Strain Fitness in Pantoea sp. MT58 around IAI47_10905

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
2,300,588	+		IAI47_10895	0.64	-0.3
2,300,589	-		IAI47_10895	0.64	-0.7
2,300,601	+		IAI47_10895	0.65	+0.2
2,300,602	-		IAI47_10895	0.65	+0.5
2,300,607	+		IAI47_10895	0.66	+0.7
2,300,608	-		IAI47_10895	0.66	-0.1
2,300,631	+		IAI47_10895	0.68	-0.2
2,300,631	+		IAI47_10895	0.68	+0.1
2,300,631	+		IAI47_10895	0.68	-0.8
2,300,631	+		IAI47_10895	0.68	-0.2
2,300,632	-		IAI47_10895	0.68	+0.6
2,300,632	-		IAI47_10895	0.68	+0.1
2,300,632	-		IAI47_10895	0.68	+0.4
2,300,672	+		IAI47_10895	0.72	+0.4
2,300,672	+		IAI47_10895	0.72	-0.6
2,300,672	+		IAI47_10895	0.72	-0.0
2,300,672	+		IAI47_10895	0.72	-0.4
2,300,672	+		IAI47_10895	0.72	-0.0
2,300,672	+		IAI47_10895	0.72	-0.0
2,300,672	+		IAI47_10895	0.72	-0.9
2,300,672	+		IAI47_10895	0.72	+0.7
2,300,673	-		IAI47_10895	0.72	+0.3
2,300,673	-		IAI47_10895	0.72	+1.7
2,300,673	-		IAI47_10895	0.72	+2.3
2,300,678	+		IAI47_10895	0.72	-0.8
2,300,693	-		IAI47_10895	0.73	-1.3
2,300,766	+		IAI47_10895	0.80	+0.7
2,300,766	+		IAI47_10895	0.80	-0.6
2,300,767	-		IAI47_10895	0.80	-0.9
2,300,774	-		IAI47_10895	0.81	-0.2
2,300,904	+				+0.4
2,300,904	+				-1.0
2,300,904	+				-0.8
2,300,904	+				+0.1
2,300,904	+				+1.1
2,300,905	-				+0.1
2,300,985	+				-1.3
2,300,985	+				+0.8
2,300,985	+				-1.7
2,300,985	+				-0.7
2,300,985	+				-0.9
2,300,985	+				+1.1
2,300,985	+				+0.4
2,300,985	+				+0.6
2,300,986	-				-0.8
2,300,986	-				-1.3
2,300,986	-				+0.1
2,300,986	-				-0.4
2,300,987	+				+2.4
2,300,987	+				+0.3
2,300,987	+				-1.5
2,300,987	+				-0.6
2,300,988	-				+1.0
2,300,988	-				-1.2
2,300,988	-				-0.0
2,301,027	+				+0.1
2,301,027	+				-0.3
2,301,028	-				-0.8
2,301,028	-				+0.0
2,301,028	-				-0.2
2,301,028	-				-0.4
2,301,036	+				+1.1
2,301,036	+				-1.0
2,301,182	-				+1.5
2,301,198	+				-1.7
2,301,199	-				+0.1
2,301,224	+				-0.6
2,301,229	+				+0.8
2,301,229	+				-0.6
2,301,230	-				+1.1
2,301,230	-				-1.9
2,301,318	+				-0.1
2,301,318	+				-0.5
2,301,318	+				+1.5
2,301,318	+				+1.1
2,301,330	+				-0.5
2,301,396	+				-1.2
2,301,405	+				+0.7
2,301,405	+				+0.3
2,301,405	+				+0.1
2,301,405	+				+0.1
2,301,406	-				+0.6
2,301,406	-				-0.7
2,301,407	+				+1.4
2,301,408	-				+1.3
2,301,408	-				-0.7
2,301,408	-				+2.3
2,301,412	-				+0.1
2,301,437	+				-0.2
2,301,437	+				-0.7
2,301,437	+				+0.2
2,301,437	+				-1.7
2,301,438	-				-0.3
2,301,438	-				-1.3
2,301,438	-				-1.0
2,301,438	-				+0.3
2,301,446	+				-0.0
2,301,446	+				+0.1
2,301,446	+				-0.5
2,301,446	+				+0.2
2,301,447	-				-2.2
2,301,447	-				-0.4
2,301,447	-				-0.6
2,301,447	-				-1.1
2,301,504	-				-0.9
2,301,603	+				-3.7
2,301,603	+				-3.9
