Strain Fitness in Pantoea sp. MT58 around IAI47_14670

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
3,094,208	-				-1.4
3,094,239	+				-1.1
3,094,240	-				+0.2
3,094,240	-				-1.0
3,094,240	-				-0.6
3,094,245	+				-0.7
3,094,245	+				-0.1
3,094,246	-				+0.2
3,094,246	-				-0.8
3,094,246	-				-1.3
3,094,296	+				-1.3
3,094,296	+				-0.8
3,094,296	+				-1.6
3,094,296	+				+1.0
3,094,340	+				-0.5
3,094,340	+				-2.4
3,094,340	+				-2.1
3,094,341	-				+0.2
3,094,341	-				-1.8
3,094,341	-				-0.1
3,094,341	-				-0.8
3,094,345	-				-1.0
3,094,402	-				-1.2
3,094,446	+				-1.6
3,094,447	-				-0.4
3,094,447	-				-0.1
3,094,447	-				-0.8
3,094,447	-				-0.6
3,094,448	+				-0.8
3,094,448	+				-1.5
3,094,449	-				+1.3
3,094,449	-				-0.0
3,094,449	-				-0.3
3,094,479	+				+0.8
3,094,479	+				+0.4
3,094,479	+				-0.3
3,094,480	-				+1.2
3,094,480	-				-0.7
3,094,595	+				+0.0
3,094,627	-		IAI47_14665	0.14	-0.8
3,094,627	-		IAI47_14665	0.14	+0.4
3,094,632	-		IAI47_14665	0.15	-0.3
3,094,663	+		IAI47_14665	0.25	+0.2
3,094,663	+		IAI47_14665	0.25	+0.3
3,094,663	+		IAI47_14665	0.25	+0.8
3,094,663	+		IAI47_14665	0.25	+0.8
3,094,663	+		IAI47_14665	0.25	+1.8
3,094,664	-		IAI47_14665	0.25	+0.0
3,094,664	-		IAI47_14665	0.25	+0.3
3,094,664	-		IAI47_14665	0.25	-1.0
3,094,664	-		IAI47_14665	0.25	+0.4
3,094,664	-		IAI47_14665	0.25	-0.0
3,094,664	-		IAI47_14665	0.25	+0.2
3,094,664	-		IAI47_14665	0.25	+1.3
3,094,664	-		IAI47_14665	0.25	-0.6
3,094,664	-		IAI47_14665	0.25	+0.4
3,094,664	-		IAI47_14665	0.25	+0.2
3,094,667	+		IAI47_14665	0.26	-0.5
3,094,667	+		IAI47_14665	0.26	+0.2
3,094,667	+		IAI47_14665	0.26	+0.2
3,094,667	+		IAI47_14665	0.26	-0.2
3,094,667	+		IAI47_14665	0.26	-0.6
3,094,667	+		IAI47_14665	0.26	+1.8
3,094,667	+		IAI47_14665	0.26	+0.1
3,094,667	+		IAI47_14665	0.26	+0.2
3,094,667	+		IAI47_14665	0.26	+0.2
3,094,668	-		IAI47_14665	0.27	+0.7
3,094,668	-		IAI47_14665	0.27	-0.2
3,094,668	-		IAI47_14665	0.27	+1.3
3,094,668	-		IAI47_14665	0.27	-0.1
3,094,668	-		IAI47_14665	0.27	-1.6
3,094,668	-		IAI47_14665	0.27	+0.2
3,094,668	-		IAI47_14665	0.27	+0.2
3,094,668	-		IAI47_14665	0.27	+0.8
3,094,668	-		IAI47_14665	0.27	-0.8
3,094,668	-		IAI47_14665	0.27	+1.5
3,094,668	-		IAI47_14665	0.27	-0.9
3,094,668	-		IAI47_14665	0.27	+0.9
3,094,668	-		IAI47_14665	0.27	+0.7
3,094,668	-		IAI47_14665	0.27	-0.8
3,094,668	-		IAI47_14665	0.27	-1.1
3,094,668	-		IAI47_14665	0.27	-0.2
3,094,677	+		IAI47_14665	0.30	+0.1
3,094,678	-		IAI47_14665	0.30	+0.1
