Strain Fitness in Pantoea sp. MT58 around IAI47_15120

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
3,186,651	+		IAI47_15115	0.23	-0.8
3,186,652	-		IAI47_15115	0.23	-1.4
3,186,657	+		IAI47_15115	0.24	-2.4
3,186,658	-		IAI47_15115	0.24	-2.8
3,186,658	-		IAI47_15115	0.24	-0.8
3,186,658	-		IAI47_15115	0.24	-1.4
3,186,686	+		IAI47_15115	0.26	-3.0
3,186,686	+		IAI47_15115	0.26	-2.1
3,186,686	+		IAI47_15115	0.26	-3.0
3,186,686	+		IAI47_15115	0.26	-2.4
3,186,686	+		IAI47_15115	0.26	-2.6
3,186,686	+		IAI47_15115	0.26	-0.8
3,186,687	-		IAI47_15115	0.26	-0.8
3,186,687	-		IAI47_15115	0.26	-0.8
3,186,687	-		IAI47_15115	0.26	-2.6
3,186,687	-		IAI47_15115	0.26	-2.6
3,186,687	-		IAI47_15115	0.26	-3.4
3,186,852	+		IAI47_15115	0.39	-2.1
3,186,853	-		IAI47_15115	0.39	-3.8
3,186,853	-		IAI47_15115	0.39	-3.0
3,186,853	-		IAI47_15115	0.39	-2.4
3,186,853	-		IAI47_15115	0.39	-3.6
3,186,929	+		IAI47_15115	0.46	-2.1
3,186,929	+		IAI47_15115	0.46	-2.1
3,186,929	+		IAI47_15115	0.46	-2.8
3,186,929	+		IAI47_15115	0.46	-1.4
3,186,930	-		IAI47_15115	0.46	-1.8
3,186,930	-		IAI47_15115	0.46	-2.6
3,186,930	-		IAI47_15115	0.46	-1.4
3,186,930	-		IAI47_15115	0.46	-3.6
3,186,930	-		IAI47_15115	0.46	-2.4
3,186,930	-		IAI47_15115	0.46	+0.2
3,186,934	-		IAI47_15115	0.46	-1.4
3,186,934	-		IAI47_15115	0.46	-1.4
3,186,934	-		IAI47_15115	0.46	-2.8
3,186,993	+		IAI47_15115	0.51	-2.1
3,186,993	+		IAI47_15115	0.51	-0.8
3,186,993	+		IAI47_15115	0.51	-2.8
3,186,994	-		IAI47_15115	0.51	-3.9
3,187,034	+		IAI47_15115	0.54	-2.1
3,187,102	+		IAI47_15115	0.59	-2.6
3,187,191	+		IAI47_15115	0.66	-0.8
3,187,243	-		IAI47_15115	0.71	-2.1
3,187,256	+		IAI47_15115	0.72	+0.2
3,187,256	+		IAI47_15115	0.72	-1.8
3,187,257	-		IAI47_15115	0.72	+0.2
3,187,257	-		IAI47_15115	0.72	-0.8
3,187,333	+		IAI47_15115	0.78	-2.1
3,187,333	+		IAI47_15115	0.78	-1.4
3,187,334	-		IAI47_15115	0.78	-2.1
3,187,334	-		IAI47_15115	0.78	-1.8
3,187,408	-		IAI47_15115	0.84	-1.8
3,187,423	+		IAI47_15115	0.85	-2.8
3,187,424	-		IAI47_15115	0.85	-2.1
3,187,424	-		IAI47_15115	0.85	+0.2
3,187,426	+		IAI47_15115	0.85	-1.8
3,187,462	+		IAI47_15115	0.88	-1.8
3,187,570	-				-2.3
3,187,571	+				-2.8
3,187,571	+				-3.3
3,187,571	+				+0.2
3,187,571	+				+0.2
3,187,572	-				-0.8
3,187,572	-				+0.2
3,187,623	+				+0.2
3,187,624	-				+0.2
3,187,666	-				-3.3
3,187,666	-				-2.4
3,187,671	+				-2.4
3,187,672	-				-0.8
3,187,672	-				+0.2
3,187,672	-				-1.8
3,187,861	+		IAI47_15120	0.22	-2.2