2,301,603	+				-3.7
2,301,603	+				-2.3
2,301,604	-				-2.4
2,301,604	-				-1.9
2,301,604	-				-2.9
2,301,604	-				-0.5
2,301,604	-				-2.2
2,301,607	+				+0.1
2,301,607	+				-2.5
2,301,607	+				-2.2
2,301,607	+				-3.2
2,301,607	+				-2.9
2,301,607	+				-1.5
2,301,607	+				-1.9
2,301,608	-				-3.3
2,301,608	-				-3.6
2,301,608	-				-1.9
2,301,608	-				-1.0
2,301,608	-				-3.0
2,301,664	+				-2.2
2,301,664	+				-2.2
2,301,664	+				-0.9
2,301,736	+		IAI47_10905	0.12	-1.2
2,301,737	-		IAI47_10905	0.12	-1.9
2,301,737	-		IAI47_10905	0.12	-1.3
2,301,785	+		IAI47_10905	0.14	-1.8
2,301,786	-		IAI47_10905	0.14	-2.5
2,301,928	+		IAI47_10905	0.20	-1.4
2,302,001	+		IAI47_10905	0.23	-2.5
2,302,001	+		IAI47_10905	0.23	-2.9
2,302,005	+		IAI47_10905	0.23	-3.2
2,302,005	+		IAI47_10905	0.23	-1.2
2,302,005	+		IAI47_10905	0.23	-1.2
2,302,005	+		IAI47_10905	0.23	-2.2
2,302,084	-		IAI47_10905	0.26	-0.2
2,302,084	-		IAI47_10905	0.26	-2.2
2,302,118	+		IAI47_10905	0.28	-0.9
2,302,119	-		IAI47_10905	0.28	-1.9
2,302,179	+		IAI47_10905	0.30	-3.2
2,302,179	+		IAI47_10905	0.30	-1.7
2,302,179	+		IAI47_10905	0.30	-1.9
2,302,179	+		IAI47_10905	0.30	-1.9
2,302,179	+		IAI47_10905	0.30	-0.5
2,302,196	-		IAI47_10905	0.31	-2.1
2,302,288	+		IAI47_10905	0.35	-2.2
2,302,288	+		IAI47_10905	0.35	-0.6
2,302,289	-		IAI47_10905	0.35	-0.6
2,302,289	-		IAI47_10905	0.35	-1.9
2,302,289	-		IAI47_10905	0.35	-2.2
2,302,295	-		IAI47_10905	0.35	-1.5
2,302,300	+		IAI47_10905	0.35	-1.7
2,302,301	-		IAI47_10905	0.35	-1.7
2,302,384	+		IAI47_10905	0.39	-1.5
2,302,385	-		IAI47_10905	0.39	-1.1
2,302,385	-		IAI47_10905	0.39	-2.5
2,302,461	+		IAI47_10905	0.42	-1.5
2,302,462	-		IAI47_10905	0.42	-1.9
2,302,462	-		IAI47_10905	0.42	+0.1
2,302,604	-		IAI47_10905	0.48	-2.9
2,302,657	+		IAI47_10905	0.50	-1.5
2,302,657	+		IAI47_10905	0.50	-1.4
2,302,657	+		IAI47_10905	0.50	-1.9
2,302,658	-		IAI47_10905	0.50	-2.2
2,302,738	+		IAI47_10905	0.54	+0.1
2,302,739	-		IAI47_10905	0.54	-4.6
2,302,751	-		IAI47_10905	0.54	-2.7
2,302,792	+		IAI47_10905	0.56	-1.5
2,302,792	+		IAI47_10905	0.56	-0.1
2,302,792	+		IAI47_10905	0.56	-1.9
2,302,792	+		IAI47_10905	0.56	-1.5
2,302,792	+		IAI47_10905	0.56	-4.2
2,302,793	-		IAI47_10905	0.56	-2.2
2,302,793	-		IAI47_10905	0.56	-3.3
2,302,793	-		IAI47_10905	0.56	-3.0
2,302,793	-		IAI47_10905	0.56	-1.6
2,302,793	-		IAI47_10905	0.56	-1.5
2,302,795	-		IAI47_10905	0.56	-3.0
2,302,795	-		IAI47_10905	0.56	-0.9
2,302,888	+		IAI47_10905	0.60	-0.3
2,302,905	+		IAI47_10905	0.61	-1.7
2,302,906	-		IAI47_10905	0.61	-4.0
2,302,906	-		IAI47_10905	0.61	-0.9
2,302,906	-		IAI47_10905	0.61	-4.0
2,302,919	+		IAI47_10905	0.61	-1.6
2,302,934	-		IAI47_10905	0.62	-2.7
2,302,961	+		IAI47_10905	0.63	-0.6