3,094,720	+		IAI47_14665	0.43	-1.8
3,094,721	-		IAI47_14665	0.43	+0.2
3,094,721	-		IAI47_14665	0.43	-0.7
3,094,726	-		IAI47_14665	0.45	-0.5
3,094,726	-		IAI47_14665	0.45	-0.8
3,094,822	+		IAI47_14665	0.76	-0.2
3,094,881	+				+0.9
3,094,881	+				+0.6
3,094,882	-				+0.2
3,094,882	-				-1.0
3,094,902	+				+0.4
3,094,902	+				-0.1
3,094,903	-				-1.0
3,094,903	-				-0.2
3,094,903	-				+0.6
3,094,903	-				-0.6
3,094,905	+				+3.0
3,094,905	+				-1.4
3,094,905	+				-1.1
3,094,905	+				-0.7
3,094,905	+				+1.3
3,094,905	+				+0.6
3,094,905	+				+0.6
3,094,905	+				-0.7
3,094,905	+				-1.8
3,094,906	-				-3.6
3,094,906	-				+0.5
3,094,906	-				-0.4
3,094,948	-				+0.0
3,094,984	-				+0.2
3,094,984	-				+3.0
3,094,987	+				+0.5
3,094,988	-				-0.6
3,094,988	-				+0.2
3,094,997	+				-0.4
3,094,997	+				+0.9
3,094,998	-				-1.0
3,094,998	-				+0.2
3,095,022	+				-0.1
3,095,022	+				+0.2
3,095,022	+				-0.1
3,095,023	-				+0.9
3,095,023	-				+0.6
3,095,023	-				-0.0
3,095,023	-				-1.0
3,095,025	+				+0.7
3,095,025	+				-0.0
3,095,025	+				-0.1
3,095,025	+				-0.4
3,095,025	+				+0.9
3,095,025	+				-0.6
3,095,025	+				-0.1
3,095,026	-				-1.4
3,095,026	-				+1.2
3,095,026	-				+1.8
3,095,026	-				-1.1
3,095,026	-				+0.2
3,095,027	-				-0.9
3,095,030	+				-0.1
3,095,030	+				-0.5
3,095,030	+				+0.2
3,095,030	+				-0.4
3,095,030	+				-0.7
3,095,031	-				-0.4
3,095,031	-				+0.0
3,095,031	-				+1.5
3,095,031	-				+0.2
3,095,031	-				+0.6
3,095,051	+				-0.1
3,095,052	-				-0.8
3,095,052	-				+2.0
3,095,052	-				-0.7
3,095,052	-				-2.6
3,095,052	-				+0.9
3,095,072	+				-0.2
3,095,072	+				-1.0
3,095,072	+				-1.8
3,095,072	+				-0.7
3,095,073	-				-0.2
3,095,132	+				-1.1
3,095,132	+				+0.4
3,095,132	+				+1.8
3,095,132	+				-0.8
3,095,132	+				+0.1
3,095,132	+				+0.2
3,095,132	+				-2.9
3,095,133	-				+0.2
3,095,133	-				-0.8
3,095,133	-				-1.4
3,095,133	-				-2.5
3,095,133	-				-1.3
3,095,133	-				-1.1
3,095,133	-				-1.0
3,095,184	+				-1.4
3,095,184	+				-0.4
3,095,185	-				-3.0
3,095,185	-				-1.6
3,095,201	+				-2.0
3,095,202	-				-0.1
3,095,202	-				-0.8
3,095,228	+				+0.2
3,095,250	+		IAI47_14670	0.11	-1.0
3,095,250	+		IAI47_14670	0.11	-2.6
3,095,251	-		IAI47_14670	0.11	+0.2
3,095,251	-		IAI47_14670	0.11	-1.1
3,095,251	-		IAI47_14670	0.11	-2.0
3,095,251	-		IAI47_14670	0.11	-2.1
3,095,251	-		IAI47_14670	0.11	+0.2
3,095,254	-		IAI47_14670	0.12	-2.1
3,095,254	-		IAI47_14670	0.12	-1.5
3,095,254	-		IAI47_14670	0.12	-1.0
3,095,272	-		IAI47_14670	0.15	-2.6
