Strain Fitness in Pantoea sp. MT58 around IAI47_13590

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
2,880,966	+				-0.2
2,881,027	+		IAI47_13585	0.12	-1.2
2,881,028	-		IAI47_13585	0.12	-0.8
2,881,032	+		IAI47_13585	0.13	+0.8
2,881,090	+		IAI47_13585	0.18	+1.2
2,881,103	+		IAI47_13585	0.19	-0.2
2,881,103	+		IAI47_13585	0.19	-0.9
2,881,103	+		IAI47_13585	0.19	+0.2
2,881,103	+		IAI47_13585	0.19	+0.8
2,881,115	+		IAI47_13585	0.21	+0.3
2,881,115	+		IAI47_13585	0.21	-1.4
2,881,115	+		IAI47_13585	0.21	-0.6
2,881,115	+		IAI47_13585	0.21	-1.4
2,881,115	+		IAI47_13585	0.21	-0.2
2,881,115	+		IAI47_13585	0.21	-1.8
2,881,115	+		IAI47_13585	0.21	-0.4
2,881,116	-		IAI47_13585	0.21	+0.6
2,881,116	-		IAI47_13585	0.21	-1.8
2,881,116	-		IAI47_13585	0.21	+0.2
2,881,116	-		IAI47_13585	0.21	-0.8
2,881,123	+		IAI47_13585	0.21	+3.5
2,881,124	-		IAI47_13585	0.21	-0.8
2,881,124	-		IAI47_13585	0.21	+0.6
2,881,124	-		IAI47_13585	0.21	+0.2
2,881,124	-		IAI47_13585	0.21	-0.1
2,881,124	-		IAI47_13585	0.21	+0.9
2,881,124	-		IAI47_13585	0.21	+0.5
2,881,246	+		IAI47_13585	0.33	-1.1
2,881,246	+		IAI47_13585	0.33	+1.2
2,881,247	-		IAI47_13585	0.33	+0.2
2,881,331	+		IAI47_13585	0.41	-1.4
2,881,332	-		IAI47_13585	0.41	-1.4
2,881,463	+		IAI47_13585	0.54	-0.2
2,881,463	+		IAI47_13585	0.54	-0.8
2,881,464	-		IAI47_13585	0.54	-0.0
2,881,471	+		IAI47_13585	0.55	-0.3
2,881,499	+		IAI47_13585	0.57	-0.8
2,881,500	-		IAI47_13585	0.57	-0.8
2,881,500	-		IAI47_13585	0.57	-0.3
2,881,621	+		IAI47_13585	0.69	-2.1
2,881,621	+		IAI47_13585	0.69	-0.8
2,881,621	+		IAI47_13585	0.69	-1.1
2,881,622	-		IAI47_13585	0.69	+0.5
2,881,676	-		IAI47_13585	0.74	-1.8
2,881,724	+		IAI47_13585	0.79	-0.8
2,881,724	+		IAI47_13585	0.79	-0.8
2,881,725	-		IAI47_13585	0.79	-0.7
2,881,796	+		IAI47_13585	0.86	-0.2
2,881,796	+		IAI47_13585	0.86	+0.2
2,881,797	-		IAI47_13585	0.86	+0.2
2,881,797	-		IAI47_13585	0.86	+1.2
2,881,844	+				-0.6
2,881,845	-				+0.2
2,881,875	+				+1.8
2,881,875	+				+0.2
2,881,949	+				-0.4
2,881,949	+				-0.4
2,881,950	-				-1.0
2,881,950	-				+1.0
2,881,950	-				+0.2
2,882,004	+				-0.2
2,882,004	+				+0.2
2,882,004	+				-0.3
2,882,004	+				-0.6
2,882,004	+				-0.1
2,882,005	-				-0.2
2,882,029	-				+0.3
2,882,053	+				+1.2
