Strain Fitness in Pantoea sp. MT58 around IAI47_13550

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
2,873,677	+		IAI47_13545	0.27	-0.8
2,873,708	+		IAI47_13545	0.30	-0.8
2,873,750	+		IAI47_13545	0.34	+0.5
2,873,750	+		IAI47_13545	0.34	+0.7
2,873,751	-		IAI47_13545	0.34	+0.5
2,873,751	-		IAI47_13545	0.34	-2.4
2,873,751	-		IAI47_13545	0.34	-0.8
2,873,789	+		IAI47_13545	0.38	+0.2
2,873,790	-		IAI47_13545	0.38	+0.5
2,873,793	+		IAI47_13545	0.39	-0.6
2,873,794	-		IAI47_13545	0.39	-0.0
2,873,794	-		IAI47_13545	0.39	-0.4
2,873,794	-		IAI47_13545	0.39	+0.3
2,873,794	-		IAI47_13545	0.39	+0.1
2,873,794	-		IAI47_13545	0.39	+0.5
2,873,830	-		IAI47_13545	0.42	-1.0
2,873,837	-		IAI47_13545	0.43	-1.0
2,873,889	+		IAI47_13545	0.48	-0.2
2,873,889	+		IAI47_13545	0.48	-0.8
2,873,889	+		IAI47_13545	0.48	-0.6
2,873,889	+		IAI47_13545	0.48	+0.2
2,873,889	+		IAI47_13545	0.48	-0.9
2,873,890	-		IAI47_13545	0.48	-0.8
2,873,890	-		IAI47_13545	0.48	-1.1
2,873,890	-		IAI47_13545	0.48	+1.2
2,873,890	-		IAI47_13545	0.48	-0.7
2,873,912	+		IAI47_13545	0.50	-1.0
2,873,913	-		IAI47_13545	0.51	-1.9
2,873,957	+		IAI47_13545	0.55	+0.8
2,873,957	+		IAI47_13545	0.55	-1.0
2,873,957	+		IAI47_13545	0.55	-1.4
2,873,957	+		IAI47_13545	0.55	-0.6
2,873,958	-		IAI47_13545	0.55	-0.7
2,873,958	-		IAI47_13545	0.55	-0.2
2,873,979	+		IAI47_13545	0.57	+0.3
2,873,979	+		IAI47_13545	0.57	-0.5
2,873,980	-		IAI47_13545	0.57	-0.4
2,873,983	+		IAI47_13545	0.58	-0.0
2,873,983	+		IAI47_13545	0.58	+0.2
2,873,983	+		IAI47_13545	0.58	-1.8
2,873,983	+		IAI47_13545	0.58	+0.2
2,873,983	+		IAI47_13545	0.58	-0.9
2,873,983	+		IAI47_13545	0.58	-0.8
2,873,983	+		IAI47_13545	0.58	-1.4
2,873,983	+		IAI47_13545	0.58	-0.3
2,873,983	+		IAI47_13545	0.58	-0.9
2,873,984	-		IAI47_13545	0.58	+0.4
2,873,984	-		IAI47_13545	0.58	-0.6
2,873,984	-		IAI47_13545	0.58	+0.2
2,873,984	-		IAI47_13545	0.58	-3.3
2,873,984	-		IAI47_13545	0.58	-1.4
2,873,984	-		IAI47_13545	0.58	-0.8
2,873,984	-		IAI47_13545	0.58	-1.4
2,873,984	-		IAI47_13545	0.58	-1.1
2,873,984	-		IAI47_13545	0.58	+0.2
2,873,984	-		IAI47_13545	0.58	+0.2
2,873,993	+		IAI47_13545	0.59	-0.4
2,873,993	+		IAI47_13545	0.59	-0.3
2,873,993	+		IAI47_13545	0.59	-1.8
2,873,993	+		IAI47_13545	0.59	+0.2