3,095,312	+		IAI47_14670	0.22	+0.2
3,095,313	-		IAI47_14670	0.22	-1.4
3,095,367	-		IAI47_14670	0.31	-1.1
3,095,384	+		IAI47_14670	0.34	-1.4
3,095,384	+		IAI47_14670	0.34	-1.0
3,095,384	+		IAI47_14670	0.34	-2.5
3,095,385	-		IAI47_14670	0.35	-0.9
3,095,394	-		IAI47_14670	0.36	-0.2
3,095,394	-		IAI47_14670	0.36	-0.7
3,095,394	-		IAI47_14670	0.36	-2.4
3,095,461	+		IAI47_14670	0.48	-0.8
3,095,461	+		IAI47_14670	0.48	-1.2
3,095,461	+		IAI47_14670	0.48	-2.4
3,095,461	+		IAI47_14670	0.48	-1.1
3,095,462	-		IAI47_14670	0.48	-1.8
3,095,462	-		IAI47_14670	0.48	-2.3
3,095,463	+		IAI47_14670	0.48	-2.8
3,095,463	+		IAI47_14670	0.48	+1.2
3,095,463	+		IAI47_14670	0.48	-0.2
3,095,463	+		IAI47_14670	0.48	-1.8
3,095,463	+		IAI47_14670	0.48	-0.4
3,095,463	+		IAI47_14670	0.48	+1.2
3,095,463	+		IAI47_14670	0.48	-1.1
3,095,463	+		IAI47_14670	0.48	-0.4
3,095,463	+		IAI47_14670	0.48	+0.8
3,095,463	+		IAI47_14670	0.48	-1.3
3,095,463	+		IAI47_14670	0.48	-1.0
3,095,463	+		IAI47_14670	0.48	-1.6
3,095,463	+		IAI47_14670	0.48	-1.3
3,095,464	-		IAI47_14670	0.48	-1.6
3,095,464	-		IAI47_14670	0.48	-3.5
3,095,464	-		IAI47_14670	0.48	-2.1
3,095,464	-		IAI47_14670	0.48	-0.8
3,095,464	-		IAI47_14670	0.48	-0.8
3,095,464	-		IAI47_14670	0.48	-2.4
3,095,464	-		IAI47_14670	0.48	-1.0
3,095,464	-		IAI47_14670	0.48	-1.3
3,095,464	-		IAI47_14670	0.48	+2.5
3,095,464	-		IAI47_14670	0.48	-1.6
3,095,464	-		IAI47_14670	0.48	-1.8
3,095,464	-		IAI47_14670	0.48	-1.2
3,095,464	-		IAI47_14670	0.48	-3.0
3,095,464	-		IAI47_14670	0.48	-2.0
3,095,464	-		IAI47_14670	0.48	-0.6
3,095,475	+		IAI47_14670	0.50	-0.4
3,095,475	+		IAI47_14670	0.50	-3.0
3,095,476	-		IAI47_14670	0.50	-1.3
3,095,476	-		IAI47_14670	0.50	-2.1
3,095,505	+		IAI47_14670	0.55	+0.2
3,095,515	+		IAI47_14670	0.57	+0.6
3,095,515	+		IAI47_14670	0.57	-0.0
3,095,515	+		IAI47_14670	0.57	-2.3
3,095,515	+		IAI47_14670	0.57	-1.8
3,095,515	+		IAI47_14670	0.57	-0.8
3,095,516	-		IAI47_14670	0.57	-3.5
3,095,516	-		IAI47_14670	0.57	-2.4
3,095,516	-		IAI47_14670	0.57	-3.0
3,095,516	-		IAI47_14670	0.57	-0.4
3,095,516	-		IAI47_14670	0.57	-0.8
3,095,516	-		IAI47_14670	0.57	-0.4
3,095,516	-		IAI47_14670	0.57	-2.4
3,095,516	-		IAI47_14670	0.57	-1.9
3,095,547	+		IAI47_14670	0.63	-2.8
3,095,547	+		IAI47_14670	0.63	+0.6
3,095,548	-		IAI47_14670	0.63	-0.6
3,095,548	-		IAI47_14670	0.63	-3.0
3,095,548	-		IAI47_14670	0.63	-2.3
3,095,548	-		IAI47_14670	0.63	-0.9
3,095,548	-		IAI47_14670	0.63	+0.2
3,095,548	-		IAI47_14670	0.63	-2.0
