-1.6
3,338,106	-				-0.8
3,338,106	-				-0.8
3,338,106	-				+0.2
3,338,116	-				-0.1
3,338,179	-		IAI47_15815	0.11	-1.0
3,338,179	-		IAI47_15815	0.11	+0.2
3,338,179	-		IAI47_15815	0.11	+0.1
3,338,297	-		IAI47_15815	0.26	-0.0
3,338,297	-		IAI47_15815	0.26	+1.7
3,338,336	+		IAI47_15815	0.31	+0.2
3,338,337	-		IAI47_15815	0.31	+0.9
3,338,337	-		IAI47_15815	0.31	-0.6
3,338,353	-		IAI47_15815	0.33	+1.0
3,338,353	-		IAI47_15815	0.33	-0.2
3,338,362	-		IAI47_15815	0.35	-1.1
3,338,375	+		IAI47_15815	0.36	-3.4
3,338,434	-		IAI47_15815	0.44	+0.2
3,338,522	-		IAI47_15815	0.56	-1.0
3,338,522	-		IAI47_15815	0.56	-1.2
3,338,524	+		IAI47_15815	0.56	-2.1
3,338,525	-		IAI47_15815	0.56	-0.5
3,338,525	-		IAI47_15815	0.56	+0.8
3,338,542	-		IAI47_15815	0.58	+0.8
3,338,617	-		IAI47_15815	0.68	-0.8
3,338,674	-		IAI47_15815	0.75	+1.4
3,338,674	-		IAI47_15815	0.75	+1.8
3,338,689	-		IAI47_15815	0.77	+0.2
3,338,793	-				+0.6
3,338,835	-				+1.0
3,338,835	-				-0.4
3,338,835	-				-0.6
3,338,835	-				-0.9
3,338,835	-				-1.0
3,338,835	-				+0.8
3,338,835	-				+1.2
3,338,835	-				+1.4
3,338,835	-				+1.2
3,338,835	-				-0.7
3,338,835	-				+0.2
3,338,835	-				-0.8
3,338,835	-				+0.1
3,338,835	-				-0.7
3,338,835	-				+0.8
3,338,835	-				+3.0
3,338,835	-				-0.1
3,338,835	-				-0.5
3,338,835	-				-0.1
3,338,850	-				+0.2
3,338,850	-				-0.2
3,338,850	-				+0.8
3,338,855	-				-0.7
3,338,855	-				-1.4
3,338,855	-				+0.2
3,338,855	-				+1.8
3,338,855	-				-1.0
3,338,872	+				-1.4
3,338,872	+				-2.4
3,338,873	-				-1.2
3,338,873	-				+0.9
3,338,873	-				+0.2
3,338,873	-				+0.8
3,338,875	+				-0.8
3,338,875	+				+0.2
3,338,876	-				+1.8
3,338,876	-				-1.4
3,338,876	-				+0.5
3,338,876	-				+1.2
3,338,876	-				-0.3
3,338,932	+				-1.8
3,338,933	-				+0.8
3,338,933	-				-1.5
3,338,933	-				-0.3
3,338,941	-				-0.4
3,338,941	-				-0.4
3,338,955	+				+0.5
3,338,955	+				-0.4
3,338,955	+				-1.0
3,338,955	+				-0.6
3,338,955	+				-1.0
3,338,955	+				+1.2
3,338,955	+				+0.9
3,338,955	+				-0.8
3,338,955	+				-0.2
3,338,955	+				+0.8
3,338,956	-				-0.2
3,338,956	-				-0.2
3,338,956	-				-0.3
3,338,956	-				+1.4
3,338,956	-				+2.8
3,338,956	-				-1.1
3,338,956	-				-0.8
3,338,957	+				-0.7
3,338,957	+				-0.8
3,338,957	+				-0.2
3,338,958	-				+0.0
3,338,958	-				+3.2
3,338,958	-				+2.5
3,338,958	-				+1.2
3,338,985	+				-0.2
3,339,051	+				-1.2
3,339,073	+				-0.3
3,339,074	-				-0.3
3,339,074	-				+0.8
3,339,074	-				+0.3
3,339,074	-				-0.1
3,339,074	-				+0.9
3,339,074	-				+1.0
3,339,074	-				-0.2
