Strain Fitness in Pantoea sp. MT58 around IAI47_14635

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
3,084,483	+				+0.2
3,084,484	-				-0.5
3,084,484	-				-0.1
3,084,484	-				-0.6
3,084,512	+				-0.1
3,084,512	+				-0.5
3,084,513	-				-0.1
3,084,513	-				+0.6
3,084,556	+		IAI47_14625	0.19	-0.2
3,084,625	+		IAI47_14625	0.36	+0.8
3,084,626	-		IAI47_14625	0.36	-0.4
3,084,637	+		IAI47_14625	0.39	+1.4
3,084,638	-		IAI47_14625	0.39	-1.2
3,084,668	-		IAI47_14625	0.47	+0.5
3,084,674	+		IAI47_14625	0.48	-0.3
3,084,675	-		IAI47_14625	0.48	-0.8
3,084,675	-		IAI47_14625	0.48	+0.2
3,084,702	+		IAI47_14625	0.55	-0.4
3,084,702	+		IAI47_14625	0.55	-1.1
3,084,703	-		IAI47_14625	0.55	-0.8
3,084,703	-		IAI47_14625	0.55	-2.1
3,084,813	+		IAI47_14625	0.83	+0.8
3,084,813	+		IAI47_14625	0.83	+0.2
3,084,813	+		IAI47_14625	0.83	-1.8
3,084,814	-		IAI47_14625	0.83	-0.8
3,084,814	-		IAI47_14625	0.83	+0.2
3,084,814	-		IAI47_14625	0.83	+0.4
3,084,814	-		IAI47_14625	0.83	+0.6
3,084,814	-		IAI47_14625	0.83	+0.6
3,084,814	-		IAI47_14625	0.83	+0.1
3,084,837	+		IAI47_14625	0.89	+1.8
3,084,837	+		IAI47_14625	0.89	+1.2
3,084,838	-		IAI47_14625	0.89	-0.1
3,084,838	-		IAI47_14625	0.89	+1.4
3,084,852	+				+1.2
3,084,853	-				-1.1
3,084,866	+				-0.6
3,084,866	+				+0.1
3,084,866	+				-0.1
3,084,866	+				-0.3
3,084,866	+				+0.7
3,084,866	+				+0.7
3,084,867	-				-0.1
3,084,867	-				+0.6
3,084,867	-				+0.2
3,084,897	+				+0.2
3,084,898	-				+1.2
3,084,902	+				+0.2
3,084,902	+				+0.8
3,084,902	+				-0.8
3,084,902	+				-0.7
3,084,902	+				-0.3
3,084,902	+				+0.7
3,084,903	-				-0.5
3,084,903	-				+0.2
3,084,903	-				+0.0
3,084,903	-				-0.6
3,084,903	-				+0.0
3,084,908	-				-0.8
3,084,931	-				+1.6
3,084,957	+				-0.5
3,084,957	+				-2.6
3,084,957	+				+0.1
3,084,957	+				-0.2
3,084,957	+				+0.2
3,084,957	+				+0.5
3,084,957	+				+0.8
3,084,958	-				-0.0
3,084,958	-				-0.3
3,084,974	+				-0.2
3,084,974	+				+0.5
3,084,975	-				+0.5
3,084,975	-				+1.1
3,084,975	-				+1.2
3,085,011	+				+1.3
3,085,011	+				-0.8
3,085,011	+				+1.0
3,085,012	-				+3.8
3,085,012	-				+0.1
3,085,012	-				+0.2
3,085,044	-		IAI47_14630	0.18	+0.6
3,085,073	-		IAI47_14630	0.26	+0.2
3,085,084	+		IAI47_14630	0.29	+0.2
3,085,085	-		IAI47_14630	0.29	-0.3
3,085,085	-		IAI47_14630	0.29	+0.0
3,085,085	-		IAI47_14630	0.29	+0.4
3,085,085	-		IAI47_14630	0.29	-0.1
3,085,117	-		IAI47_14630	0.38	+2.0
3,085,117	-		IAI47_14630	0.38	+0.7
3,085,117	-		IAI47_14630	0.38	+0.2
3,085,163	+		IAI47_14630	0.51	+0.3
3,085,163	+		IAI47_14630	0.51	+0.4
3,085,164	-		IAI47_14630	0.52	-3.3
3,085,188	+		IAI47_14630	0.58	+0.2
3,085,189	-		IAI47_14630	0.59	+0.5
3,085,189	-		IAI47_14630	0.59	+0.2
3,085,215	+		IAI47_14630	0.66	-2.8
3,085,271	+		IAI47_14630	0.82	-0.5