2,303,037	+		IAI47_10905	0.66	-0.9
2,303,037	+		IAI47_10905	0.66	-4.0
2,303,038	-		IAI47_10905	0.66	-1.2
2,303,038	-		IAI47_10905	0.66	-0.3
2,303,038	-		IAI47_10905	0.66	-2.7
2,303,038	-		IAI47_10905	0.66	-2.9
2,303,065	+		IAI47_10905	0.67	-3.7
2,303,065	+		IAI47_10905	0.67	-2.8
2,303,066	-		IAI47_10905	0.67	+0.1
2,303,119	-		IAI47_10905	0.70	+0.1
2,303,179	+		IAI47_10905	0.72	-1.8
2,303,179	+		IAI47_10905	0.72	-2.2
2,303,182	+		IAI47_10905	0.72	-0.9
2,303,182	+		IAI47_10905	0.72	-2.2
2,303,182	+		IAI47_10905	0.72	-2.5
2,303,182	+		IAI47_10905	0.72	-1.5
2,303,182	+		IAI47_10905	0.72	-1.5
2,303,183	-		IAI47_10905	0.72	-2.5
2,303,183	-		IAI47_10905	0.72	-0.5
2,303,183	-		IAI47_10905	0.72	-2.5
2,303,183	-		IAI47_10905	0.72	-2.4
2,303,213	-		IAI47_10905	0.74	-1.9
2,303,213	-		IAI47_10905	0.74	-2.7
2,303,213	-		IAI47_10905	0.74	-4.7
2,303,270	-		IAI47_10905	0.76	-2.5
2,303,270	-		IAI47_10905	0.76	-2.7
2,303,301	+		IAI47_10905	0.77	-1.0
2,303,301	+		IAI47_10905	0.77	-2.5
2,303,302	-		IAI47_10905	0.77	-2.7
2,303,302	-		IAI47_10905	0.77	-2.0
2,303,319	+		IAI47_10905	0.78	-0.5
2,303,326	+		IAI47_10905	0.78	-3.3
2,303,326	+		IAI47_10905	0.78	-3.0
2,303,326	+		IAI47_10905	0.78	-4.2
2,303,326	+		IAI47_10905	0.78	-0.9
2,303,327	-		IAI47_10905	0.78	-3.5
2,303,338	+		IAI47_10905	0.79	-2.0
2,303,338	+		IAI47_10905	0.79	-0.6
2,303,387	-		IAI47_10905	0.81	-2.5
2,303,440	+		IAI47_10905	0.83	-2.5
2,303,441	-		IAI47_10905	0.83	-1.5
2,303,441	-		IAI47_10905	0.83	-0.9
2,303,508	+		IAI47_10905	0.86	-1.2
2,303,508	+		IAI47_10905	0.86	-3.1
2,303,508	+		IAI47_10905	0.86	-3.5
2,303,509	-		IAI47_10905	0.86	-1.9
2,303,509	-		IAI47_10905	0.86	-1.7
2,303,509	-		IAI47_10905	0.86	-4.3
2,303,635	-				-4.0
2,303,635	-				-1.3
2,303,675	-				-2.5
2,303,675	-				-1.9
2,303,682	+				-1.7
2,303,682	+				-2.5
2,303,682	+				-2.2
2,303,682	+				-3.2
2,303,682	+				-2.5
2,303,683	-				-1.5
2,303,683	-				-1.5
2,303,683	-				-2.6
2,303,683	-				-1.7
2,303,683	-				-2.9
2,303,683	-				-4.2
2,303,709	-				-0.9
2,303,734	+				-0.9
2,303,734	+				-3.5
2,303,735	-				-2.9
2,303,735	-				-1.9
2,303,737	+				+0.7
2,303,737	+				-0.9
2,303,765	-				-2.3
2,303,791	+				-1.9
2,303,791	+				-1.9
2,303,791	+				-0.9
2,303,792	-				-2.5
2,303,792	-				-1.9
2,303,792	-				-3.6
2,303,805	+				-2.5
2,303,806	-				-2.7
2,303,806	-				-2.2
2,303,806	-				-1.6
2,303,806	-				-2.0
2,303,806	-				+0.1
2,303,856	+				+0.1
2,303,857	-				-2.0
2,303,863	+				-1.9
2,303,864	-				+0.6
2,303,864	-				+0.3
2,303,864	-				-0.1
2,303,864	-				-0.9
2,303,864	-				-0.4
2,303,887	+				-0.9
2,303,887	+				-0.9
2,303,887	+				+0.1
2,303,887	+				-1.5
2,303,888	-				+0.0
2,303,888	-				+0.4
2,303,888	-				+0.1
2,303,888	-				+0.5