3,339,083	+				-0.7
3,339,108	+				-1.4
3,339,108	+				-1.1
3,339,108	+				-0.8
3,339,108	+				-0.5
3,339,108	+				-0.8
3,339,109	-				-1.4
3,339,109	-				-0.2
3,339,109	-				+1.0
3,339,109	-				-0.8
3,339,120	-				+2.0
3,339,120	-				+0.2
3,339,242	+				+0.5
3,339,243	-				-0.6
3,339,294	-				-0.9
3,339,375	+				-1.1
3,339,375	+				-2.3
3,339,375	+				+0.2
3,339,376	-				-0.9
3,339,376	-				+0.4
3,339,414	+				+0.4
3,339,414	+				-0.2
3,339,414	+				-1.4
3,339,415	-				-1.8
3,339,415	-				-0.7
3,339,415	-				+1.2
3,339,427	-				-0.7
3,339,427	-				-2.1
3,339,513	+		IAI47_15820	0.10	-1.4
3,339,523	+		IAI47_15820	0.11	-0.2
3,339,524	-		IAI47_15820	0.11	+0.0
3,339,567	-		IAI47_15820	0.14	-1.0
3,339,620	-		IAI47_15820	0.18	-0.8
3,339,620	-		IAI47_15820	0.18	+0.8
3,339,621	+		IAI47_15820	0.18	-0.7
3,339,622	-		IAI47_15820	0.18	+1.0
3,339,622	-		IAI47_15820	0.18	-0.1
3,339,625	+		IAI47_15820	0.18	-0.3
3,339,625	+		IAI47_15820	0.18	-0.1
3,339,625	+		IAI47_15820	0.18	+0.6
3,339,625	+		IAI47_15820	0.18	-2.1
3,339,625	+		IAI47_15820	0.18	-1.1
3,339,626	-		IAI47_15820	0.18	-1.6
3,339,626	-		IAI47_15820	0.18	-0.0
3,339,664	+		IAI47_15820	0.21	-1.4
3,339,664	+		IAI47_15820	0.21	-1.4
3,339,664	+		IAI47_15820	0.21	-1.0
3,339,676	+		IAI47_15820	0.22	-1.6
3,339,676	+		IAI47_15820	0.22	+0.5
3,339,676	+		IAI47_15820	0.22	-1.8
3,339,676	+		IAI47_15820	0.22	+0.5
3,339,676	+		IAI47_15820	0.22	-1.6
3,339,676	+		IAI47_15820	0.22	-1.4
3,339,676	+		IAI47_15820	0.22	-1.2
3,339,676	+		IAI47_15820	0.22	-2.0
3,339,676	+		IAI47_15820	0.22	-0.8
3,339,676	+		IAI47_15820	0.22	-2.4
3,339,676	+		IAI47_15820	0.22	+1.2
3,339,676	+		IAI47_15820	0.22	-0.8
3,339,677	-		IAI47_15820	0.22	+0.2
3,339,677	-		IAI47_15820	0.22	+0.2
3,339,677	-		IAI47_15820	0.22	+0.0
3,339,677	-		IAI47_15820	0.22	+0.2
3,339,677	-		IAI47_15820	0.22	+0.2
3,339,718	+		IAI47_15820	0.25	+0.2
3,339,718	+		IAI47_15820	0.25	-1.0
3,339,718	+		IAI47_15820	0.25	-0.7
3,339,718	+		IAI47_15820	0.25	-0.2
3,339,718	+		IAI47_15820	0.25	-0.8
3,339,718	+		IAI47_15820	0.25	-1.4
3,339,719	-		IAI47_15820	0.25	+0.2
3,339,719	-		IAI47_15820	0.25	-1.4
3,339,719	-		IAI47_15820	0.25	-0.2
3,339,789	+		IAI47_15820	0.30	-0.1
3,339,789	+		IAI47_15820	0.30	-0.5
3,339,789	+		IAI47_15820	0.30	-0.8
3,339,790	-		IAI47_15820	0.31	-0.5
3,339,846	+		IAI47_15820	0.35	+0.2
3,339,846	+		IAI47_15820	0.35	-0.7
3,339,847	-		IAI47_15820	0.35	-0.6
3,339,847	-		IAI47_15820	0.35	-0.4
3,339,847	-		IAI47_15820	0.35	-1.8
3,339,847	-		IAI47_15820	0.35	-1.2
3,339,847	-		IAI47_15820	0.35	+0.2