3,187,981	+		IAI47_15120	0.33	-1.8
3,187,982	-		IAI47_15120	0.33	-3.2
3,187,982	-		IAI47_15120	0.33	-1.4
3,188,077	+		IAI47_15120	0.41	-1.4
3,188,149	+		IAI47_15120	0.48	-0.8
3,188,149	+		IAI47_15120	0.48	-1.8
3,188,149	+		IAI47_15120	0.48	-2.4
3,188,149	+		IAI47_15120	0.48	-1.4
3,188,149	+		IAI47_15120	0.48	-1.8
3,188,150	-		IAI47_15120	0.48	-1.8
3,188,150	-		IAI47_15120	0.48	+0.2
3,188,150	-		IAI47_15120	0.48	-3.6
3,188,150	-		IAI47_15120	0.48	-3.0
3,188,150	-		IAI47_15120	0.48	-2.2
3,188,150	-		IAI47_15120	0.48	-2.4
3,188,150	-		IAI47_15120	0.48	-3.0
3,188,150	-		IAI47_15120	0.48	-2.2
3,188,150	-		IAI47_15120	0.48	+0.2
3,188,150	-		IAI47_15120	0.48	+0.2
3,188,341	+		IAI47_15120	0.65	-1.8
3,188,341	+		IAI47_15120	0.65	-2.2
3,188,341	+		IAI47_15120	0.65	-1.8
3,188,341	+		IAI47_15120	0.65	-2.8
3,188,341	+		IAI47_15120	0.65	+0.2
3,188,342	-		IAI47_15120	0.65	-2.4
3,188,342	-		IAI47_15120	0.65	-1.8
3,188,342	-		IAI47_15120	0.65	-2.6
3,188,434	+		IAI47_15120	0.74	-2.2
3,188,434	+		IAI47_15120	0.74	-1.4
3,188,434	+		IAI47_15120	0.74	-3.0
3,188,434	+		IAI47_15120	0.74	-0.8
3,188,441	-		IAI47_15120	0.74	-2.4
3,188,441	-		IAI47_15120	0.74	-2.4
3,188,441	-		IAI47_15120	0.74	-3.2
3,188,445	+		IAI47_15120	0.75	-0.8
3,188,445	+		IAI47_15120	0.75	-0.8
3,188,445	+		IAI47_15120	0.75	-1.8
3,188,445	+		IAI47_15120	0.75	+1.2
3,188,445	+		IAI47_15120	0.75	+0.2
3,188,446	-		IAI47_15120	0.75	-0.8
3,188,446	-		IAI47_15120	0.75	-0.8
3,188,449	+		IAI47_15120	0.75	-2.2
3,188,450	-		IAI47_15120	0.75	-2.2
3,188,456	+		IAI47_15120	0.76	-0.8
3,188,457	-		IAI47_15120	0.76	-3.0
3,188,457	-		IAI47_15120	0.76	-2.2
3,188,705	+				-2.4
3,188,706	-				-3.0
3,188,725	+				-1.4
3,188,725	+				-0.4
3,188,725	+				-0.8
3,188,726	-				-3.0
3,188,726	-				-3.0
3,188,726	-				-2.6
3,188,726	-				-2.8
3,188,833	+				-0.1
3,188,878	-				+0.7
3,188,878	-				-1.8
3,188,878	-				-0.5
3,188,899	+				+0.2
3,188,958	+				-0.1
3,188,958	+				-1.4
3,188,959	-				+0.6
3,189,036	+				-0.0
3,189,036	+				-1.8
3,189,037	-				+0.2
3,189,066	+				+0.8
3,189,090	+		IAI47_15125	0.11	-0.5
3,189,090	+		IAI47_15125	0.11	+0.2
3,189,090	+		IAI47_15125	0.11	+0.5
3,189,090	+		IAI47_15125	0.11	-0.9
3,189,091	-		IAI47_15125	0.11	+1.8
3,189,091	-		IAI47_15125	0.11	+0.6
3,189,091	-		IAI47_15125	0.11	-0.4
3,189,129	+		IAI47_15125	0.15	+1.2
3,189,129	+		IAI47_15125	0.15	-0.4
3,189,129	+		IAI47_15125	0.15	-0.2
3,189,129	+		IAI47_15125	0.15	+0.2
3,189,129	+		IAI47_15125	0.15	-0.0
