Strain Fitness in Pantoea sp. MT58 around IAI47_12885

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
2,720,846	+		IAI47_12880	0.64	+1.6
2,720,846	+		IAI47_12880	0.64	+1.2
2,720,846	+		IAI47_12880	0.64	-0.5
2,720,846	+		IAI47_12880	0.64	+0.2
2,720,846	+		IAI47_12880	0.64	-1.6
2,720,846	+		IAI47_12880	0.64	-0.4
2,720,847	-		IAI47_12880	0.64	-0.5
2,720,847	-		IAI47_12880	0.64	+2.0
2,720,873	+		IAI47_12880	0.66	+0.8
2,720,873	+		IAI47_12880	0.66	-0.0
2,720,874	-		IAI47_12880	0.66	+0.8
2,720,874	-		IAI47_12880	0.66	-0.7
2,720,884	+		IAI47_12880	0.66	-0.3
2,720,884	+		IAI47_12880	0.66	-0.1
2,720,885	-		IAI47_12880	0.66	+1.4
2,720,885	-		IAI47_12880	0.66	+0.2
2,720,885	-		IAI47_12880	0.66	+0.6
2,720,888	+		IAI47_12880	0.66	+0.7
2,720,888	+		IAI47_12880	0.66	-0.8
2,720,888	+		IAI47_12880	0.66	+1.0
2,720,888	+		IAI47_12880	0.66	-0.3
2,720,888	+		IAI47_12880	0.66	-0.7
2,720,888	+		IAI47_12880	0.66	+1.6
2,720,888	+		IAI47_12880	0.66	-1.2
2,720,888	+		IAI47_12880	0.66	+0.2
2,720,888	+		IAI47_12880	0.66	-0.6
2,720,889	-		IAI47_12880	0.66	+2.4
2,720,894	+		IAI47_12880	0.66	+0.2
2,720,894	+		IAI47_12880	0.66	+2.5
2,720,894	+		IAI47_12880	0.66	-1.3
2,720,894	+		IAI47_12880	0.66	+2.0
2,720,894	+		IAI47_12880	0.66	+1.6
2,720,895	-		IAI47_12880	0.67	-1.1
2,720,895	-		IAI47_12880	0.67	+0.2
2,720,895	-		IAI47_12880	0.67	-0.2
2,720,933	+		IAI47_12880	0.68	-0.3
2,720,995	+		IAI47_12880	0.71	+0.2
2,720,996	-		IAI47_12880	0.71	+0.5
2,721,000	-		IAI47_12880	0.71	+1.7
2,721,000	-		IAI47_12880	0.71	+2.2
2,721,158	+		IAI47_12880	0.78	+0.2
2,721,158	+		IAI47_12880	0.78	-0.4
2,721,158	+		IAI47_12880	0.78	-0.0
2,721,159	-		IAI47_12880	0.78	-0.5
2,721,159	-		IAI47_12880	0.78	+0.6
2,721,163	+		IAI47_12880	0.78	+0.4
2,721,163	+		IAI47_12880	0.78	+0.7
2,721,163	+		IAI47_12880	0.78	+0.2
2,721,164	-		IAI47_12880	0.78	+0.4
2,721,164	-		IAI47_12880	0.78	+0.2
2,721,212	+		IAI47_12880	0.80	+0.5
2,721,212	+		IAI47_12880	0.80	-0.0
2,721,212	+		IAI47_12880	0.80	+0.2
2,721,212	+		IAI47_12880	0.80	-0.2
2,721,212	+		IAI47_12880	0.80	+0.3
2,721,212	+		IAI47_12880	0.80	-0.2
2,721,212	+		IAI47_12880	0.80	-1.4
2,721,212	+		IAI47_12880	0.80	-0.0
2,721,213	-		IAI47_12880	0.80	-0.8
2,721,213	-		IAI47_12880	0.80	+1.3
2,721,213	-		IAI47_12880	0.80	-0.3
2,721,213	-		IAI47_12880	0.80	+0.2