2,303,907	+				-1.5
2,303,907	+				+1.7
2,303,907	+				-1.9
2,303,907	+				-0.9
2,303,907	+				-2.3
2,303,908	-				+0.1
2,303,908	-				+0.8
2,303,922	-				-2.9
2,303,922	-				-0.5
2,303,922	-				+0.6
2,303,922	-				-0.2
2,304,006	+				-0.4
2,304,017	-				+0.5
2,304,058	+				-0.3
2,304,058	+				-0.5
2,304,059	-				+3.4
2,304,059	-				-0.9
2,304,094	+				+0.9
2,304,094	+				+1.0
2,304,095	-				-0.6
2,304,105	+				-0.6
2,304,105	+				+1.1
2,304,106	-				-0.1
2,304,106	-				-1.5
2,304,106	-				+1.3
2,304,106	-				+1.1
2,304,106	-				+1.4
2,304,108	+				-0.1
2,304,108	+				-0.7
2,304,116	+				-0.9
2,304,146	+				-0.9
2,304,157	+				-0.3
2,304,157	+				-0.5
2,304,158	-				-0.5
2,304,198	-				+0.9
2,304,206	+				-0.5
2,304,223	+				+0.1
2,304,245	+				-0.4
2,304,273	+				+0.6
2,304,273	+				+0.1
2,304,273	+				-0.1
2,304,273	+				-0.3
2,304,273	+				+1.7
2,304,274	-				+0.1
2,304,274	-				-0.9
2,304,274	-				-0.5
2,304,274	-				-0.1
2,304,274	-				+0.5
2,304,274	-				+1.1
2,304,278	+				-0.9
2,304,278	+				+0.7
2,304,303	+				-1.6
2,304,304	-				+0.2
2,304,317	+				-0.0
2,304,318	-				-0.6
2,304,318	-				-1.9
2,304,326	+				-0.8
2,304,327	-				-0.5
2,304,338	-				+0.9
2,304,374	+		IAI47_10910	0.11	+1.5
2,304,374	+		IAI47_10910	0.11	+1.4
2,304,374	+		IAI47_10910	0.11	-0.3
2,304,375	-		IAI47_10910	0.12	+0.1
2,304,375	-		IAI47_10910	0.12	-1.1
2,304,375	-		IAI47_10910	0.12	-0.8
2,304,440	+		IAI47_10910	0.19	-0.8
2,304,441	-		IAI47_10910	0.20	-0.1
2,304,450	+		IAI47_10910	0.21	+1.7
2,304,546	-		IAI47_10910	0.32	-0.4
2,304,615	-		IAI47_10910	0.41	-1.6
2,304,615	-		IAI47_10910	0.41	+0.5
2,304,636	-		IAI47_10910	0.43	-0.1
2,304,644	+		IAI47_10910	0.44	+1.4
2,304,644	+		IAI47_10910	0.44	+1.0
2,304,648	+		IAI47_10910	0.45	-0.1
2,304,648	+		IAI47_10910	0.45	-1.3
2,304,648	+		IAI47_10910	0.45	+0.4
2,304,648	+		IAI47_10910	0.45	-0.8
2,304,648	+		IAI47_10910	0.45	+1.1
2,304,648	+		IAI47_10910	0.45	-0.6
2,304,648	+		IAI47_10910	0.45	-0.6
2,304,648	+		IAI47_10910	0.45	-1.2
2,304,649	-		IAI47_10910	0.45	+0.1
2,304,649	-		IAI47_10910	0.45	+1.7
2,304,649	-		IAI47_10910	0.45	+1.3
2,304,649	-		IAI47_10910	0.45	-0.1
2,304,649	-		IAI47_10910	0.45	-0.6
2,304,649	-		IAI47_10910	0.45	+0.1
2,304,659	+		IAI47_10910	0.46	-0.9
2,304,659	+		IAI47_10910	0.46	+0.1
2,304,660	-		IAI47_10910	0.46	+0.7
2,304,675	+		IAI47_10910	0.48	+0.2
2,304,699	-		IAI47_10910	0.51	+0.4
2,304,699	-		IAI47_10910	0.51	-0.2
2,304,777	+		IAI47_10910	0.60	-0.4
2,304,778	-		IAI47_10910	0.60	-0.5
2,304,778	-		IAI47_10910	0.60	-1.1
2,304,778	-		IAI47_10910	0.60	+0.5
2,304,778	-		IAI47_10910	0.60	-0.1
2,304,814	-		IAI47_10910	0.65	+2.1
2,304,839	+		IAI47_10910	0.68	-0.8
2,304,840	-		IAI47_10910	0.68	-0.1