Strain Fitness in Pantoea sp. MT58 around IAI47_11985

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
2,538,388	-		IAI47_11980	0.19	+0.3
2,538,389	+		IAI47_11980	0.20	-0.1
2,538,389	+		IAI47_11980	0.20	+0.3
2,538,389	+		IAI47_11980	0.20	+1.1
2,538,390	-		IAI47_11980	0.20	+0.1
2,538,401	+		IAI47_11980	0.22	+0.1
2,538,401	+		IAI47_11980	0.22	-0.4
2,538,402	-		IAI47_11980	0.22	+0.5
2,538,402	-		IAI47_11980	0.22	-1.6
2,538,423	+		IAI47_11980	0.26	+0.9
2,538,424	-		IAI47_11980	0.26	+0.1
2,538,428	+		IAI47_11980	0.27	+0.4
2,538,428	+		IAI47_11980	0.27	-0.9
2,538,428	+		IAI47_11980	0.27	-0.3
2,538,429	-		IAI47_11980	0.27	-0.1
2,538,429	-		IAI47_11980	0.27	+1.1
2,538,429	-		IAI47_11980	0.27	+1.0
2,538,461	+		IAI47_11980	0.33	-0.9
2,538,461	+		IAI47_11980	0.33	-0.9
2,538,461	+		IAI47_11980	0.33	-0.2
2,538,461	+		IAI47_11980	0.33	-0.9
2,538,461	+		IAI47_11980	0.33	+0.3
2,538,461	+		IAI47_11980	0.33	+0.6
2,538,461	+		IAI47_11980	0.33	-0.7
2,538,461	+		IAI47_11980	0.33	+0.1
2,538,461	+		IAI47_11980	0.33	-0.5
2,538,461	+		IAI47_11980	0.33	-0.3
2,538,461	+		IAI47_11980	0.33	+0.9
2,538,461	+		IAI47_11980	0.33	+1.1
2,538,461	+		IAI47_11980	0.33	+1.1
2,538,462	-		IAI47_11980	0.33	+1.1
2,538,462	-		IAI47_11980	0.33	+0.3
2,538,462	-		IAI47_11980	0.33	+0.8
2,538,462	-		IAI47_11980	0.33	+2.5
2,538,462	-		IAI47_11980	0.33	+1.4
2,538,462	-		IAI47_11980	0.33	-0.2
2,538,465	+		IAI47_11980	0.34	+0.9
2,538,506	+		IAI47_11980	0.41	+0.5
2,538,530	-		IAI47_11980	0.45	+0.6
2,538,598	+		IAI47_11980	0.58	-0.2
2,538,598	+		IAI47_11980	0.58	-0.5
2,538,598	+		IAI47_11980	0.58	+0.1
2,538,599	-		IAI47_11980	0.58	-0.7
2,538,599	-		IAI47_11980	0.58	+0.1
2,538,599	-		IAI47_11980	0.58	-1.6
2,538,602	-		IAI47_11980	0.59	+1.7
2,538,715	+		IAI47_11980	0.80	+0.1
2,538,715	+		IAI47_11980	0.80	+2.9
2,538,715	+		IAI47_11980	0.80	+0.0
2,538,716	-		IAI47_11980	0.80	+0.1
2,538,726	-		IAI47_11980	0.82	+0.1
2,538,726	-		IAI47_11980	0.82	-0.5
2,538,760	+		IAI47_11980	0.88	-1.3
2,538,809	-				-0.2
2,538,809	-				-0.3
2,538,819	+				+0.4
2,538,820	-				-0.4
2,538,868	+				+0.4
2,538,868	+				-0.5
2,538,868	+				+0.6
2,538,868	+				-0.7
2,538,869	-				+0.8
2,538,882	+				-0.4
2,538,891	+				+0.4
2,538,891	+				+0.7
2,538,892	-				+0.3
2,538,892	-				+0.9
2,538,892	-				+0.6
2,538,892	-				+0.1
2,538,892	-				-0.2
2,538,892	-				-0.7
2,538,892	-				-0.9
2,538,892	-				-0.4
2,538,936	+				-0.3
2,538,937	-				-0.6
2,538,938	-				+0.0
2,538,965	+				-0.4
2,538,965	+				-0.4
2,538,965	+				-0.5
2,538,966	-				+0.1
2,539,028	+				-0.9
2,539,028	+				-0.1
2,539,028	+				+0.5
2,539,028	+				+0.7
2,539,029	-				+1.1
2,539,029	-				-0.2
2,539,029	-				+0.6
2,539,040	-				+2.3
2,539,040	-				+0.0
2,539,079	+				-1.3
2,539,079	+				-0.6
2,539,099	-				-0.7
2,539,120	+				-0.1
2,539,121	-				+0.8
2,539,121	-				-1.9
2,539,149	+				+0.5
2,539,175	+				+0.7
2,539,175	+				-0.1
2,539,205	+				-0.9
2,539,206	-				-0.3
2,539,243	+				+0.3
2,539,243	+				+0.6