2,721,213	-		IAI47_12880	0.80	-0.4
2,721,213	-		IAI47_12880	0.80	+1.7
2,721,217	+		IAI47_12880	0.81	-0.1
2,721,217	+		IAI47_12880	0.81	-0.1
2,721,218	-		IAI47_12880	0.81	+0.8
2,721,218	-		IAI47_12880	0.81	+0.2
2,721,218	-		IAI47_12880	0.81	-0.8
2,721,351	-		IAI47_12880	0.87	+1.2
2,721,351	-		IAI47_12880	0.87	+2.2
2,721,351	-		IAI47_12880	0.87	+0.2
2,721,351	-		IAI47_12880	0.87	+0.4
2,721,371	+		IAI47_12880	0.87	-0.4
2,721,371	+		IAI47_12880	0.87	+1.2
2,721,371	+		IAI47_12880	0.87	-0.3
2,721,371	+		IAI47_12880	0.87	-0.4
2,721,371	+		IAI47_12880	0.87	+0.5
2,721,372	-		IAI47_12880	0.87	+2.5
2,721,372	-		IAI47_12880	0.87	+1.4
2,721,372	-		IAI47_12880	0.87	-0.7
2,721,373	+		IAI47_12880	0.87	-0.4
2,721,374	-		IAI47_12880	0.88	-0.3
2,721,412	+		IAI47_12880	0.89	-1.4
2,721,412	+		IAI47_12880	0.89	+1.0
2,721,412	+		IAI47_12880	0.89	-0.1
2,721,412	+		IAI47_12880	0.89	+0.2
2,721,412	+		IAI47_12880	0.89	-0.3
2,721,412	+		IAI47_12880	0.89	+0.9
2,721,413	-		IAI47_12880	0.89	-0.0
2,721,413	-		IAI47_12880	0.89	-0.6
2,721,421	+		IAI47_12880	0.90	-0.4
2,721,421	+		IAI47_12880	0.90	+1.5
2,721,421	+		IAI47_12880	0.90	+0.7
2,721,422	-		IAI47_12880	0.90	-0.4
2,721,422	-		IAI47_12880	0.90	-0.2
2,721,422	-		IAI47_12880	0.90	-0.5
2,721,427	+		IAI47_12880	0.90	+0.6
2,721,452	+				+0.4
2,721,452	+				-0.0
2,721,452	+				+0.3
2,721,453	-				-2.0
2,721,493	+				+0.6
2,721,494	-				-0.3
2,721,494	-				-0.3
2,721,551	+				+0.2
2,721,552	-				-0.2
2,721,581	+				+1.2
2,721,595	+				-0.8
2,721,595	+				+0.2
2,721,596	-				+1.2
2,721,596	-				-1.4
2,721,607	+				-0.0
2,721,631	+				-1.4
2,721,637	+				+0.3
2,721,638	-				-1.2
2,721,638	-				+1.2
2,721,656	+				+1.2
2,721,656	+				-0.6
2,721,656	+				+0.7
2,721,656	+				+1.4
2,721,656	+				+0.3
2,721,656	+				+0.7
2,721,656	+				-0.6
2,721,657	-				+1.0
2,721,657	-				-0.4
2,721,657	-				+0.6
2,721,657	-				+0.3
2,721,676	-				-0.2
2,721,677	+				+2.2
2,721,677	+				-0.3
2,721,678	-				-2.0
2,721,678	-				-0.8
2,721,707	-				+0.2
2,721,732	+				+0.4
2,721,732	+				-0.3
2,721,805	+				+0.3
2,721,806	-				+1.0
2,721,806	-				-1.6
2,721,806	-				+0.3
2,721,832	+				-0.6
2,721,841	+				+0.7
2,721,930	-		IAI47_12885	0.14	+2.4
2,722,022	-		IAI47_12885	0.27	+0.5
2,722,022	-		IAI47_12885	0.27	+1.7
