Strain Fitness in Pantoea sp. MT58 around IAI47_14905

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
3,144,532	+		IAI47_14900	0.35	-1.1
3,144,532	+		IAI47_14900	0.35	-1.2
3,144,625	+		IAI47_14900	0.42	+0.5
3,144,731	+		IAI47_14900	0.50	+0.2
3,144,731	+		IAI47_14900	0.50	+0.1
3,144,732	-		IAI47_14900	0.50	-0.0
3,144,822	+		IAI47_14900	0.57	+0.9
3,144,823	-		IAI47_14900	0.57	+0.2
3,144,823	-		IAI47_14900	0.57	+0.4
3,144,823	-		IAI47_14900	0.57	+0.8
3,144,823	-		IAI47_14900	0.57	-0.5
3,144,823	-		IAI47_14900	0.57	-0.2
3,144,871	+		IAI47_14900	0.60	+1.0
3,144,871	+		IAI47_14900	0.60	-0.2
3,144,871	+		IAI47_14900	0.60	-0.1
3,144,883	+		IAI47_14900	0.61	+0.5
3,144,883	+		IAI47_14900	0.61	+0.5
3,144,883	+		IAI47_14900	0.61	+0.4
3,144,883	+		IAI47_14900	0.61	+0.3
3,144,883	+		IAI47_14900	0.61	-1.4
3,144,883	+		IAI47_14900	0.61	+0.0
3,144,883	+		IAI47_14900	0.61	-0.5
3,144,883	+		IAI47_14900	0.61	+0.5
3,144,883	+		IAI47_14900	0.61	+0.2
3,144,883	+		IAI47_14900	0.61	-0.2
3,144,883	+		IAI47_14900	0.61	-0.8
3,144,883	+		IAI47_14900	0.61	-0.1
3,144,884	-		IAI47_14900	0.61	+1.8
3,144,884	-		IAI47_14900	0.61	+0.2
3,144,884	-		IAI47_14900	0.61	+0.6
3,144,884	-		IAI47_14900	0.61	-0.2
3,144,884	-		IAI47_14900	0.61	-0.8
3,144,884	-		IAI47_14900	0.61	-1.4
3,144,884	-		IAI47_14900	0.61	-0.3
3,144,884	-		IAI47_14900	0.61	+0.7
3,144,884	-		IAI47_14900	0.61	-0.6
3,144,884	-		IAI47_14900	0.61	+0.7
3,144,884	-		IAI47_14900	0.61	+0.3
3,144,884	-		IAI47_14900	0.61	+0.8
3,144,884	-		IAI47_14900	0.61	-0.3
3,144,884	-		IAI47_14900	0.61	-1.8
3,144,934	+		IAI47_14900	0.65	+0.2
3,144,935	-		IAI47_14900	0.65	+0.8
3,144,935	-		IAI47_14900	0.65	-1.4
3,144,935	-		IAI47_14900	0.65	+1.3
3,144,945	-		IAI47_14900	0.66	+2.5
3,144,980	+		IAI47_14900	0.68	+0.2
3,145,050	+		IAI47_14900	0.73	+0.8
3,145,050	+		IAI47_14900	0.73	-0.7
3,145,051	-		IAI47_14900	0.73	-1.8
3,145,051	-		IAI47_14900	0.73	+0.3
3,145,071	-		IAI47_14900	0.75	-0.2
3,145,087	+		IAI47_14900	0.76	+0.4
3,145,087	+		IAI47_14900	0.76	-0.1
3,145,088	-		IAI47_14900	0.76	+0.7
3,145,088	-		IAI47_14900	0.76	+0.3
3,145,154	+		IAI47_14900	0.81	+0.1
3,145,154	+		IAI47_14900	0.81	+0.7
3,145,154	+		IAI47_14900	0.81	-0.4
3,145,154	+		IAI47_14900	0.81	-0.1
3,145,154	+		IAI47_14900	0.81	-0.1
3,145,154	+		IAI47_14900	0.81	+0.9