2,882,053	+				+2.2
2,882,053	+				+0.2
2,882,054	-				+2.0
2,882,054	-				-0.5
2,882,055	+				-2.0
2,882,056	-				-0.3
2,882,152	+		IAI47_13590	0.18	+3.0
2,882,153	-		IAI47_13590	0.18	+1.5
2,882,153	-		IAI47_13590	0.18	+0.4
2,882,224	+		IAI47_13590	0.25	+0.2
2,882,224	+		IAI47_13590	0.25	+0.2
2,882,224	+		IAI47_13590	0.25	-1.1
2,882,224	+		IAI47_13590	0.25	+0.2
2,882,224	+		IAI47_13590	0.25	+1.2
2,882,224	+		IAI47_13590	0.25	+0.4
2,882,224	+		IAI47_13590	0.25	-0.7
2,882,224	+		IAI47_13590	0.25	+0.2
2,882,224	+		IAI47_13590	0.25	+0.1
2,882,224	+		IAI47_13590	0.25	+0.1
2,882,225	-		IAI47_13590	0.25	-0.2
2,882,225	-		IAI47_13590	0.25	+0.7
2,882,225	-		IAI47_13590	0.25	-1.8
2,882,225	-		IAI47_13590	0.25	+0.6
2,882,225	-		IAI47_13590	0.25	+0.9
2,882,225	-		IAI47_13590	0.25	+0.2
2,882,225	-		IAI47_13590	0.25	-0.4
2,882,225	-		IAI47_13590	0.25	-0.3
2,882,225	-		IAI47_13590	0.25	+0.4
2,882,225	-		IAI47_13590	0.25	+1.0
2,882,225	-		IAI47_13590	0.25	+2.8
2,882,225	-		IAI47_13590	0.25	+2.5
2,882,374	+		IAI47_13590	0.38	-0.7
2,882,374	+		IAI47_13590	0.38	+1.2
2,882,374	+		IAI47_13590	0.38	+0.4
2,882,375	-		IAI47_13590	0.38	+0.9
2,882,375	-		IAI47_13590	0.38	+0.6
2,882,375	-		IAI47_13590	0.38	-0.8
2,882,375	-		IAI47_13590	0.38	+0.2
2,882,375	-		IAI47_13590	0.38	-1.1
2,882,376	+		IAI47_13590	0.38	-0.1
2,882,376	+		IAI47_13590	0.38	+2.6
2,882,376	+		IAI47_13590	0.38	+1.1
2,882,377	-		IAI47_13590	0.38	+0.3
2,882,499	+		IAI47_13590	0.48	+1.2
2,882,499	+		IAI47_13590	0.48	-1.4
2,882,499	+		IAI47_13590	0.48	+2.8
2,882,499	+		IAI47_13590	0.48	-0.2
2,882,499	+		IAI47_13590	0.48	-0.2
2,882,500	-		IAI47_13590	0.49	-0.8
2,882,500	-		IAI47_13590	0.49	-0.8
2,882,500	-		IAI47_13590	0.49	+0.7
2,882,500	-		IAI47_13590	0.49	-0.8
2,882,500	-		IAI47_13590	0.49	-0.2
2,882,553	+		IAI47_13590	0.53	-1.1
2,882,553	+		IAI47_13590	0.53	-0.1
2,882,608	+		IAI47_13590	0.58	-0.9
2,882,609	-		IAI47_13590	0.58	+0.6
2,882,609	-		IAI47_13590	0.58	-1.3
2,882,609	-		IAI47_13590	0.58	-1.1
2,882,655	+		IAI47_13590	0.62	-1.9
2,882,655	+		IAI47_13590	0.62	+0.7
2,882,763	+		IAI47_13590	0.71	+0.2
2,882,880	+		IAI47_13590	0.82	+0.9
2,882,881	-		IAI47_13590	0.82	-0.8
2,882,932	-		IAI47_13590	0.86	+0.4
2,882,932	-		IAI47_13590	0.86	+0.2
