Strain Fitness in Pantoea sp. MT58 around IAI47_13635

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
2,891,309	+		IAI47_13625	0.79	+0.3
2,891,345	+		IAI47_13625	0.82	-1.2
2,891,345	+		IAI47_13625	0.82	+0.9
2,891,346	-		IAI47_13625	0.82	+0.2
2,891,346	-		IAI47_13625	0.82	+1.2
2,891,346	-		IAI47_13625	0.82	+0.9
2,891,360	+		IAI47_13625	0.84	+0.8
2,891,361	-		IAI47_13625	0.84	+1.0
2,891,361	-		IAI47_13625	0.84	-0.7
2,891,361	-		IAI47_13625	0.84	-0.8
2,891,361	-		IAI47_13625	0.84	+0.8
2,891,361	-		IAI47_13625	0.84	-0.2
2,891,361	-		IAI47_13625	0.84	+0.9
2,891,393	+		IAI47_13625	0.87	+0.6
2,891,394	-		IAI47_13625	0.87	+0.8
2,891,565	+				+1.2
2,891,565	+				-0.1
2,891,565	+				+1.2
2,891,565	+				-0.2
2,891,565	+				-0.6
2,891,565	+				+0.0
2,891,565	+				-1.1
2,891,565	+				+0.2
2,891,566	-				-1.6
2,891,566	-				+0.8
2,891,566	-				-0.6
2,891,566	-				-0.0
2,891,566	-				-0.1
2,891,566	-				+0.1
2,891,566	-				-1.1
2,891,566	-				+0.8
2,891,566	-				-0.7
2,891,566	-				+0.3
2,891,603	+		IAI47_13630	0.13	+0.4
2,891,604	-		IAI47_13630	0.13	+0.2
2,891,604	-		IAI47_13630	0.13	-0.1
2,891,621	+		IAI47_13630	0.15	+1.2
2,891,621	+		IAI47_13630	0.15	-1.0
2,891,621	+		IAI47_13630	0.15	-1.6
2,891,621	+		IAI47_13630	0.15	-0.1
2,891,622	-		IAI47_13630	0.15	-0.1
2,891,622	-		IAI47_13630	0.15	-1.3
2,891,622	-		IAI47_13630	0.15	-0.3
2,891,622	-		IAI47_13630	0.15	-0.1
2,891,622	-		IAI47_13630	0.15	-1.0
2,891,653	-		IAI47_13630	0.20	+0.4
2,891,693	+		IAI47_13630	0.25	-0.2
2,891,693	+		IAI47_13630	0.25	+0.2
2,891,693	+		IAI47_13630	0.25	-0.5
2,891,693	+		IAI47_13630	0.25	+0.8
2,891,693	+		IAI47_13630	0.25	+0.6
2,891,693	+		IAI47_13630	0.25	+0.2
2,891,694	-		IAI47_13630	0.25	-0.9
2,891,724	+		IAI47_13630	0.29	-0.6
2,891,724	+		IAI47_13630	0.29	-0.1
2,891,724	+		IAI47_13630	0.29	-0.2
2,891,724	+		IAI47_13630	0.29	-1.1
2,891,724	+		IAI47_13630	0.29	-0.2
2,891,834	-		IAI47_13630	0.45	+0.9
2,891,856	+		IAI47_13630	0.48	+0.6
2,891,857	-		IAI47_13630	0.48	+0.6
2,891,858	+		IAI47_13630	0.48	+0.3
2,891,858	+		IAI47_13630	0.48	+0.2
2,891,858	+		IAI47_13630	0.48	-1.8
2,891,858	+		IAI47_13630	0.48	-0.8
2,891,858	+		IAI47_13630	0.48	-1.0
2,891,858	+		IAI47_13630	0.48	-1.0
2,891,858	+		IAI47_13630	0.48	+0.9
2,891,858	+		IAI47_13630	0.48	-2.8
2,891,859	-		IAI47_13630	0.48	+3.6
2,891,859	-		IAI47_13630	0.48	+1.2
2,891,859	-		IAI47_13630	0.48	+0.3
2,891,859	-		IAI47_13630	0.48	-0.3
2,891,859	-		IAI47_13630	0.48	-0.1
2,891,859	-		IAI47_13630	0.48	+0.6
2,891,859	-		IAI47_13630	0.48	+1.5
2,891,859	-		IAI47_13630	0.48	+0.7
2,891,859	-		IAI47_13630	0.48	+0.6
2,891,859	-		IAI47_13630	0.48	+0.2
2,891,978	+		IAI47_13630	0.64	-0.2
2,891,988	-		IAI47_13630	0.66	-0.6
2,892,032	+		IAI47_13630	0.72	-0.4
2,892,032	+		IAI47_13630	0.72	+0.9