2,539,276	-				+2.7
2,539,358	+				+0.3
2,539,358	+				+0.5
2,539,359	-				-0.2
2,539,359	-				+0.8
2,539,359	-				-0.9
2,539,377	+				+1.1
2,539,377	+				-0.3
2,539,378	-				+3.1
2,539,387	+				+1.1
2,539,387	+				+0.4
2,539,387	+				-1.1
2,539,387	+				+0.7
2,539,387	+				-0.2
2,539,388	-				-0.1
2,539,388	-				-0.9
2,539,388	-				-0.3
2,539,388	-				-0.9
2,539,397	+				-0.6
2,539,398	-				-0.1
2,539,398	-				+0.6
2,539,421	+				-0.3
2,539,422	-				-0.4
2,539,454	+				-1.9
2,539,460	-				+1.1
2,539,484	+				-0.1
2,539,484	+				-1.9
2,539,484	+				-0.3
2,539,484	+				+0.9
2,539,484	+				-0.4
2,539,484	+				-0.1
2,539,485	-				+0.3
2,539,485	-				+0.1
2,539,485	-				+1.4
2,539,485	-				-0.2
2,539,485	-				+2.1
2,539,490	-				+1.1
2,539,501	+				-0.3
2,539,501	+				-0.1
2,539,502	-				-0.3
2,539,502	-				+0.7
2,539,518	-		IAI47_11985	0.10	+0.7
2,539,518	-		IAI47_11985	0.10	+1.1
2,539,518	-		IAI47_11985	0.10	+0.0
2,539,518	-		IAI47_11985	0.10	-0.5
2,539,518	-		IAI47_11985	0.10	-1.3
2,539,613	+		IAI47_11985	0.17	-0.7
2,539,615	+		IAI47_11985	0.18	+0.9
2,539,615	+		IAI47_11985	0.18	+0.1
2,539,615	+		IAI47_11985	0.18	+1.7
2,539,616	-		IAI47_11985	0.18	+1.1
2,539,616	-		IAI47_11985	0.18	+0.9
2,539,616	-		IAI47_11985	0.18	+0.5
2,539,616	-		IAI47_11985	0.18	-0.9
2,539,616	-		IAI47_11985	0.18	+0.1
2,539,621	+		IAI47_11985	0.18	-0.2
2,539,621	+		IAI47_11985	0.18	-0.1
2,539,621	+		IAI47_11985	0.18	+0.9
2,539,621	+		IAI47_11985	0.18	-0.0
2,539,621	+		IAI47_11985	0.18	+0.1
2,539,622	-		IAI47_11985	0.18	+0.4
2,539,622	-		IAI47_11985	0.18	-1.9
2,539,622	-		IAI47_11985	0.18	+0.7
2,539,622	-		IAI47_11985	0.18	+0.3
2,539,622	-		IAI47_11985	0.18	+0.7
2,539,622	-		IAI47_11985	0.18	-0.4
2,539,622	-		IAI47_11985	0.18	-0.9
2,539,638	-		IAI47_11985	0.19	-0.3
2,539,759	+		IAI47_11985	0.29	+0.8
2,539,759	+		IAI47_11985	0.29	+0.5
2,539,760	-		IAI47_11985	0.29	+1.7
2,539,760	-		IAI47_11985	0.29	+0.3
2,539,760	-		IAI47_11985	0.29	+1.8
2,539,760	-		IAI47_11985	0.29	+0.7
2,539,760	-		IAI47_11985	0.29	+1.1
2,539,760	-		IAI47_11985	0.29	-0.0
2,539,815	-		IAI47_11985	0.33	-0.7
2,539,898	+		IAI47_11985	0.39	+0.6
2,539,899	-		IAI47_11985	0.39	+0.6
2,539,899	-		IAI47_11985	0.39	-1.6
2,539,916	+		IAI47_11985	0.41	+0.9
2,539,917	-		IAI47_11985	0.41	-1.1
2,539,917	-		IAI47_11985	0.41	+1.4
2,539,928	+		IAI47_11985	0.42	+0.1
2,539,929	-		IAI47_11985	0.42	+0.1
2,540,033	+		IAI47_11985	0.50	-0.9
2,540,033	+		IAI47_11985	0.50	+1.1
2,540,033	+				+1.7
2,540,033	+		IAI47_11985	0.50	+0.1
2,540,033	+		IAI47_11985	0.50	-0.1
2,540,034	-		IAI47_11985	0.50	+0.1
2,540,034	-		IAI47_11985	0.50	-0.6
2,540,034	-		IAI47_11985	0.50	+1.1
2,540,034	-		IAI47_11985	0.50	+1.4
2,540,096	-		IAI47_11985	0.54	+0.7
2,540,096	-		IAI47_11985	0.54	+0.7
2,540,096	-		IAI47_11985	0.54	+0.6
2,540,264	+		IAI47_11985	0.67	+0.6
2,540,265	-		IAI47_11985	0.67	+0.1
2,540,347	+		IAI47_11985	0.74	+0.0
2,540,488	+		IAI47_11985	0.84	+0.9
2,540,488	+		IAI47_11985	0.84	-0.1