2,882,932	-		IAI47_13590	0.86	-0.1
2,882,998	-				-0.5
2,883,019	+				-1.4
2,883,019	+				+1.8
2,883,019	+				-0.0
2,883,019	+				-0.8
2,883,019	+				-0.5
2,883,020	-				+0.8
2,883,020	-				+0.3
2,883,020	-				-0.8
2,883,052	+				+1.2
2,883,052	+				-1.0
2,883,052	+				-0.5
2,883,052	+				+0.3
2,883,052	+				+0.2
2,883,052	+				-0.4
2,883,052	+				-0.5
2,883,052	+				+2.2
2,883,052	+				+1.2
2,883,053	-				+0.6
2,883,053	-				-0.6
2,883,053	-				-0.3
2,883,053	-				+1.3
2,883,053	-				+1.2
2,883,053	-				+2.8
2,883,053	-				+2.8
2,883,053	-				+0.2
2,883,053	-				+0.4
2,883,053	-				-0.0
2,883,053	-				-1.4
2,883,053	-				-0.0
2,883,053	-				-0.5
2,883,053	-				+1.2
2,883,053	-				-1.0
2,883,053	-				+1.0
2,883,053	-				+1.0
2,883,055	-				+0.6
2,883,060	+				-1.1
2,883,061	-				-0.3
2,883,061	-				-1.4
2,883,061	-				-0.2
2,883,173	+				+0.2
2,883,174	-				+0.2
2,883,174	-				+0.6
2,883,208	+		IAI47_13595	0.12	-1.8
2,883,267	+		IAI47_13595	0.18	+1.2
2,883,267	+		IAI47_13595	0.18	+0.6
2,883,285	+		IAI47_13595	0.19	+0.2
2,883,286	-		IAI47_13595	0.20	-0.4
2,883,310	-		IAI47_13595	0.22	-0.0
2,883,310	-		IAI47_13595	0.22	+0.2
2,883,310	-		IAI47_13595	0.22	+0.5
2,883,342	-		IAI47_13595	0.25	-1.7
2,883,348	-		IAI47_13595	0.26	-0.7
2,883,365	+		IAI47_13595	0.27	-0.8
2,883,376	+		IAI47_13595	0.28	-0.1
2,883,376	+		IAI47_13595	0.28	+1.3
2,883,377	-		IAI47_13595	0.28	-0.6
2,883,377	-		IAI47_13595	0.28	+0.2
2,883,377	-		IAI47_13595	0.28	+0.5
2,883,377	-		IAI47_13595	0.28	+0.8
2,883,377	-		IAI47_13595	0.28	+1.2
2,883,519	+		IAI47_13595	0.42	-2.7
2,883,520	-		IAI47_13595	0.42	-0.3
2,883,555	+		IAI47_13595	0.46	-1.3
2,883,555	+		IAI47_13595	0.46	-1.0
2,883,556	-		IAI47_13595	0.46	-1.2
2,883,556	-		IAI47_13595	0.46	+1.2
2,883,606	+		IAI47_13595	0.50	+0.9
2,883,606	+		IAI47_13595	0.50	+0.2
2,883,606	+		IAI47_13595	0.50	+0.5
2,883,606	+		IAI47_13595	0.50	-0.2
2,883,606	+		IAI47_13595	0.50	-1.1
2,883,606	+		IAI47_13595	0.50	+0.2
2,883,607	-		IAI47_13595	0.51	+1.8
2,883,607	-		IAI47_13595	0.51	-1.0
2,883,607	-		IAI47_13595	0.51	+0.8
2,883,611	+		IAI47_13595	0.51	+0.2
2,883,612	-		IAI47_13595	0.51	-0.3
2,883,652	+		IAI47_13595	0.55	+0.5
2,883,652	+		IAI47_13595	0.55	-1.6
2,883,652	+		IAI47_13595	0.55	+0.5