3,145,154	+		IAI47_14900	0.81	+0.7
3,145,154	+		IAI47_14900	0.81	+0.3
3,145,154	+		IAI47_14900	0.81	-0.3
3,145,155	-		IAI47_14900	0.81	+1.1
3,145,155	-		IAI47_14900	0.81	+1.3
3,145,155	-		IAI47_14900	0.81	+0.2
3,145,155	-		IAI47_14900	0.81	+1.2
3,145,155	-		IAI47_14900	0.81	-0.1
3,145,155	-		IAI47_14900	0.81	-0.7
3,145,180	+		IAI47_14900	0.83	-0.0
3,145,181	-		IAI47_14900	0.83	+1.3
3,145,297	+				-2.2
3,145,298	-				+0.4
3,145,343	+				+0.2
3,145,343	+				-0.4
3,145,344	-				+1.8
3,145,345	+				-0.5
3,145,345	+				-0.2
3,145,345	+				-0.1
3,145,346	-				-0.3
3,145,346	-				-1.4
3,145,346	-				-0.9
3,145,346	-				+0.5
3,145,346	-				-0.4
3,145,349	+				-1.4
3,145,349	+				+0.8
3,145,349	+				+0.7
3,145,349	+				-0.3
3,145,350	-				-0.2
3,145,350	-				-0.4
3,145,350	-				-0.1
3,145,350	-				+1.1
3,145,350	-				+0.2
3,145,350	-				-1.1
3,145,350	-				+0.8
3,145,350	-				+2.8
3,145,412	+				+0.2
3,145,413	-				-0.1
3,145,446	+				+0.2
3,145,447	-				+0.6
3,145,729	-		IAI47_14905	0.25	-0.1
3,145,729	-		IAI47_14905	0.25	-0.8
3,145,802	+		IAI47_14905	0.33	+0.5
3,145,802	+		IAI47_14905	0.33	-0.4
3,145,803	-		IAI47_14905	0.33	-0.0
3,145,803	-		IAI47_14905	0.33	-0.7
3,145,821	+		IAI47_14905	0.35	+0.4
3,145,822	-		IAI47_14905	0.35	+0.5
3,145,828	+		IAI47_14905	0.36	-0.2
3,145,829	-		IAI47_14905	0.36	-0.1
3,145,881	+		IAI47_14905	0.42	-1.2
3,145,882	-		IAI47_14905	0.42	-0.5
3,145,882	-		IAI47_14905	0.42	-1.4
3,145,999	+		IAI47_14905	0.55	+0.5
3,146,000	-		IAI47_14905	0.55	+0.2
3,146,023	+		IAI47_14905	0.57	-0.1
3,146,111	+		IAI47_14905	0.67	-0.0
3,146,111	+		IAI47_14905	0.67	-0.5
3,146,111	+		IAI47_14905	0.67	-1.4
3,146,111	+		IAI47_14905	0.67	-1.8
3,146,112	-		IAI47_14905	0.67	-1.0
3,146,112	-		IAI47_14905	0.67	+1.0
3,146,112	-		IAI47_14905	0.67	+0.3
3,146,112	-		IAI47_14905	0.67	-0.5
3,146,112	-		IAI47_14905	0.67	-0.8
3,146,112	-		IAI47_14905	0.67	+0.2
3,146,112	-		IAI47_14905	0.67	-0.8
3,146,194	+		IAI47_14905	0.76	-0.8
3,146,305	-		IAI47_14905	0.88	-0.4
3,146,321	-				-0.2
3,146,353	+				-0.1
3,146,354	-				-0.8
3,146,354	-				+0.3
3,146,354	-				-0.2
3,146,396	+				+1.2
3,146,396	+				+0.2
3,146,396	+				+2.2
3,146,396	+				+0.7
3,146,396	+				+0.8
3,146,396	+				-0.5
3,146,396	+				+0.1
3,146,396	+				-0.2
3,146,396	+				-0.5
3,146,396	+				-0.7
3,146,396	+				-1.1