2,873,993	+		IAI47_13545	0.59	+0.5
2,873,994	-		IAI47_13545	0.59	+0.5
2,873,994	-		IAI47_13545	0.59	-0.6
2,873,994	-		IAI47_13545	0.59	-2.8
2,874,039	+		IAI47_13545	0.63	+0.2
2,874,040	-		IAI47_13545	0.63	-0.8
2,874,109	+		IAI47_13545	0.70	-0.5
2,874,109	+		IAI47_13545	0.70	+1.8
2,874,110	-		IAI47_13545	0.70	-0.5
2,874,110	-		IAI47_13545	0.70	-1.0
2,874,452	+				-1.0
2,874,452	+				+0.6
2,874,452	+				+0.0
2,874,453	-				+0.2
2,874,453	-				+0.7
2,874,463	-				+0.6
2,874,470	+				-0.4
2,874,471	-				+0.5
2,874,522	+				-1.0
2,874,522	+				-0.0
2,874,522	+				+0.2
2,874,523	-				-0.2
2,874,523	-				-2.1
2,874,561	+				+0.2
2,874,561	+				+0.2
2,874,562	-				+0.2
2,874,562	-				+0.7
2,874,562	-				+0.8
2,874,562	-				+1.6
2,874,569	+				-1.3
2,874,569	+				+0.9
2,874,569	+				+0.9
2,874,570	-				+1.8
2,874,570	-				+0.1
2,874,576	+				-0.5
2,874,576	+				-0.5
2,874,577	-				+1.6
2,874,648	+		IAI47_13550	0.10	-0.7
2,874,649	-		IAI47_13550	0.11	+1.8
2,874,649	-		IAI47_13550	0.11	+0.4
2,874,709	+		IAI47_13550	0.18	+1.5
2,874,710	-		IAI47_13550	0.18	+1.0
2,874,732	+		IAI47_13550	0.21	+0.4
2,874,733	-		IAI47_13550	0.21	-0.6
2,874,760	+		IAI47_13550	0.24	+1.0
2,874,760	+		IAI47_13550	0.24	+1.5
2,874,760	+		IAI47_13550	0.24	-1.8
2,874,761	-		IAI47_13550	0.24	+0.8
2,874,761	-		IAI47_13550	0.24	-0.6
2,874,761	-		IAI47_13550	0.24	+0.0
2,874,761	-		IAI47_13550	0.24	-0.8
2,874,761	-		IAI47_13550	0.24	-0.6
2,874,761	-		IAI47_13550	0.24	+0.8
2,874,761	-		IAI47_13550	0.24	-0.7
2,874,761	-		IAI47_13550	0.24	+0.5
2,874,766	+		IAI47_13550	0.25	+1.0
2,874,766	+		IAI47_13550	0.25	+0.8
2,874,766	+		IAI47_13550	0.25	+0.2
2,874,766	+		IAI47_13550	0.25	+0.0
2,874,766	+		IAI47_13550	0.25	+0.5
2,874,767	-		IAI47_13550	0.25	-0.8
2,874,767	-		IAI47_13550	0.25	-0.4
2,874,767	-		IAI47_13550	0.25	+0.5
2,874,770	+		IAI47_13550	0.25	-0.6
2,874,770	+		IAI47_13550	0.25	+1.0
2,874,770	+		IAI47_13550	0.25	+2.2
2,874,770	+		IAI47_13550	0.25	+0.1
2,874,770	+		IAI47_13550	0.25	-2.1
2,874,770	+		IAI47_13550	0.25	+1.0
2,874,770	+		IAI47_13550	0.25	+1.1
2,874,771	-		IAI47_13550	0.25	+1.4
2,874,771	-		IAI47_13550	0.25	-1.1
2,874,771	-		IAI47_13550	0.25	-0.2
2,874,771	-		IAI47_13550	0.25	+0.5