2,883,653	-		IAI47_13595	0.55	-0.7
2,883,653	-		IAI47_13595	0.55	-0.3
2,883,653	-		IAI47_13595	0.55	+0.9
2,883,672	+		IAI47_13595	0.57	-0.3
2,883,672	+		IAI47_13595	0.57	-1.2
2,883,672	+		IAI47_13595	0.57	+0.3
2,883,672	+		IAI47_13595	0.57	-1.6
2,883,672	+		IAI47_13595	0.57	+0.2
2,883,673	-		IAI47_13595	0.57	-0.1
2,883,673	-		IAI47_13595	0.57	+0.8
2,883,676	+		IAI47_13595	0.57	-0.8
2,883,676	+		IAI47_13595	0.57	-0.8
2,883,677	-		IAI47_13595	0.57	-0.1
2,883,713	-		IAI47_13595	0.61	-1.2
2,883,753	-		IAI47_13595	0.65	+1.1
2,883,753	-		IAI47_13595	0.65	-0.3
2,883,800	-		IAI47_13595	0.69	+0.4
2,883,807	+		IAI47_13595	0.70	-0.4
2,883,807	+		IAI47_13595	0.70	-1.8
2,883,808	-		IAI47_13595	0.70	-1.4
2,883,808	-		IAI47_13595	0.70	-1.1
2,883,902	+		IAI47_13595	0.79	-0.4
2,883,902	+		IAI47_13595	0.79	+2.2
2,883,903	-		IAI47_13595	0.79	-0.0
2,883,903	-		IAI47_13595	0.79	-2.1
2,883,903	-		IAI47_13595	0.79	+0.6
2,883,927	+		IAI47_13595	0.81	-0.5
2,883,927	+		IAI47_13595	0.81	+2.5
2,883,927	+		IAI47_13595	0.81	-0.3
2,883,927	+		IAI47_13595	0.81	-1.3
2,883,939	+		IAI47_13595	0.83	+1.2
2,883,939	+		IAI47_13595	0.83	+0.1
2,883,939	+		IAI47_13595	0.83	-0.3
2,883,939	+		IAI47_13595	0.83	+0.6
2,883,940	-		IAI47_13595	0.83	+0.2
2,883,940	-		IAI47_13595	0.83	+0.4
2,883,940	-		IAI47_13595	0.83	+0.9
2,883,940	-		IAI47_13595	0.83	+0.1
2,883,975	+		IAI47_13595	0.86	+2.0
2,883,975	+		IAI47_13595	0.86	-0.4
2,883,975	+		IAI47_13595	0.86	+1.2
2,883,975	+		IAI47_13595	0.86	-2.6
2,883,975	+		IAI47_13595	0.86	+0.4
2,883,975	+		IAI47_13595	0.86	-0.8
2,883,975	+		IAI47_13595	0.86	+1.6
2,883,975	+		IAI47_13595	0.86	-1.8
2,883,975	+		IAI47_13595	0.86	-0.3
2,883,975	+		IAI47_13595	0.86	-0.1
2,883,976	-		IAI47_13595	0.86	+0.2
2,883,976	-		IAI47_13595	0.86	-0.4
2,883,976	-		IAI47_13595	0.86	+0.4
2,883,976	-		IAI47_13595	0.86	+2.6
2,883,976	-		IAI47_13595	0.86	-0.1
2,883,976	-		IAI47_13595	0.86	-0.9
2,883,976	-		IAI47_13595	0.86	-1.1
2,883,977	+		IAI47_13595	0.86	-0.3
2,883,977	+		IAI47_13595	0.86	+0.1
2,883,977	+		IAI47_13595	0.86	+0.4
2,883,977	+		IAI47_13595	0.86	+1.1
2,883,978	-		IAI47_13595	0.86	+0.2
2,883,978	-		IAI47_13595	0.86	+1.0
2,883,978	-		IAI47_13595	0.86	-0.4
2,883,978	-		IAI47_13595	0.86	-1.4