3,146,396	+				+1.5
3,146,396	+				+1.6
3,146,396	+				+0.2
3,146,396	+				+0.4
3,146,397	-				-0.0
3,146,397	-				-0.1
3,146,397	-				+0.2
3,146,397	-				-0.2
3,146,397	-				-0.2
3,146,397	-				+0.1
3,146,397	-				-1.2
3,146,397	-				+0.0
3,146,397	-				+0.2
3,146,397	-				-0.2
3,146,397	-				-1.2
3,146,397	-				+0.8
3,146,397	-				+0.0
3,146,397	-				+0.1
3,146,397	-				-0.6
3,146,402	+				-0.2
3,146,402	+				-0.2
3,146,403	-				-0.5
3,146,403	-				-0.4
3,146,403	-				+0.3
3,146,414	+				+0.5
3,146,414	+				-0.9
3,146,414	+				+1.0
3,146,415	-				+0.2
3,146,415	-				-0.1
3,146,425	+				-0.8
3,146,425	+				+0.4
3,146,426	-				-0.2
3,146,444	+				-1.4
3,146,444	+				-0.3
3,146,444	+				-1.4
3,146,444	+				-0.1
3,146,445	-				+1.4
3,146,445	-				-0.7
3,146,445	-				+0.2
3,146,445	-				-0.1
3,146,445	-				+0.2
3,146,445	-				-0.0
3,146,445	-				+0.6
3,146,445	-				-0.2
3,146,445	-				-1.1
3,146,445	-				-0.5
3,146,445	-				-0.6
3,146,449	+				+0.4
3,146,450	-				-0.7
3,146,466	-				+1.3
3,146,569	-				-0.8
3,146,569	-				+0.6
3,146,574	+				+0.0
3,146,574	+				-0.5
3,146,575	-				+0.3
3,146,575	-				+0.2
3,146,575	-				-0.4
3,146,575	-				-1.2
3,146,585	-				-1.1
3,146,585	-				+0.2
3,146,673	+		IAI47_14910	0.13	-0.2
3,146,674	-		IAI47_14910	0.13	+1.6
3,146,674	-		IAI47_14910	0.13	+1.6
3,146,674	-		IAI47_14910	0.13	+0.8
3,146,736	+		IAI47_14910	0.20	+0.8
3,146,736	+		IAI47_14910	0.20	+0.5
3,146,736	+		IAI47_14910	0.20	+1.9
3,146,737	-		IAI47_14910	0.20	-1.0
3,146,896	-		IAI47_14910	0.37	+0.6
3,146,935	+		IAI47_14910	0.41	+1.5
3,146,935	+		IAI47_14910	0.41	+1.0
3,146,935	+		IAI47_14910	0.41	-1.0
3,146,935	+		IAI47_14910	0.41	+0.8
3,146,935	+		IAI47_14910	0.41	-0.1
3,146,936	-		IAI47_14910	0.42	+0.4
3,146,936	-		IAI47_14910	0.42	+0.2
3,146,936	-		IAI47_14910	0.42	+0.4
3,146,936	-		IAI47_14910	0.42	-0.7
3,146,936	-		IAI47_14910	0.42	+0.8
3,146,936	-		IAI47_14910	0.42	+0.7
3,146,936	-		IAI47_14910	0.42	+0.2
3,146,959	-		IAI47_14910	0.44	-0.2
3,146,967	+		IAI47_14910	0.45	+1.2
3,146,967	+		IAI47_14910	0.45	+2.8
3,147,003	+		IAI47_14910	0.49	+0.4
3,147,003	+		IAI47_14910	0.49	-0.6
3,147,004	-		IAI47_14910	0.49	-0.1
3,147,222	+		IAI47_14910	0.73	+2.6
3,147,273	+		IAI47_14910	0.79	+0.4
3,147,273	+		IAI47_14910	0.79	-0.4
3,147,273	+		IAI47_14910	0.79	+0.2
3,147,394	-				-0.1