2,874,771	-		IAI47_13550	0.25	-2.1
2,874,776	+		IAI47_13550	0.26	-0.8
2,874,776	+		IAI47_13550	0.26	+0.0
2,874,776	+		IAI47_13550	0.26	-0.8
2,874,777	-		IAI47_13550	0.26	+2.8
2,874,777	-		IAI47_13550	0.26	+0.3
2,874,782	+		IAI47_13550	0.27	-0.6
2,874,782	+		IAI47_13550	0.27	-1.6
2,874,782	+		IAI47_13550	0.27	+1.2
2,874,783	-		IAI47_13550	0.27	+0.6
2,874,783	-		IAI47_13550	0.27	+0.2
2,874,783	-		IAI47_13550	0.27	-0.8
2,874,783	-		IAI47_13550	0.27	-1.2
2,874,865	+		IAI47_13550	0.37	+0.2
2,874,865	+		IAI47_13550	0.37	+0.5
2,874,866	-		IAI47_13550	0.37	+0.2
2,874,866	-		IAI47_13550	0.37	-0.2
2,874,866	-		IAI47_13550	0.37	-2.4
2,874,881	+		IAI47_13550	0.39	+0.8
2,874,881	+		IAI47_13550	0.39	-0.3
2,874,881	+		IAI47_13550	0.39	-0.3
2,874,881	+		IAI47_13550	0.39	-0.0
2,874,882	-		IAI47_13550	0.39	+0.9
2,874,882	-		IAI47_13550	0.39	+0.5
2,874,882	-		IAI47_13550	0.39	+0.5
2,874,882	-		IAI47_13550	0.39	+1.1
2,874,902	+		IAI47_13550	0.41	-0.1
2,874,903	-		IAI47_13550	0.42	-0.6
2,874,997	-		IAI47_13550	0.53	-0.1
2,874,997	-		IAI47_13550	0.53	-0.8
2,874,997	-		IAI47_13550	0.53	+0.2
2,875,157	-		IAI47_13550	0.73	-0.3
2,875,157	-		IAI47_13550	0.73	+0.8
2,875,231	+		IAI47_13550	0.82	+0.4
2,875,231	+		IAI47_13550	0.82	+0.2
2,875,231	+		IAI47_13550	0.82	-2.4
2,875,231	+		IAI47_13550	0.82	-1.4
2,875,232	-		IAI47_13550	0.82	+0.8
2,875,232	-		IAI47_13550	0.82	+0.2
2,875,235	+		IAI47_13550	0.82	+0.2
2,875,235	+		IAI47_13550	0.82	+1.2
2,875,235	+		IAI47_13550	0.82	+0.5
2,875,235	+		IAI47_13550	0.82	+0.5
2,875,235	+		IAI47_13550	0.82	-1.0
2,875,235	+		IAI47_13550	0.82	-0.2
2,875,235	+		IAI47_13550	0.82	+0.2
2,875,236	-		IAI47_13550	0.82	+1.4
2,875,236	-		IAI47_13550	0.82	-0.1
2,875,236	-		IAI47_13550	0.82	-0.2
2,875,236	-		IAI47_13550	0.82	-0.1
2,875,236	-		IAI47_13550	0.82	+0.2
2,875,236	-		IAI47_13550	0.82	-0.2
2,875,303	+				+0.2
2,875,304	-				+0.5
2,875,304	-				-0.7
2,875,370	+				-1.1
2,875,370	+				+0.2
2,875,371	-				+0.4
2,875,379	+				+1.4
2,875,379	+				+0.2
2,875,379	+				-0.3
2,875,379	+				+0.7
2,875,379	+				+0.7
2,875,379	+				+0.9
2,875,380	-				+1.5
2,875,380	-				+1.3
2,875,380	-				-0.1
2,875,380	-				-0.0
2,875,416	+				-0.8
2,875,416	+				+0.9
2,875,417	-				+0.2
2,875,417	-				-0.8
