Strain Fitness in Pantoea sp. MT58 around IAI47_14645

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
3,087,096	+		IAI47_14635	0.87	+1.0
3,087,097	-		IAI47_14635	0.87	+0.2
3,087,097	-		IAI47_14635	0.87	+1.2
3,087,097	-		IAI47_14635	0.87	+0.9
3,087,097	-		IAI47_14635	0.87	+1.8
3,087,097	-		IAI47_14635	0.87	-0.1
3,087,097	-		IAI47_14635	0.87	+1.2
3,087,097	-		IAI47_14635	0.87	-1.4
3,087,209	-				-0.4
3,087,222	+				+0.2
3,087,223	-				-0.5
3,087,223	-				-0.8
3,087,223	-				+0.3
3,087,223	-				+0.8
3,087,247	-				+0.2
3,087,247	-				+0.5
3,087,247	-				-0.1
3,087,247	-				-0.6
3,087,280	+				+1.5
3,087,280	+				+1.3
3,087,281	-				-0.9
3,087,281	-				+0.6
3,087,281	-				-0.8
3,087,296	-				-1.4
3,087,296	-				+0.0
3,087,296	-				+1.5
3,087,346	+				+0.8
3,087,364	+				+0.6
3,087,364	+				+1.0
3,087,364	+				-0.3
3,087,364	+				+1.2
3,087,365	-				-1.8
3,087,375	+				-0.0
3,087,375	+				+1.3
3,087,375	+				+0.3
3,087,376	-				-1.0
3,087,376	-				+0.9
3,087,427	+				+1.8
3,087,428	-				-0.2
3,087,428	-				-0.1
3,087,483	-				+0.8
3,087,519	+				+0.5
3,087,519	+				+1.9
3,087,520	-				+0.6
3,087,520	-				+0.5
3,087,520	-				+1.6
3,087,524	+				+1.8
3,087,524	+				+1.8
3,087,524	+				+0.4
3,087,524	+				+0.8
3,087,524	+				+2.2
3,087,524	+				+1.8
3,087,524	+				+0.8
3,087,525	-				-1.6
3,087,525	-				+1.3
3,087,525	-				+0.4
3,087,525	-				+0.6
3,087,525	-				+1.8
3,087,525	-				+1.6
3,087,525	-				+1.0
3,087,525	-				+2.2
3,087,525	-				+0.2
3,087,525	-				+1.5
3,087,539	+				+1.7
3,087,540	-				+0.8
3,087,550	+				+2.2
3,087,551	-				+1.1
3,087,551	-				+0.9
3,087,581	+				+1.7
3,087,581	+				+1.2
3,087,582	-				+1.9
3,087,592	-				+0.5
3,087,592	-				+1.2
3,087,595	-				-0.6
3,087,595	-				+1.2
3,087,691	+		IAI47_14640	0.36	-0.3
3,087,692	-		IAI47_14640	0.36	+1.3
3,087,781	+		IAI47_14640	0.69	+2.1
3,087,781	+		IAI47_14640	0.69	+0.0
3,087,782	-		IAI47_14640	0.69	+1.3
3,087,782	-		IAI47_14640	0.69	+1.2
3,087,791	+		IAI47_14640	0.73	+1.1
3,087,791	+		IAI47_14640	0.73	+0.7
3,087,792	-		IAI47_14640	0.73	+1.5
3,087,792	-		IAI47_14640	0.73	+1.8
3,087,814	+		IAI47_14640	0.81	+1.1
3,087,814	+		IAI47_14640	0.81	-0.0
3,087,814	+		IAI47_14640	0.81	+0.6
3,087,820	+		IAI47_14640	0.83	+1.2
3,087,820	+		IAI47_14640	0.83	+1.1
3,087,821	-		IAI47_14640	0.84	+1.2
3,087,859	+				+0.9
3,087,859	+				+1.4
3,087,859	+				+0.5
3,087,859	+				+1.0
3,087,859	+				+1.7
3,087,860	-				+1.0
3,087,860	-				+2.5
3,087,868	+				+1.2
3,087,868	+				+1.3
3,087,868	+				+2.3
3,087,868	+				+1.4
3,087,868	+				+2.2
3,087,868	+				+1.2
3,087,869	-				-0.6
3,087,869	-				+1.8
3,087,869	-				+0.1
3,087,869	-				+1.3
3,087,869	-				+2.8
3,087,884	+				-0.1
3,087,884	+				+1.8
3,087,884	+				+1.2
3,087,885	-				+2.5
3,087,887	+				+1.7
3,087,888	-				+2.3
3,087,888	-				+1.0
3,087,936	+				+1.9
3,087,936	+				+1.4
3,087,936	+				+1.4
3,087,936	+				+0.9
3,087,936	+				+2.2
3,087,936	+				+0.7
3,087,936	+				+3.2
3,087,936	+				+1.6
3,087,936	+				+1.2
3,087,937	-				+1.4
3,087,937	-				+1.2
3,087,937	-				+1.3
3,087,937	-				+1.4
3,087,937	-				+1.3
3,087,937	-				-0.5
3,087,937	-				+1.4
3,087,937	-				+1.2
3,087,937	-				+1.6
3,087,937	-				+1.1
3,087,938	+				+1.4
3,087,939	-				+1.6
3,087,939	-				+0.8
3,087,939	-				+2.4
3,087,965	+				+1.8
3,087,965	+				+1.4
3,087,965	+				+1.8
3,087,966	-				+2.1
3,087,966	-				+1.7
3,087,966	-				+0.6
3,087,999	+				+0.4
3,088,000	-				-0.3
3,088,004	+				+1.5
3,088,005	-				+0.2
3,088,058	+				+2.1
3,088,066	+				+0.6
3,088,066	+				-0.6
3,088,067	-				+0.2
3,088,067	-				+1.0
3,088,081	+				+0.2
3,088,082	-				+0.6
3,088,082	-				+1.2
3,088,108	+				+0.2
3,088,108	+				-0.0
3,088,108	+				+2.5
3,088,109	-				+0.8
3,088,109	-				-0.0
3,088,109	-				-0.6
3,090,453	-				+0.0
3,090,453	-				+1.3
3,090,490	-				+1.2
3,090,490	-				-1.4
3,090,490	-				-0.0
3,090,490	-				-0.4
3,090,510	-				-1.1
3,090,518	-				-0.5
3,090,518	-				-1.1
3,090,518	-				-0.4
3,090,518	-				-0.2
3,090,518	-				+0.3
3,090,518	-				-0.2
3,090,518	-				+0.8
3,090,518	-				-0.4
3,090,518	-				+0.6
3,090,518	-				+0.2
3,090,518	-				-1.4
3,090,520	-				-0.6
3,090,520	-				-0.6
3,090,592	+				-0.2
3,090,593	-				-1.3
3,090,595	+				-0.7
3,090,595	+				-1.2
3,090,596	-				-0.8
3,090,651	-				+0.7
3,090,651	-				+0.4
3,090,651	-				-0.4
3,090,651	-				-0.5