3,189,129	+		IAI47_15125	0.15	-0.7
3,189,129	+		IAI47_15125	0.15	-0.2
3,189,130	-		IAI47_15125	0.15	+1.2
3,189,130	-		IAI47_15125	0.15	+1.4
3,189,130	-		IAI47_15125	0.15	-1.0
3,189,130	-		IAI47_15125	0.15	+0.4
3,189,130	-		IAI47_15125	0.15	+0.2
3,189,131	+		IAI47_15125	0.15	+0.3
3,189,137	+		IAI47_15125	0.16	-0.2
3,189,146	+		IAI47_15125	0.16	+0.4
3,189,165	-		IAI47_15125	0.18	-0.8
3,189,183	+		IAI47_15125	0.20	-0.8
3,189,184	-		IAI47_15125	0.20	+0.2
3,189,198	+		IAI47_15125	0.21	-0.8
3,189,198	+		IAI47_15125	0.21	-0.8
3,189,198	+		IAI47_15125	0.21	+0.3
3,189,199	-		IAI47_15125	0.21	+0.7
3,189,199	-		IAI47_15125	0.21	+0.2
3,189,199	-		IAI47_15125	0.21	+0.9
3,189,199	-		IAI47_15125	0.21	-1.2
3,189,199	-		IAI47_15125	0.21	+0.4
3,189,204	+		IAI47_15125	0.22	-1.4
3,189,204	+		IAI47_15125	0.22	-0.3
3,189,204	+		IAI47_15125	0.22	-0.2
3,189,204	+		IAI47_15125	0.22	+0.6
3,189,204	+		IAI47_15125	0.22	+0.6
3,189,205	-		IAI47_15125	0.22	+1.2
3,189,205	-		IAI47_15125	0.22	-0.4
3,189,205	-		IAI47_15125	0.22	-0.5
3,189,207	+		IAI47_15125	0.22	-2.4
3,189,212	+		IAI47_15125	0.22	-0.1
3,189,288	+		IAI47_15125	0.29	-0.8
3,189,299	-		IAI47_15125	0.30	-0.1
3,189,303	+		IAI47_15125	0.30	+0.2
3,189,303	+		IAI47_15125	0.30	-0.8
3,189,311	+		IAI47_15125	0.31	+0.5
3,189,311	+		IAI47_15125	0.31	-0.2
3,189,311	+		IAI47_15125	0.31	-0.6
3,189,312	-		IAI47_15125	0.31	-1.8
3,189,312	-		IAI47_15125	0.31	-0.9
3,189,312	-		IAI47_15125	0.31	+1.5
3,189,315	+		IAI47_15125	0.32	-0.1
3,189,315	+		IAI47_15125	0.32	+0.2
3,189,315	+		IAI47_15125	0.32	-0.6
3,189,315	+		IAI47_15125	0.32	+1.5
3,189,315	+		IAI47_15125	0.32	-0.8
3,189,315	+		IAI47_15125	0.32	+1.3
3,189,316	-		IAI47_15125	0.32	-0.3
3,189,316	-		IAI47_15125	0.32	+1.0
3,189,316	-		IAI47_15125	0.32	-0.6
3,189,316	-		IAI47_15125	0.32	-0.5
3,189,316	-		IAI47_15125	0.32	-0.8
3,189,327	+		IAI47_15125	0.33	-1.0
3,189,327	+		IAI47_15125	0.33	+0.5
3,189,327	+		IAI47_15125	0.33	+0.9
3,189,328	-		IAI47_15125	0.33	+0.4
3,189,328	-		IAI47_15125	0.33	+0.3
3,189,328	-		IAI47_15125	0.33	-0.6
3,189,352	+		IAI47_15125	0.35	-0.2
3,189,352	+		IAI47_15125	0.35	-0.3
3,189,352	+		IAI47_15125	0.35	-0.2
3,189,353	-		IAI47_15125	0.35	-0.2
3,189,353	-		IAI47_15125	0.35	+0.8
3,189,377	+		IAI47_15125	0.37	+0.8
3,189,378	-		IAI47_15125	0.37	-0.8
3,189,392	+		IAI47_15125	0.38	+0.8
3,189,392	+		IAI47_15125	0.38	-0.2
3,189,393	-		IAI47_15125	0.39	-0.2
3,189,398	+		IAI47_15125	0.39	-0.7
3,189,398	+		IAI47_15125	0.39	+1.2