2,892,032	+		IAI47_13630	0.72	-0.7
2,892,033	-		IAI47_13630	0.72	-0.8
2,892,075	+		IAI47_13630	0.78	+1.2
2,892,092	+		IAI47_13630	0.80	+0.7
2,892,092	+		IAI47_13630	0.80	-1.0
2,892,126	+		IAI47_13630	0.85	+0.2
2,892,126	+		IAI47_13630	0.85	-0.4
2,892,126	+		IAI47_13630	0.85	-0.6
2,892,126	+		IAI47_13630	0.85	+0.6
2,892,126	+		IAI47_13630	0.85	+0.9
2,892,126	+		IAI47_13630	0.85	-0.3
2,892,126	+		IAI47_13630	0.85	-0.2
2,892,127	-		IAI47_13630	0.85	-1.0
2,892,127	-		IAI47_13630	0.85	+0.8
2,892,127	-		IAI47_13630	0.85	-0.5
2,892,127	-		IAI47_13630	0.85	-0.0
2,892,133	+		IAI47_13630	0.86	-0.1
2,892,133	+		IAI47_13630	0.86	+1.3
2,892,133	+		IAI47_13630	0.86	+0.7
2,892,134	-		IAI47_13630	0.86	-0.3
2,892,134	-		IAI47_13630	0.86	+0.6
2,892,176	+				-0.4
2,892,198	+				-0.4
2,892,198	+				-0.5
2,892,199	-				-1.4
2,892,199	-				-0.1
2,892,199	-				+0.4
2,892,210	+				+0.4
2,892,211	-				-0.7
2,892,211	-				-0.1
2,892,213	+				-0.4
2,892,213	+				+0.5
2,892,213	+				+1.8
2,892,213	+				-0.2
2,892,213	+				-0.4
2,892,213	+				-0.0
2,892,213	+				+0.4
2,892,214	-				-0.0
2,892,214	-				+0.3
2,892,214	-				-0.4
2,892,214	-				+0.4
2,892,214	-				+0.8
2,892,214	-				-0.7
2,892,214	-				-1.5
2,892,259	+				-0.9
2,892,285	-				+1.0
2,892,303	+				-0.8
2,892,303	+				-1.0
2,892,303	+				-0.8
2,892,303	+				-0.8
2,892,304	-				-0.3
2,892,304	-				+0.2
2,892,304	-				-0.4
2,892,315	-				-1.0
2,892,404	+		IAI47_13635	0.14	-0.1
2,892,405	-		IAI47_13635	0.14	-1.1
2,892,405	-		IAI47_13635	0.14	-0.8
2,892,668	-		IAI47_13635	0.39	-2.8
2,892,668	-		IAI47_13635	0.39	-0.4
2,892,769	+		IAI47_13635	0.48	+1.8
2,892,841	-		IAI47_13635	0.55	-1.2
2,892,848	+		IAI47_13635	0.56	-0.8
2,892,848	+		IAI47_13635	0.56	-1.8
2,892,848	+		IAI47_13635	0.56	+0.1
2,892,849	-		IAI47_13635	0.56	-0.5
2,892,849	-		IAI47_13635	0.56	-0.9
2,892,896	+		IAI47_13635	0.60	-1.8
2,892,896	+		IAI47_13635	0.60	-2.1
2,892,897	-		IAI47_13635	0.60	-1.9
2,892,897	-		IAI47_13635	0.60	-0.8
2,892,897	-		IAI47_13635	0.60	-2.2
2,892,897	-		IAI47_13635	0.60	+0.8
2,892,904	+		IAI47_13635	0.61	+0.5
2,892,904	+		IAI47_13635	0.61	+0.2
2,892,904	+		IAI47_13635	0.61	-1.0
2,892,904	+		IAI47_13635	0.61	-2.0
2,892,905	-		IAI47_13635	0.61	-0.0
2,892,905	-		IAI47_13635	0.61	-1.8
2,892,905	-		IAI47_13635	0.61	-0.8
2,892,905	-		IAI47_13635	0.61	-2.1
2,892,947	+		IAI47_13635	0.65	-0.5
2,892,948	-		IAI47_13635	0.65	-1.6
2,893,050	-		IAI47_13635	0.75	-1.6
2,893,050	-		IAI47_13635	0.75	-0.8
2,893,056	+		IAI47_13635	0.75	-0.6
2,893,056	+		IAI47_13635	0.75	-0.6
2,893,056	+		IAI47_13635	0.75	-0.6
2,893,056	+		IAI47_13635	0.75	-1.6
2,893,057	-		IAI47_13635	0.75	-1.8
2,893,174	+		IAI47_13635	0.86	-0.4
2,893,174	+		IAI47_13635	0.86	-2.1
2,893,175	-		IAI47_13635	0.86	-1.2
2,893,175	-		IAI47_13635	0.86	+0.2
