Strain Fitness in Pantoea sp. MT58 around IAI47_10490

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
2,222,418	+		IAI47_10485	0.29	+2.0
2,222,419	-		IAI47_10485	0.29	-0.5
2,222,426	+		IAI47_10485	0.30	-1.8
2,222,427	-		IAI47_10485	0.30	-1.5
2,222,427	-		IAI47_10485	0.30	-1.2
2,222,427	-		IAI47_10485	0.30	-1.2
2,222,692	-		IAI47_10485	0.50	-1.3
2,222,692	-		IAI47_10485	0.50	+0.7
2,222,704	+		IAI47_10485	0.51	-0.5
2,222,704	+		IAI47_10485	0.51	+1.7
2,222,704	+		IAI47_10485	0.51	+0.1
2,222,705	-		IAI47_10485	0.51	+0.4
2,222,760	+		IAI47_10485	0.55	+0.1
2,222,760	+		IAI47_10485	0.55	-0.6
2,222,761	-		IAI47_10485	0.55	+0.6
2,222,761	-		IAI47_10485	0.55	-0.9
2,222,761	-		IAI47_10485	0.55	-0.6
2,222,764	+		IAI47_10485	0.55	+1.1
2,222,764	+		IAI47_10485	0.55	-0.5
2,222,764	+		IAI47_10485	0.55	+1.2
2,222,765	-		IAI47_10485	0.55	+2.0
2,222,765	-		IAI47_10485	0.55	-0.4
2,222,819	+		IAI47_10485	0.59	+0.1
2,222,820	-		IAI47_10485	0.59	-0.9
2,222,820	-		IAI47_10485	0.59	-1.2
2,222,820	-		IAI47_10485	0.59	+0.9
2,222,820	-		IAI47_10485	0.59	+0.8
2,222,821	+		IAI47_10485	0.59	-0.9
2,222,821	+		IAI47_10485	0.59	+0.5
2,222,821	+		IAI47_10485	0.59	-0.2
2,222,821	+		IAI47_10485	0.59	+1.4
2,222,821	+		IAI47_10485	0.59	-0.6
2,222,848	+		IAI47_10485	0.61	-0.2
2,222,848	+		IAI47_10485	0.61	-0.4
2,222,848	+		IAI47_10485	0.61	-0.9
2,222,848	+		IAI47_10485	0.61	-0.4
2,222,849	-		IAI47_10485	0.61	+0.5
2,222,858	-		IAI47_10485	0.62	-0.2
2,222,858	-		IAI47_10485	0.62	+2.7
2,222,858	-		IAI47_10485	0.62	-1.2
2,222,902	-		IAI47_10485	0.65	+0.4
2,222,920	+		IAI47_10485	0.67	-1.3
2,222,920	+		IAI47_10485	0.67	+0.1
2,222,921	-		IAI47_10485	0.67	+0.7
2,222,921	-		IAI47_10485	0.67	+0.9
2,223,019	+		IAI47_10485	0.74	-0.1
2,223,020	-		IAI47_10485	0.74	+0.0
2,223,020	-		IAI47_10485	0.74	+0.6
2,223,025	+		IAI47_10485	0.74	+0.5
2,223,025	+		IAI47_10485	0.74	-0.9
2,223,212	+		IAI47_10485	0.88	-1.0
2,223,251	+				+0.1
2,223,252	-				+1.3
2,223,252	-				-0.9
2,223,252	-				+1.9
2,223,252	-				-0.5
2,223,331	+				-0.2
2,223,331	+				+0.5
2,223,332	-				+1.5
2,223,365	+				-0.8
2,223,366	-				+1.1
2,223,397	-				+0.7
2,223,397	-				-0.4
2,223,397	-				+0.3
2,223,438	+				+0.5
2,223,438	+				-0.5
2,223,438	+				+1.1
2,223,439	-				-0.8
2,223,439	-				+0.2
2,223,647	+		IAI47_10490	0.22	-0.0
2,223,647	+		IAI47_10490	0.22	+0.5
2,223,647	+		IAI47_10490	0.22	-1.6
2,223,647	+		IAI47_10490	0.22	+0.4
2,223,648	-		IAI47_10490	0.23	-0.0
2,223,648	-		IAI47_10490	0.23	+0.8
2,223,676	-		IAI47_10490	0.25	-1.1
2,223,707	-		IAI47_10490	0.27	+0.3
2,223,751	+		IAI47_10490	0.30	+1.3