3,085,271	+		IAI47_14630	0.82	+1.6
3,085,271	+		IAI47_14630	0.82	-0.6
3,085,272	-		IAI47_14630	0.82	-0.2
3,085,272	-		IAI47_14630	0.82	+2.1
3,085,307	-				+0.2
3,085,322	+				-0.4
3,085,322	+				-0.5
3,085,323	-				-0.5
3,085,328	+				-0.8
3,085,356	-				+0.2
3,085,476	+				+1.0
3,085,476	+				-0.6
3,085,476	+				-0.2
3,085,477	-				+2.5
3,085,477	-				+1.8
3,085,477	-				-0.4
3,085,501	-				+0.2
3,085,501	-				+0.4
3,085,501	-				+0.7
3,085,504	+				+0.2
3,085,519	+				+1.3
3,085,520	-				-0.1
3,085,520	-				+0.2
3,085,561	+				-0.0
3,085,561	+				+0.3
3,085,562	-				+0.7
3,085,562	-				+1.8
3,085,562	-				-0.8
3,085,562	-				+0.8
3,085,562	-				+0.2
3,085,562	-				-0.3
3,085,621	+				-0.3
3,085,627	+				+0.9
3,085,627	+				+0.9
3,085,628	-				+1.2
3,085,644	-				+2.2
3,085,660	+				+0.6
3,085,661	-				+0.2
3,085,661	-				+2.5
3,085,661	-				-0.4
3,085,661	-				+0.9
3,085,661	-				-1.6
3,085,661	-				+0.9
3,085,711	+		IAI47_14635	0.13	+0.6
3,085,711	+		IAI47_14635	0.13	+0.7
3,085,711	+		IAI47_14635	0.13	+0.5
3,085,711	+		IAI47_14635	0.13	+1.3
3,085,711	+		IAI47_14635	0.13	+0.4
3,085,712	-		IAI47_14635	0.13	+1.3
3,085,712	-		IAI47_14635	0.13	-1.0
3,085,745	-		IAI47_14635	0.14	+0.9
3,085,832	-		IAI47_14635	0.19	+0.2
3,085,832	-		IAI47_14635	0.19	+1.2
3,085,832	-		IAI47_14635	0.19	-0.1
3,085,864	+		IAI47_14635	0.21	+0.2
3,085,864	+		IAI47_14635	0.21	+1.1
3,085,864	+		IAI47_14635	0.21	+0.2
3,085,864	+		IAI47_14635	0.21	+1.2
3,085,865	-		IAI47_14635	0.21	+0.6
3,085,873	+		IAI47_14635	0.21	-0.2
3,085,873	+		IAI47_14635	0.21	-0.1
3,085,873	+		IAI47_14635	0.21	-1.4
3,085,873	+		IAI47_14635	0.21	+3.6
3,085,874	-		IAI47_14635	0.21	-0.8
3,085,874	-		IAI47_14635	0.21	+1.6
3,085,916	+		IAI47_14635	0.24	+1.5
3,085,916	+		IAI47_14635	0.24	-0.1
3,085,942	+		IAI47_14635	0.25	-0.0
3,085,942	+		IAI47_14635	0.25	-0.5
3,085,943	-		IAI47_14635	0.25	-0.3
3,086,029	+		IAI47_14635	0.30	+2.0
3,086,030	-		IAI47_14635	0.30	+0.6
3,086,078	-		IAI47_14635	0.32	-1.0
3,086,190	+		IAI47_14635	0.38	-0.8
3,086,190	+		IAI47_14635	0.38	+0.5
3,086,191	-		IAI47_14635	0.38	-0.2
3,086,261	-		IAI47_14635	0.42	-0.2
3,086,261	-		IAI47_14635	0.42	-1.1
3,086,261	-		IAI47_14635	0.42	+0.5
3,086,278	+		IAI47_14635	0.43	+2.2
3,086,278	+		IAI47_14635	0.43	+0.3
3,086,401	+		IAI47_14635	0.50	+0.0
3,086,402	-		IAI47_14635	0.50	+1.3
3,086,425	+		IAI47_14635	0.51	+1.0
3,086,425	+		IAI47_14635	0.51	+0.6
3,086,426	-		IAI47_14635	0.51	+1.6
3,086,426	-		IAI47_14635	0.51	-0.4
3,086,426	-		IAI47_14635	0.51	+0.8
3,086,532	+		IAI47_14635	0.57	+2.0
3,086,533	-		IAI47_14635	0.57	+3.2
3,086,554	+		IAI47_14635	0.58	+0.4
3,086,554	+		IAI47_14635	0.58	+1.8
3,086,554	+		IAI47_14635	0.58	+1.0
3,086,554	+		IAI47_14635	0.58	-0.6
3,086,554	+		IAI47_14635	0.58	+0.4
3,086,555	-		IAI47_14635	0.58	+1.8