3,189,398	+		IAI47_15125	0.39	-1.8
3,189,398	+		IAI47_15125	0.39	-1.0
3,189,399	-		IAI47_15125	0.39	+0.2
3,189,399	-		IAI47_15125	0.39	-0.2
3,189,399	-		IAI47_15125	0.39	+0.8
3,189,429	+		IAI47_15125	0.42	-0.3
3,189,429	+		IAI47_15125	0.42	-0.0
3,189,430	-		IAI47_15125	0.42	+0.3
3,189,430	-		IAI47_15125	0.42	+0.0
3,189,430	-		IAI47_15125	0.42	-1.4
3,189,430	-		IAI47_15125	0.42	+0.0
3,189,430	-		IAI47_15125	0.42	-1.3
3,189,434	+		IAI47_15125	0.42	-0.1
3,189,440	+		IAI47_15125	0.43	-0.2
3,189,440	+		IAI47_15125	0.43	-0.6
3,189,441	-		IAI47_15125	0.43	+1.2
3,189,441	-		IAI47_15125	0.43	-0.2
3,189,441	-		IAI47_15125	0.43	+0.6
3,189,441	-		IAI47_15125	0.43	+0.1
3,189,441	-		IAI47_15125	0.43	-2.0
3,189,441	-		IAI47_15125	0.43	-0.7
3,189,441	-		IAI47_15125	0.43	-0.3
3,189,483	+		IAI47_15125	0.47	+0.5
3,189,483	+		IAI47_15125	0.47	-1.0
3,189,484	-		IAI47_15125	0.47	-0.0
3,189,522	-		IAI47_15125	0.50	+1.0
3,189,522	-		IAI47_15125	0.50	+0.6
3,189,527	+		IAI47_15125	0.51	+0.1
3,189,527	+		IAI47_15125	0.51	-0.7
3,189,527	+		IAI47_15125	0.51	-0.4
3,189,527	+		IAI47_15125	0.51	-1.4
3,189,528	-		IAI47_15125	0.51	+0.2
3,189,528	-		IAI47_15125	0.51	+0.1
3,189,528	-		IAI47_15125	0.51	-0.4
3,189,528	-		IAI47_15125	0.51	-0.7
3,189,528	-		IAI47_15125	0.51	+0.2
3,189,528	-		IAI47_15125	0.51	-1.8
3,189,528	-		IAI47_15125	0.51	+0.2
3,189,530	+		IAI47_15125	0.51	+0.4
3,189,570	+		IAI47_15125	0.54	+0.3
3,189,571	-		IAI47_15125	0.55	+0.2
3,189,571	-		IAI47_15125	0.55	+0.0
3,189,652	-		IAI47_15125	0.62	-1.6
3,189,652	-		IAI47_15125	0.62	+1.2
3,189,696	+		IAI47_15125	0.66	+0.3
3,189,696	+		IAI47_15125	0.66	-1.6
3,189,696	+		IAI47_15125	0.66	-0.6
3,189,696	+		IAI47_15125	0.66	+1.4
3,189,696	+		IAI47_15125	0.66	-2.8
3,189,696	+		IAI47_15125	0.66	-0.4
3,189,696	+		IAI47_15125	0.66	-0.6
3,189,697	-		IAI47_15125	0.66	-0.8
3,189,697	-		IAI47_15125	0.66	-0.6
3,189,704	+		IAI47_15125	0.66	-3.2
3,189,704	+		IAI47_15125	0.66	+0.2
3,189,704	+		IAI47_15125	0.66	+0.2
3,189,704	+		IAI47_15125	0.66	+0.2
3,189,704	+		IAI47_15125	0.66	+0.6
3,189,704	+		IAI47_15125	0.66	-0.5
3,189,704	+		IAI47_15125	0.66	+0.2
3,189,704	+		IAI47_15125	0.66	-0.8
3,189,705	-		IAI47_15125	0.67	-0.7
3,189,705	-		IAI47_15125	0.67	-0.1
3,189,705	-		IAI47_15125	0.67	-0.5
3,189,705	-		IAI47_15125	0.67	-1.2
3,189,714	+		IAI47_15125	0.67	-0.2
3,189,714	+		IAI47_15125	0.67	+0.9
3,189,715	-		IAI47_15125	0.67	+0.8
3,189,715	-		IAI47_15125	0.67	-0.9
3,189,715	-		IAI47_15125	0.67	-2.8