2,722,045	+		IAI47_12885	0.30	+0.7
2,722,045	+		IAI47_12885	0.30	+0.2
2,722,108	+		IAI47_12885	0.38	+0.6
2,722,108	+		IAI47_12885	0.38	-0.7
2,722,126	+		IAI47_12885	0.41	+2.2
2,722,126	+		IAI47_12885	0.41	+1.2
2,722,126	+		IAI47_12885	0.41	+0.6
2,722,126	+		IAI47_12885	0.41	-0.6
2,722,127	-		IAI47_12885	0.41	+1.9
2,722,127	-		IAI47_12885	0.41	-0.1
2,722,127	-		IAI47_12885	0.41	+0.3
2,722,127	-		IAI47_12885	0.41	-0.4
2,722,127	-		IAI47_12885	0.41	-0.1
2,722,192	+		IAI47_12885	0.50	+0.3
2,722,192	+		IAI47_12885	0.50	+1.2
2,722,200	+		IAI47_12885	0.51	+0.7
2,722,200	+		IAI47_12885	0.51	-0.4
2,722,201	-		IAI47_12885	0.51	+0.2
2,722,201	-		IAI47_12885	0.51	-0.8
2,722,201	-		IAI47_12885	0.51	-0.3
2,722,261	+		IAI47_12885	0.59	+0.2
2,722,262	-		IAI47_12885	0.59	-0.3
2,722,262	-		IAI47_12885	0.59	+2.0
2,722,289	+		IAI47_12885	0.63	-0.1
2,722,290	-		IAI47_12885	0.63	+1.6
2,722,393	+		IAI47_12885	0.77	-0.0
2,722,393	+		IAI47_12885	0.77	+0.1
2,722,393	+		IAI47_12885	0.77	+0.2
2,722,394	-		IAI47_12885	0.77	-2.0
2,722,394	-		IAI47_12885	0.77	-1.6
2,722,427	+		IAI47_12885	0.81	-0.3
2,722,428	-		IAI47_12885	0.82	-1.4
2,722,447	+		IAI47_12885	0.84	-0.3
2,722,447	+		IAI47_12885	0.84	-1.0
2,722,447	+		IAI47_12885	0.84	-0.6
2,722,448	-		IAI47_12885	0.84	-0.6
2,722,448	-		IAI47_12885	0.84	-0.0
2,722,448	-		IAI47_12885	0.84	-0.8
2,722,472	+		IAI47_12885	0.87	-0.6
2,722,472	+		IAI47_12885	0.87	+0.2
2,722,488	+		IAI47_12885	0.90	+0.2
2,722,488	+		IAI47_12885	0.90	+0.0
2,722,488	+		IAI47_12885	0.90	+0.4
2,722,488	+		IAI47_12885	0.90	+1.0
2,722,488	+		IAI47_12885	0.90	-1.7
2,722,559	+				-0.0
2,722,559	+				-1.2
2,722,559	+				+0.9
2,722,559	+				+0.8
2,722,559	+				-0.4
2,722,560	-				-0.7
2,722,560	-				-0.8
2,722,589	+				+0.6
2,722,589	+				-0.8
2,722,589	+				+1.0
2,722,589	+				-1.8
2,722,589	+				+0.9
2,722,590	-				+0.4
2,722,590	-				-1.2
2,722,590	-				+0.7
2,722,590	-				-0.0
2,722,590	-				-0.2
2,722,590	-				+0.6
2,722,590	-				-0.4
2,722,590	-				+1.7
2,722,666	+				-0.8
2,722,667	-				-2.0
2,722,667	-				-0.6
2,722,675	-				-0.0
2,722,709	+				-0.6
2,722,709	+				+0.5
2,722,709	+				-0.3
2,722,709	+				-1.6
2,722,709	+				-0.3
2,722,709	+				+1.4
2,722,709	+				+0.3
2,722,710	-				+0.6
2,722,710	-				+0.0
2,722,710	-				+0.7
2,722,722	+				-0.3