3,086,555	-		IAI47_14635	0.58	-0.1
3,086,555	-		IAI47_14635	0.58	+1.9
3,086,557	-		IAI47_14635	0.58	-0.2
3,086,557	-		IAI47_14635	0.58	+0.1
3,086,557	-		IAI47_14635	0.58	+0.3
3,086,557	-		IAI47_14635	0.58	+0.6
3,086,566	+		IAI47_14635	0.58	+1.1
3,086,566	+		IAI47_14635	0.58	+1.2
3,086,566	+		IAI47_14635	0.58	+0.7
3,086,567	-		IAI47_14635	0.58	+0.3
3,086,577	+		IAI47_14635	0.59	-0.0
3,086,578	-		IAI47_14635	0.59	+0.2
3,086,639	-		IAI47_14635	0.62	+0.4
3,086,639	-		IAI47_14635	0.62	+0.5
3,086,640	+		IAI47_14635	0.62	+0.6
3,086,640	+		IAI47_14635	0.62	-0.1
3,086,640	+		IAI47_14635	0.62	+1.2
3,086,640	+		IAI47_14635	0.62	+0.5
3,086,640	+		IAI47_14635	0.62	+0.5
3,086,640	+		IAI47_14635	0.62	+0.8
3,086,640	+		IAI47_14635	0.62	+0.7
3,086,641	-		IAI47_14635	0.62	+0.5
3,086,641	-		IAI47_14635	0.62	-0.8
3,086,641	-		IAI47_14635	0.62	-0.8
3,086,641	-		IAI47_14635	0.62	+0.7
3,086,641	-		IAI47_14635	0.62	-0.4
3,086,641	-		IAI47_14635	0.62	+1.2
3,086,668	+		IAI47_14635	0.64	+0.7
3,086,669	-		IAI47_14635	0.64	+2.5
3,086,681	-		IAI47_14635	0.65	-0.4
3,086,681	-		IAI47_14635	0.65	+0.7
3,086,691	+		IAI47_14635	0.65	+0.2
3,086,691	+		IAI47_14635	0.65	+1.2
3,086,692	-		IAI47_14635	0.65	+1.8
3,086,692	-		IAI47_14635	0.65	-0.6
3,086,800	+		IAI47_14635	0.71	+0.6
3,086,801	-		IAI47_14635	0.71	+0.5
3,086,833	+		IAI47_14635	0.73	+0.6
3,086,833	+		IAI47_14635	0.73	+0.5
3,086,833	+		IAI47_14635	0.73	-0.6
3,086,833	+		IAI47_14635	0.73	+0.1
3,086,833	+		IAI47_14635	0.73	+0.7
3,086,834	-		IAI47_14635	0.73	+0.2
3,086,834	-		IAI47_14635	0.73	+1.0
3,086,845	+		IAI47_14635	0.73	-0.7
3,086,846	-		IAI47_14635	0.73	+0.6
3,086,846	-		IAI47_14635	0.73	-0.1
3,086,860	+		IAI47_14635	0.74	+0.5
3,086,872	+		IAI47_14635	0.75	+0.7
3,086,889	+		IAI47_14635	0.76	+1.1
3,086,889	+		IAI47_14635	0.76	+1.0
3,086,890	-		IAI47_14635	0.76	-0.2
3,086,890	-		IAI47_14635	0.76	-0.4
3,086,932	-		IAI47_14635	0.78	+1.2
3,086,932	-		IAI47_14635	0.78	-0.1
3,086,932	-		IAI47_14635	0.78	+1.0
3,086,983	+		IAI47_14635	0.81	+0.7
3,086,984	-		IAI47_14635	0.81	+0.7
3,086,984	-		IAI47_14635	0.81	+1.8
3,086,992	+		IAI47_14635	0.81	+1.0
3,086,992	+		IAI47_14635	0.81	+0.7
3,086,992	+		IAI47_14635	0.81	+0.4
3,086,993	-		IAI47_14635	0.81	+0.8
3,087,033	+		IAI47_14635	0.83	+0.4
3,087,033	+		IAI47_14635	0.83	+0.4
3,087,033	+		IAI47_14635	0.83	+0.6
3,087,033	+		IAI47_14635	0.83	+0.8
3,087,033	+		IAI47_14635	0.83	+0.9
3,087,034	-		IAI47_14635	0.83	+0.2
3,087,034	-		IAI47_14635	0.83	+1.2
3,087,059	+		IAI47_14635	0.85	+1.0
3,087,059	+		IAI47_14635	0.85	+1.6
3,087,096	+		IAI47_14635	0.87	+1.0
3,087,097	-		IAI47_14635	0.87	+0.2
3,087,097	-		IAI47_14635	0.87	+1.2
3,087,097	-		IAI47_14635	0.87	+0.9
3,087,097	-		IAI47_14635	0.87	+1.8
3,087,097	-		IAI47_14635	0.87	-0.1