2,540,489	-		IAI47_11985	0.85	-0.3
2,540,489	-		IAI47_11985	0.85	+0.0
2,540,489	-		IAI47_11985	0.85	+0.8
2,540,562	-				+0.5
2,540,562	-				+0.1
2,540,568	-				+0.1
2,540,582	+				+0.6
2,540,600	+				-0.1
2,540,601	-				-0.6
2,540,663	+				-0.6
2,540,664	-				+0.0
2,540,676	-				+0.7
2,540,684	+				+0.4
2,540,684	+				-0.3
2,540,684	+				-1.0
2,540,684	+				-0.4
2,540,685	-				-0.8
2,540,685	-				+0.9
2,540,685	-				-0.2
2,540,685	-				-0.3
2,540,685	-				-1.4
2,540,685	-				-0.1
2,540,793	+				-0.2
2,540,793	+				-0.3
2,540,793	+				+0.6
2,540,793	+				+0.3
2,540,794	-				+0.0
2,540,794	-				+0.0
2,540,794	-				-3.6
2,540,818	-				+0.7
2,540,823	+				+1.8
2,540,830	-				+1.3
2,540,830	-				-1.4
2,540,830	-				+1.0
2,540,830	-				+1.1
2,540,831	+				+0.6
2,540,831	+				+1.2
2,540,832	-				-0.0
2,540,832	-				-0.5
2,540,832	-				-0.2
2,540,849	+				-0.6
2,540,850	-				+1.1
2,540,861	-				-0.1
2,540,864	+				+0.7
2,540,864	+				-0.1
2,540,864	+				+0.6
2,540,865	-				-0.9
2,540,865	-				+0.4
2,540,865	-				+1.7
2,540,949	-				-0.8
2,540,949	-				+0.9
2,540,949	-				+1.1
2,540,994	+		IAI47_11990	0.17	-2.2
2,541,123	+		IAI47_11990	0.41	+0.3
2,541,124	-		IAI47_11990	0.41	+0.4
2,541,124	-		IAI47_11990	0.41	-0.7
2,541,154	+		IAI47_11990	0.46	-0.9
2,541,154	+		IAI47_11990	0.46	-0.4
2,541,155	-		IAI47_11990	0.46	-0.5
2,541,155	-		IAI47_11990	0.46	-0.9
2,541,155	-		IAI47_11990	0.46	+0.7
2,541,292	+		IAI47_11990	0.72	-0.8
2,541,293	-		IAI47_11990	0.72	+0.1
2,541,319	+		IAI47_11990	0.77	+1.1
2,541,319	+		IAI47_11990	0.77	+3.7
2,541,319	+		IAI47_11990	0.77	+0.1
2,541,319	+		IAI47_11990	0.77	-0.6
2,541,320	-		IAI47_11990	0.77	-0.8
2,541,320	-		IAI47_11990	0.77	-0.2
2,541,320	-		IAI47_11990	0.77	+0.6
2,541,320	-		IAI47_11990	0.77	-3.0
2,541,320	-		IAI47_11990	0.77	+1.2
2,541,320	-		IAI47_11990	0.77	+0.1
2,541,328	+		IAI47_11990	0.78	-0.7
2,541,328	+		IAI47_11990	0.78	+0.2
2,541,328	+		IAI47_11990	0.78	-1.9
2,541,329	-		IAI47_11990	0.78	+0.1
2,541,329	-		IAI47_11990	0.78	+0.4
2,541,345	+		IAI47_11990	0.81	+1.5
2,541,345	+		IAI47_11990	0.81	-0.9
2,541,345	+		IAI47_11990	0.81	-0.4
2,541,346	-		IAI47_11990	0.82	+1.0
2,541,346	-		IAI47_11990	0.82	-0.9
2,541,346	-		IAI47_11990	0.82	+1.5
2,541,373	+		IAI47_11990	0.87	-0.1
2,541,374	-		IAI47_11990	0.87	+0.2
2,541,435	+				-0.0
2,541,435	+				+0.1
2,541,435	+				+0.5
2,541,435	+				+0.3
2,541,436	-				+0.1
2,541,436	-				+0.9
2,541,445	+				-0.0
2,541,445	+				-0.3
2,541,445	+				+0.1
2,541,445	+				+0.3
2,541,445	+				-0.3
2,541,446	-				+0.7
2,541,446	-				+0.1
2,541,446	-				+0.4
2,541,446	-				-0.3
2,541,446	-				+1.0
2,541,446	-				+1.5
2,541,446	-				+2.7
2,541,448	+				-0.7
2,541,448	+				-0.1
2,541,448	+				-0.2
2,541,449	-				+0.9
2,541,449	-				-0.2
2,541,449	-				+0.0
2,541,449	-				+0.0
2,541,466	+				+0.1
2,541,466	+				+0.6
2,541,466	+				+0.1
2,541,467	-				-0.9
2,541,467	-				-0.6
2,541,487	+				+1.1
2,541,488	-				-1.7
2,541,488	-				-0.3
2,541,563	+				+0.1