2,875,417	-				-0.4
2,875,417	-				-2.6
2,875,466	-				-0.2
2,875,466	-				-0.6
2,875,466	-				-1.0
2,875,489	+		IAI47_13555	0.10	-0.5
2,875,490	-		IAI47_13555	0.10	+0.1
2,875,490	-		IAI47_13555	0.10	+0.2
2,875,495	+		IAI47_13555	0.11	+0.2
2,875,495	+		IAI47_13555	0.11	-0.3
2,875,539	-		IAI47_13555	0.15	-2.1
2,875,539	-		IAI47_13555	0.15	-1.8
2,875,539	-		IAI47_13555	0.15	-1.5
2,875,539	-		IAI47_13555	0.15	+0.2
2,875,539	-		IAI47_13555	0.15	+0.0
2,875,625	-		IAI47_13555	0.23	-0.7
2,875,669	+		IAI47_13555	0.27	-0.2
2,875,669	+		IAI47_13555	0.27	+0.0
2,875,669	+		IAI47_13555	0.27	-1.6
2,875,669	+		IAI47_13555	0.27	+2.2
2,875,669	+		IAI47_13555	0.27	-0.1
2,875,669	+		IAI47_13555	0.27	+0.2
2,875,669	+		IAI47_13555	0.27	+0.2
2,875,669	+		IAI47_13555	0.27	+0.2
2,875,670	-		IAI47_13555	0.27	+1.8
2,875,670	-		IAI47_13555	0.27	-0.8
2,875,670	-		IAI47_13555	0.27	+2.2
2,875,670	-		IAI47_13555	0.27	-0.4
2,875,670	-		IAI47_13555	0.27	-1.1
2,875,670	-		IAI47_13555	0.27	-0.0
2,875,670	-		IAI47_13555	0.27	+0.8
2,875,670	-		IAI47_13555	0.27	-0.6
2,875,670	-		IAI47_13555	0.27	+1.3
2,875,670	-		IAI47_13555	0.27	-0.4
2,875,670	-		IAI47_13555	0.27	+0.3
2,875,670	-		IAI47_13555	0.27	+2.2
2,875,670	-		IAI47_13555	0.27	-0.3
2,875,739	+		IAI47_13555	0.34	+0.7
2,875,739	+		IAI47_13555	0.34	+0.2
2,875,740	-		IAI47_13555	0.34	+2.1
2,875,740	-		IAI47_13555	0.34	+0.2
2,875,740	-		IAI47_13555	0.34	-1.0
2,875,740	-		IAI47_13555	0.34	+0.2
2,875,758	-		IAI47_13555	0.36	+2.1
2,875,758	-		IAI47_13555	0.36	+0.2
2,875,758	-		IAI47_13555	0.36	-0.8
2,875,890	+		IAI47_13555	0.48	-0.1
2,875,890	+		IAI47_13555	0.48	-1.0
2,875,903	+		IAI47_13555	0.49	-0.9
2,875,904	-		IAI47_13555	0.49	+0.2
2,875,932	+		IAI47_13555	0.52	+0.6
2,875,932	+		IAI47_13555	0.52	+0.2
2,876,025	-		IAI47_13555	0.61	-1.4
2,876,140	+		IAI47_13555	0.72	-1.3
2,876,145	+		IAI47_13555	0.72	-0.6
2,876,145	+		IAI47_13555	0.72	-0.1
2,876,146	-		IAI47_13555	0.72	+1.5
2,876,146	-		IAI47_13555	0.72	+1.1
2,876,146	-		IAI47_13555	0.72	-0.1
2,876,146	-		IAI47_13555	0.72	-0.8
2,876,146	-		IAI47_13555	0.72	+0.4
2,876,169	+		IAI47_13555	0.74	+0.5
2,876,203	-		IAI47_13555	0.78	+1.8
2,876,269	+		IAI47_13555	0.84	-0.1
2,876,357	-				+0.5
2,876,357	-				+0.4