2,893,175	-		IAI47_13635	0.86	-0.4
2,893,175	-		IAI47_13635	0.86	-0.6
2,893,175	-		IAI47_13635	0.86	-0.7
2,893,177	+		IAI47_13635	0.87	-1.4
2,893,177	+		IAI47_13635	0.87	-1.4
2,893,177	+		IAI47_13635	0.87	-1.5
2,893,177	+		IAI47_13635	0.87	-0.8
2,893,178	-		IAI47_13635	0.87	-1.9
2,893,178	-		IAI47_13635	0.87	-2.6
2,893,234	+				-0.1
2,893,286	-				-0.8
2,893,286	-				+0.8
2,893,312	-				-1.7
2,893,312	-				-1.4
2,893,401	-				+0.6
2,893,628	+		IAI47_13640	0.34	+1.1
2,893,696	+		IAI47_13640	0.46	-0.6
2,893,810	+		IAI47_13640	0.67	+0.2
2,893,810	+		IAI47_13640	0.67	-0.8
2,893,810	+		IAI47_13640	0.67	+0.3
2,893,810	+		IAI47_13640	0.67	-0.1
2,893,810	+		IAI47_13640	0.67	+0.2
2,893,811	-		IAI47_13640	0.67	+0.7
2,893,811	-		IAI47_13640	0.67	+1.8
2,893,811	-		IAI47_13640	0.67	+0.0
2,893,964	+				-0.7
2,893,965	-				+1.2
2,893,965	-				+1.4
2,893,965	-				-0.4
2,893,965	-				-0.4
2,893,968	+				-0.2
2,893,968	+				+0.4
2,893,968	+				+1.3
2,893,968	+				-0.2
2,893,968	+				+0.8
2,893,968	+				-1.4
2,893,968	+				+1.2
2,893,968	+				-0.2
2,893,968	+				+0.4
2,893,969	-				-0.4
2,893,969	-				-0.8
2,893,969	-				-1.6
2,893,969	-				-0.8
2,893,969	-				+0.6
2,893,969	-				+0.2
2,893,969	-				+0.9
2,893,981	+				-0.2
2,893,981	+				-1.0
2,893,981	+				+0.2
2,893,982	-				+0.8
2,893,982	-				+0.2
2,893,982	-				+0.8
2,893,982	-				-0.1
2,893,982	-				-0.4
2,893,982	-				-1.1
2,893,984	+				-0.3
2,893,984	+				-0.4
2,893,984	+				+0.3
2,893,984	+				-1.6
2,893,984	+				+0.4
2,893,984	+				-0.3
2,893,984	+				-0.8
2,893,984	+				-0.9
2,893,984	+				-0.6
2,893,984	+				+0.2
2,893,985	-				+1.2
2,893,985	-				+1.3
2,893,985	-				-0.8
2,893,985	-				+0.2
2,893,985	-				-0.1
2,893,991	+				-0.4
2,893,991	+				-0.2
2,893,991	+				-0.4
2,893,991	+				-0.1
2,893,992	-				+0.8
2,893,992	-				+0.2
2,893,992	-				+0.9
2,894,065	+				+1.9
2,894,065	+				+0.4
2,894,065	+				-1.8
2,894,065	+				-1.8
2,894,065	+				-0.1
2,894,067	+				+0.6
2,894,067	+				-0.5
2,894,068	-				-1.3
2,894,117	+				-0.6
2,894,117	+				+0.2
2,894,117	+				+1.6
2,894,117	+				+1.9
2,894,118	-				+0.4
2,894,128	+				+0.2
2,894,128	+				+1.5
2,894,129	-				-1.4
2,894,129	-				-0.2
2,894,129	-				-0.1
2,894,132	+				+0.5
2,894,169	-				-0.6
2,894,236	+				-0.0
2,894,240	+				-0.4
2,894,240	+				-1.4
2,894,240	+				+0.2
2,894,240	+				+2.5
2,894,240	+				+0.9
2,894,240	+				+0.3
2,894,240	+				+0.2
2,894,240	+				+0.2
2,894,240	+				+0.1
2,894,240	+				+0.2
2,894,241	-				+0.4
2,894,241	-				-0.3
2,894,241	-				-2.5
2,894,241	-				-0.4
2,894,241	-				+0.3
2,894,241	-				-0.2
2,894,241	-				+1.2
2,894,241	-				+1.2
2,894,241	-				-0.6
2,894,241	-				-0.1
2,894,241	-				-0.7
2,894,241	-				+0.6
2,894,241	-				-0.4
2,894,241	-				+0.2
2,894,241	-				+0.5
2,894,241	-				-0.2