2,223,751	+		IAI47_10490	0.30	+0.5
2,223,751	+		IAI47_10490	0.30	+0.7
2,223,751	+		IAI47_10490	0.30	-0.9
2,223,752	-		IAI47_10490	0.30	-0.6
2,223,787	+		IAI47_10490	0.33	+1.4
2,223,796	-		IAI47_10490	0.34	+0.3
2,223,804	+		IAI47_10490	0.34	-0.2
2,223,804	+		IAI47_10490	0.34	-2.0
2,223,804	+		IAI47_10490	0.34	-1.2
2,223,805	-		IAI47_10490	0.34	+0.1
2,223,805	-		IAI47_10490	0.34	-1.3
2,223,805	-		IAI47_10490	0.34	+0.0
2,223,805	-		IAI47_10490	0.34	+0.3
2,223,837	+		IAI47_10490	0.37	+0.5
2,223,943	-		IAI47_10490	0.44	+0.7
2,223,943	-		IAI47_10490	0.44	+0.6
2,223,960	-		IAI47_10490	0.46	-0.3
2,223,960	-		IAI47_10490	0.46	+0.3
2,223,960	-		IAI47_10490	0.46	-0.9
2,224,086	+		IAI47_10490	0.55	-0.2
2,224,086	+		IAI47_10490	0.55	+0.9
2,224,086	+		IAI47_10490	0.55	+0.9
2,224,086	+		IAI47_10490	0.55	+1.5
2,224,086	+		IAI47_10490	0.55	-0.6
2,224,086	+		IAI47_10490	0.55	+0.8
2,224,086	+		IAI47_10490	0.55	+0.9
2,224,087	-		IAI47_10490	0.55	-0.6
2,224,087	-		IAI47_10490	0.55	-1.7
2,224,087	-		IAI47_10490	0.55	-1.3
2,224,087	-		IAI47_10490	0.55	+0.1
2,224,087	-		IAI47_10490	0.55	+0.1
2,224,087	-		IAI47_10490	0.55	-2.7
2,224,087	-		IAI47_10490	0.55	-0.2
2,224,087	-		IAI47_10490	0.55	+0.1
2,224,089	+		IAI47_10490	0.55	-0.9
2,224,090	-		IAI47_10490	0.55	+0.1
2,224,090	-		IAI47_10490	0.55	+1.7
2,224,094	+		IAI47_10490	0.56	+0.3
2,224,094	+		IAI47_10490	0.56	+0.1
2,224,094	+		IAI47_10490	0.56	+0.5
2,224,094	+		IAI47_10490	0.56	-0.4
2,224,095	-		IAI47_10490	0.56	+0.0
2,224,153	-		IAI47_10490	0.60	+0.4
2,224,182	-		IAI47_10490	0.62	+0.1
2,224,214	+		IAI47_10490	0.65	-0.9
2,224,214	+		IAI47_10490	0.65	+0.1
2,224,215	-		IAI47_10490	0.65	-0.6
2,224,215	-		IAI47_10490	0.65	+0.6
2,224,253	-		IAI47_10490	0.68	+0.1
2,224,253	-		IAI47_10490	0.68	+0.0
2,224,253	-		IAI47_10490	0.68	+1.1
2,224,253	-		IAI47_10490	0.68	+0.9
2,224,253	-		IAI47_10490	0.68	+0.5
2,224,259	+		IAI47_10490	0.68	+0.5
2,224,259	+		IAI47_10490	0.68	+1.3
2,224,259	+		IAI47_10490	0.68	-0.1
2,224,259	+		IAI47_10490	0.68	-0.4
2,224,259	+		IAI47_10490	0.68	+0.8
2,224,260	-		IAI47_10490	0.68	+0.9
2,224,260	-		IAI47_10490	0.68	+0.4
2,224,260	-		IAI47_10490	0.68	-0.1
2,224,307	+		IAI47_10490	0.72	-0.9
2,224,307	+		IAI47_10490	0.72	+2.1
2,224,308	-		IAI47_10490	0.72	+0.5
2,224,316	+		IAI47_10490	0.72	+0.5
2,224,316	+		IAI47_10490	0.72	-1.1
2,224,316	+		IAI47_10490	0.72	-0.9
2,224,316	+		IAI47_10490	0.72	+0.1
2,224,316	+		IAI47_10490	0.72	-0.9
2,224,317	-		IAI47_10490	0.72	+0.4
2,224,317	-		IAI47_10490	0.72	+0.9
2,224,384	+		IAI47_10490	0.77	-1.5
2,224,384	+		IAI47_10490	0.77	-0.3
2,224,385	-		IAI47_10490	0.77	+0.1