2,722,723	-				+1.2
2,722,770	-		IAI47_12890	0.13	+0.6
2,722,774	+		IAI47_12890	0.14	-1.3
2,722,775	-		IAI47_12890	0.14	+1.2
2,722,775	-		IAI47_12890	0.14	-0.4
2,722,775	-		IAI47_12890	0.14	+0.8
2,722,776	+		IAI47_12890	0.14	+1.5
2,722,776	+		IAI47_12890	0.14	-0.8
2,722,777	-		IAI47_12890	0.14	+0.2
2,722,777	-		IAI47_12890	0.14	+0.5
2,722,777	-		IAI47_12890	0.14	-2.7
2,722,858	-		IAI47_12890	0.21	-0.2
2,722,961	+		IAI47_12890	0.30	-0.4
2,722,961	+		IAI47_12890	0.30	+0.2
2,722,962	-		IAI47_12890	0.30	-1.3
2,723,021	-		IAI47_12890	0.35	+0.6
2,723,021	-		IAI47_12890	0.35	-0.7
2,723,088	+		IAI47_12890	0.41	+0.6
2,723,089	-		IAI47_12890	0.41	-0.1
2,723,106	+		IAI47_12890	0.43	-0.4
2,723,147	-		IAI47_12890	0.46	-0.8
2,723,147	-		IAI47_12890	0.46	+0.1
2,723,149	+		IAI47_12890	0.46	-1.1
2,723,149	+		IAI47_12890	0.46	-1.7
2,723,150	-		IAI47_12890	0.46	+0.5
2,723,164	+		IAI47_12890	0.48	+0.2
2,723,298	-		IAI47_12890	0.59	-1.4
2,723,325	-		IAI47_12890	0.62	+0.7
2,723,325	-		IAI47_12890	0.62	+0.8
2,723,325	-		IAI47_12890	0.62	-1.9
2,723,341	+		IAI47_12890	0.63	+0.2
2,723,342	-		IAI47_12890	0.63	+0.2
2,723,349	+		IAI47_12890	0.64	-0.9
2,723,349	+		IAI47_12890	0.64	-1.1
2,723,349	+		IAI47_12890	0.64	+0.3
2,723,349	+		IAI47_12890	0.64	-1.2
2,723,349	+		IAI47_12890	0.64	+0.9
2,723,350	-		IAI47_12890	0.64	+1.3
2,723,350	-		IAI47_12890	0.64	-0.7
2,723,352	+		IAI47_12890	0.64	-0.4
2,723,353	-		IAI47_12890	0.64	+0.2
2,723,353	-		IAI47_12890	0.64	+0.2
2,723,353	-		IAI47_12890	0.64	-0.3
2,723,364	+		IAI47_12890	0.65	-0.4
2,723,364	+		IAI47_12890	0.65	+1.2
2,723,364	+		IAI47_12890	0.65	+0.2
2,723,365	-		IAI47_12890	0.65	+0.6
2,723,365	-		IAI47_12890	0.65	+0.6
2,723,365	-		IAI47_12890	0.65	-0.5
2,723,365	-		IAI47_12890	0.65	+0.4
2,723,365	-		IAI47_12890	0.65	+0.7
2,723,365	-		IAI47_12890	0.65	-0.8
2,723,544	+		IAI47_12890	0.81	-1.8
2,723,545	-		IAI47_12890	0.81	+0.5
2,723,545	-		IAI47_12890	0.81	+1.2
2,723,545	-		IAI47_12890	0.81	+1.0
2,723,547	+		IAI47_12890	0.81	+1.5
2,723,547	+		IAI47_12890	0.81	-0.8
2,723,547	+		IAI47_12890	0.81	-0.1
2,723,547	+		IAI47_12890	0.81	+0.6
2,723,547	+		IAI47_12890	0.81	+2.0
2,723,547	+		IAI47_12890	0.81	-0.4
2,723,547	+		IAI47_12890	0.81	-0.3
2,723,548	-		IAI47_12890	0.81	+0.0
2,723,548	-		IAI47_12890	0.81	+0.9