3,087,097	-		IAI47_14635	0.87	+1.2
3,087,097	-		IAI47_14635	0.87	-1.4
3,087,209	-				-0.4
3,087,222	+				+0.2
3,087,223	-				-0.5
3,087,223	-				-0.8
3,087,223	-				+0.3
3,087,223	-				+0.8
3,087,247	-				+0.2
3,087,247	-				+0.5
3,087,247	-				-0.1
3,087,247	-				-0.6
3,087,280	+				+1.5
3,087,280	+				+1.3
3,087,281	-				-0.9
3,087,281	-				+0.6
3,087,281	-				-0.8
3,087,296	-				-1.4
3,087,296	-				+0.0
3,087,296	-				+1.5
3,087,346	+				+0.8
3,087,364	+				+0.6
3,087,364	+				+1.0
3,087,364	+				-0.3
3,087,364	+				+1.2
3,087,365	-				-1.8
3,087,375	+				-0.0
3,087,375	+				+1.3
3,087,375	+				+0.3
3,087,376	-				-1.0
3,087,376	-				+0.9
3,087,427	+				+1.8
3,087,428	-				-0.2
3,087,428	-				-0.1
3,087,483	-				+0.8
3,087,519	+				+0.5
3,087,519	+				+1.9
3,087,520	-				+0.6
3,087,520	-				+0.5
3,087,520	-				+1.6
3,087,524	+				+1.8
3,087,524	+				+1.8
3,087,524	+				+0.4
3,087,524	+				+0.8
3,087,524	+				+2.2
3,087,524	+				+1.8
3,087,524	+				+0.8
3,087,525	-				-1.6
3,087,525	-				+1.3
3,087,525	-				+0.4
3,087,525	-				+0.6
3,087,525	-				+1.8
3,087,525	-				+1.6
3,087,525	-				+1.0
3,087,525	-				+2.2
3,087,525	-				+0.2
3,087,525	-				+1.5
3,087,539	+				+1.7
3,087,540	-				+0.8
3,087,550	+				+2.2
3,087,551	-				+1.1
3,087,551	-				+0.9
3,087,581	+				+1.7
3,087,581	+				+1.2
3,087,582	-				+1.9
3,087,592	-				+0.5
3,087,592	-				+1.2
3,087,595	-				-0.6
3,087,595	-				+1.2
3,087,691	+		IAI47_14640	0.36	-0.3
3,087,692	-		IAI47_14640	0.36	+1.3
3,087,781	+		IAI47_14640	0.69	+2.1
3,087,781	+		IAI47_14640	0.69	+0.0
3,087,782	-		IAI47_14640	0.69	+1.3
3,087,782	-		IAI47_14640	0.69	+1.2
3,087,791	+		IAI47_14640	0.73	+1.1
3,087,791	+		IAI47_14640	0.73	+0.7
3,087,792	-		IAI47_14640	0.73	+1.5
3,087,792	-		IAI47_14640	0.73	+1.8
3,087,814	+		IAI47_14640	0.81	+1.1
3,087,814	+		IAI47_14640	0.81	-0.0
3,087,814	+		IAI47_14640	0.81	+0.6
3,087,820	+		IAI47_14640	0.83	+1.2
3,087,820	+		IAI47_14640	0.83	+1.1
3,087,821	-		IAI47_14640	0.84	+1.2
3,087,859	+				+0.9
3,087,859	+				+1.4
3,087,859	+				+0.5
3,087,859	+				+1.0
3,087,859	+				+1.7
3,087,860	-				+1.0
3,087,860	-				+2.5
3,087,868	+				+1.2
3,087,868	+				+1.3
3,087,868	+				+2.3
3,087,868	+				+1.4
3,087,868	+				+2.2
3,087,868	+				+1.2
3,087,869	-				-0.6
3,087,869	-				+1.8
3,087,869	-				+0.1
3,087,869	-				+1.3
3,087,869	-				+2.8
3,087,884	+				-0.1
3,087,884	+				+1.8
3,087,884	+				+1.2
3,087,885	-				+2.5
3,087,887	+				+1.7
3,087,888	-				+2.3
3,087,888	-				+1.0
3,087,936	+				+1.9
3,087,936	+				+1.4
3,087,936	+				+1.4
3,087,936	+				+0.9
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3,087,938	+				+1.4
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3,087,965	+				+1.8
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