2,224,385	-		IAI47_10490	0.77	+0.1
2,224,385	-		IAI47_10490	0.77	+0.5
2,224,385	-		IAI47_10490	0.77	+0.5
2,224,385	-		IAI47_10490	0.77	-1.9
2,224,449	-		IAI47_10490	0.82	-0.3
2,224,544	+		IAI47_10490	0.89	-0.1
2,224,545	-		IAI47_10490	0.89	-0.1
2,224,545	-		IAI47_10490	0.89	-0.2
2,224,545	-		IAI47_10490	0.89	+0.8
2,224,547	+		IAI47_10490	0.89	+0.1
2,224,547	+		IAI47_10490	0.89	-0.2
2,224,547	+		IAI47_10490	0.89	+1.4
2,224,547	+		IAI47_10490	0.89	+0.1
2,224,548	-				+2.1
2,224,548	-		IAI47_10490	0.90	-1.3
2,224,548	-		IAI47_10490	0.90	+1.7
2,224,587	+				-0.9
2,224,597	+				-0.4
2,224,598	-				-0.1
2,224,646	+				-1.6
2,224,646	+				+0.0
2,224,646	+				+2.2
2,224,647	-				-0.8
2,224,647	-				-0.1
2,224,647	-				-0.5
2,224,817	+		IAI47_10495	0.13	-0.1
2,224,818	-		IAI47_10495	0.13	+0.9
2,224,818	-		IAI47_10495	0.13	+0.6
2,224,825	+		IAI47_10495	0.14	-0.5
2,224,825	+		IAI47_10495	0.14	+0.7
2,224,825	+		IAI47_10495	0.14	+0.3
2,224,826	-		IAI47_10495	0.14	-0.4
2,224,895	+		IAI47_10495	0.24	-1.7
2,224,895	+		IAI47_10495	0.24	+0.1
2,224,895	+		IAI47_10495	0.24	-0.1
2,224,895	+		IAI47_10495	0.24	-2.5
2,224,895	+		IAI47_10495	0.24	-0.5
2,224,896	-		IAI47_10495	0.24	+0.5
2,224,896	-		IAI47_10495	0.24	+1.0
2,224,896	-		IAI47_10495	0.24	-0.4
2,224,896	-		IAI47_10495	0.24	-2.2
2,224,898	+		IAI47_10495	0.24	+0.1
2,224,899	-		IAI47_10495	0.25	-0.5
2,224,899	-		IAI47_10495	0.25	-0.1
2,224,940	+		IAI47_10495	0.30	-0.9
2,224,941	-		IAI47_10495	0.31	-0.5
2,224,941	-		IAI47_10495	0.31	-0.9
2,224,941	-		IAI47_10495	0.31	+0.3
2,224,941	-		IAI47_10495	0.31	-0.5
2,224,949	-		IAI47_10495	0.32	+0.6
2,224,949	-		IAI47_10495	0.32	+0.6
2,224,976	-		IAI47_10495	0.36	-0.5
2,224,988	+		IAI47_10495	0.37	-1.5
2,224,988	+		IAI47_10495	0.37	+0.7
2,225,137	+		IAI47_10495	0.59	-0.5
2,225,137	+		IAI47_10495	0.59	+0.1
2,225,138	-		IAI47_10495	0.59	-0.6
2,225,138	-		IAI47_10495	0.59	-0.6
2,225,205	+		IAI47_10495	0.69	+0.6
2,225,206	-		IAI47_10495	0.69	+1.1
2,225,206	-		IAI47_10495	0.69	-0.3
2,225,206	-		IAI47_10495	0.69	+1.3
2,225,214	-		IAI47_10495	0.70	+1.1
2,225,291	+		IAI47_10495	0.81	-0.9
2,225,315	+		IAI47_10495	0.84	+0.0
2,225,315	+		IAI47_10495	0.84	-1.6
2,225,345	+		IAI47_10495	0.89	-0.1
2,225,345	+		IAI47_10495	0.89	-0.1
2,225,346	-		IAI47_10495	0.89	+1.1
2,225,358	-				-0.7
2,225,403	+				+0.6
2,225,403	+				-0.1
2,225,403	+				+0.8
2,225,404	-				-0.2
2,225,404	-				-0.4
2,225,404	-				-1.3
2,225,404	-				-0.7
2,225,456	-				+0.4
2,225,456	-				+1.0
2,225,460	+				+1.1
2,225,515	+				+0.1
2,225,516	-				+0.2
2,225,516	-				+0.7
2,225,559	-				+0.4
2,225,559	-				-1.5