3,095,548	-		IAI47_14670	0.63	-2.3
3,095,548	-		IAI47_14670	0.63	-1.9
3,095,548	-		IAI47_14670	0.63	-1.1
3,095,548	-		IAI47_14670	0.63	-2.0
3,095,548	-		IAI47_14670	0.63	-1.8
3,095,610	+		IAI47_14670	0.73	-2.4
3,095,629	+		IAI47_14670	0.77	-2.6
3,095,629	+		IAI47_14670	0.77	-0.5
3,095,630	-		IAI47_14670	0.77	-0.8
3,095,630	-		IAI47_14670	0.77	-2.1
3,095,630	-		IAI47_14670	0.77	+0.2
3,095,636	+		IAI47_14670	0.78	+1.8
3,095,636	+		IAI47_14670	0.78	-0.8
3,095,636	+		IAI47_14670	0.78	-3.4
3,095,637	-		IAI47_14670	0.78	-1.7
3,095,637	-		IAI47_14670	0.78	-1.4
3,095,637	-		IAI47_14670	0.78	-0.4
3,095,637	-		IAI47_14670	0.78	-2.0
3,095,637	-		IAI47_14670	0.78	+0.8
3,095,637	-		IAI47_14670	0.78	-2.3
3,095,637	-		IAI47_14670	0.78	-2.3
3,095,658	+		IAI47_14670	0.82	+0.2
3,095,683	-		IAI47_14670	0.86	-2.1
3,095,762	-				-0.2
3,095,762	-				-1.0
3,095,762	-				+1.2
3,095,805	+				+1.2
3,095,830	+				+0.2
3,095,830	+				-0.1
3,095,830	+				-0.5
3,095,831	-				-0.4
3,095,831	-				-0.3
3,095,831	-				-1.4
3,095,865	-				-0.6
3,095,865	-				-0.0
3,095,954	+				+0.4
3,095,954	+				+0.4
3,095,992	+		IAI47_14675	0.11	-0.4
3,095,992	+		IAI47_14675	0.11	+1.0
3,095,992	+		IAI47_14675	0.11	-0.4
3,095,992	+		IAI47_14675	0.11	-0.1
3,095,993	-		IAI47_14675	0.12	+0.2
3,095,993	-		IAI47_14675	0.12	-0.4
3,095,993	-		IAI47_14675	0.12	-0.6
3,096,000	+		IAI47_14675	0.12	-0.8
3,096,001	-		IAI47_14675	0.12	+0.8
3,096,031	+		IAI47_14675	0.14	+1.3
3,096,032	-		IAI47_14675	0.14	-1.7
3,096,033	+		IAI47_14675	0.14	-0.2
3,096,033	+		IAI47_14675	0.14	-0.6
3,096,033	+		IAI47_14675	0.14	-1.1
3,096,192	+		IAI47_14675	0.25	-2.8
3,096,192	+		IAI47_14675	0.25	+0.4
3,096,193	-		IAI47_14675	0.25	-2.6
3,096,193	-		IAI47_14675	0.25	-0.3
3,096,272	-		IAI47_14675	0.30	-0.4
3,096,272	-		IAI47_14675	0.30	-0.4
3,096,325	+		IAI47_14675	0.34	-0.6
3,096,326	-		IAI47_14675	0.34	-1.2
3,096,347	-		IAI47_14675	0.35	-0.9
3,096,379	-		IAI47_14675	0.37	-1.3
3,096,382	-		IAI47_14675	0.38	+1.8
3,096,423	+		IAI47_14675	0.40	+0.8
3,096,463	-		IAI47_14675	0.43	+0.6
3,096,480	+		IAI47_14675	0.44	-0.8
3,096,480	+		IAI47_14675	0.44	-0.4
3,096,481	-		IAI47_14675	0.44	+0.4
3,096,481	-		IAI47_14675	0.44	-0.6
3,096,501	+		IAI47_14675	0.46	+0.2
3,096,510	+		IAI47_14675	0.46	+0.3
3,096,510	+		IAI47_14675	0.46	+0.2
3,096,511	-		IAI47_14675	0.46	+1.2
3,096,517	+		IAI47_14675	0.47	-0.9
3,096,517	+		IAI47_14675	0.47	-0.1
3,096,649	+		IAI47_14675	0.56	-2.1
3,096,650	-		IAI47_14675	0.56	+2.0
3,096,650	-		IAI47_14675	0.56	-0.3