Strain Fitness in Pantoea sp. MT58 around IAI47_10280

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
2,171,282	+		IAI47_10275	0.29	+0.3
2,171,385	-		IAI47_10275	0.36	+2.1
2,171,385	-		IAI47_10275	0.36	+0.4
2,171,530	+		IAI47_10275	0.47	+0.8
2,171,531	-		IAI47_10275	0.47	+0.5
2,171,559	+		IAI47_10275	0.49	+1.6
2,171,559	+		IAI47_10275	0.49	-0.4
2,171,566	+		IAI47_10275	0.49	+0.7
2,171,615	+		IAI47_10275	0.53	+2.1
2,171,615	+		IAI47_10275	0.53	+1.0
2,171,616	-		IAI47_10275	0.53	-0.2
2,171,633	+		IAI47_10275	0.54	+0.4
2,171,634	-		IAI47_10275	0.54	+0.2
2,171,634	-		IAI47_10275	0.54	+0.5
2,171,634	-		IAI47_10275	0.54	-0.5
2,171,672	+		IAI47_10275	0.57	+0.5
2,171,689	+		IAI47_10275	0.58	+0.4
2,171,689	+		IAI47_10275	0.58	+0.6
2,171,690	-		IAI47_10275	0.58	+0.5
2,171,690	-		IAI47_10275	0.58	+1.4
2,171,694	-		IAI47_10275	0.58	-0.5
2,171,768	-		IAI47_10275	0.64	+0.8
2,171,853	-		IAI47_10275	0.70	+0.5
2,171,870	-		IAI47_10275	0.71	-0.8
2,171,888	+		IAI47_10275	0.72	+2.0
2,171,888	+		IAI47_10275	0.72	+0.6
2,171,888	+		IAI47_10275	0.72	+1.0
2,171,889	-		IAI47_10275	0.73	-0.2
2,171,889	-		IAI47_10275	0.73	+0.6
2,171,889	-		IAI47_10275	0.73	+1.3
2,171,889	-		IAI47_10275	0.73	+1.4
2,171,938	+		IAI47_10275	0.76	-0.1
2,171,938	+		IAI47_10275	0.76	-0.2
2,171,939	-		IAI47_10275	0.76	+0.4
2,171,939	-		IAI47_10275	0.76	+1.6
2,171,969	+		IAI47_10275	0.78	+1.3
2,171,997	-		IAI47_10275	0.80	+0.8
2,172,059	+		IAI47_10275	0.85	+1.1
2,172,059	+		IAI47_10275	0.85	+1.0
2,172,059	+		IAI47_10275	0.85	-0.1
2,172,060	-		IAI47_10275	0.85	+0.6
2,172,062	+		IAI47_10275	0.85	+0.1
2,172,062	+		IAI47_10275	0.85	+0.7
2,172,062	+		IAI47_10275	0.85	+2.3
2,172,063	-		IAI47_10275	0.85	+0.8
2,172,063	-		IAI47_10275	0.85	+0.9
2,172,063	-		IAI47_10275	0.85	+0.5
2,172,071	+		IAI47_10275	0.86	+0.9
2,172,071	+		IAI47_10275	0.86	+0.3
2,172,072	-		IAI47_10275	0.86	+1.5
2,172,072	-		IAI47_10275	0.86	+1.2
2,172,107	+		IAI47_10275	0.88	+0.1
2,172,116	+		IAI47_10275	0.89	-0.5
2,172,117	-		IAI47_10275	0.89	+2.0
2,172,129	+		IAI47_10275	0.90	+0.2
2,172,131	+				+0.8
2,172,132	-				-0.2
2,172,132	-				-0.2
2,172,132	-				+0.3
2,172,132	-				+1.8
2,172,137	+				+0.7
2,172,138	-				+0.7
2,172,138	-				+0.9
2,172,138	-				+1.0
2,172,164	+				+1.5
2,172,164	+				+0.4
2,172,164	+				+0.7
2,172,164	+				+0.7
2,172,165	-				+1.0
2,172,165	-				+0.3
2,172,191	+				+0.6
2,172,192	-				-0.0
2,172,192	-				+1.8
2,172,192	-				+0.8
2,172,193	+				+1.0
2,172,193	+				+2.4
2,172,194	-				+1.0
2,172,219	+				+0.7
2,172,219	+				+1.5
2,172,219	+				+1.4
2,172,220	-				-0.2
2,172,220	-				+0.7
2,172,220	-				+0.3
2,172,220	-				+1.3
2,172,251	+				+1.8
2,172,251	+				+0.6
2,172,252	-				+0.4
2,172,252	-				+2.2
2,172,264	-				+0.5
2,172,264	-				-0.9
2,172,267	+				+1.7
2,172,267	+				+0.5
2,172,268	-				+0.1
2,172,268	-				+0.1
2,172,268	-				+0.8
2,172,268	-				+0.2
2,172,268	-				+0.8
2,172,323	-				+1.6
2,172,323	-				+0.4
2,172,323	-				+1.5
2,172,443	-				+0.4
2,172,586	+		IAI47_10280	0.11	-1.2
2,172,587	-		IAI47_10280	0.11	+0.1
2,172,587	-		IAI47_10280	0.11	+0.1
2,172,656	-		IAI47_10280	0.13	+1.0
2,172,656	-		IAI47_10280	0.13	-0.1
2,172,656	-		IAI47_10280	0.13	-0.1
2,172,656	-		IAI47_10280	0.13	-0.1
2,172,779	+		IAI47_10280	0.17	+1.5
2,172,779	+		IAI47_10280	0.17	+1.6
2,172,779	+		IAI47_10280	0.17	-0.5
2,172,779	+		IAI47_10280	0.17	+1.5
2,172,779	+		IAI47_10280	0.17	+2.1
2,172,779	+		IAI47_10280	0.17	+0.4
2,172,780	-		IAI47_10280	0.17	+0.1
2,172,780	-		IAI47_10280	0.17	+0.5
2,172,780	-		IAI47_10280	0.17	+2.0
2,172,875	-		IAI47_10280	0.20	+0.1
2,172,875	-		IAI47_10280	0.20	+0.5
2,172,899	+		IAI47_10280	0.21	+0.4
2,172,899	+		IAI47_10280	0.21	+1.1
2,172,911	+		IAI47_10280	0.22	-0.0
2,172,912	-		IAI47_10280	0.22	+0.1
2,172,912	-		IAI47_10280	0.22	+2.0
2,172,977	-		IAI47_10280	0.24	+3.6
2,172,977	-		IAI47_10280	0.24	+2.4
2,173,033	+		IAI47_10280	0.26	+0.9
2,173,034	-		IAI47_10280	0.26	+2.5
2,173,034	-		IAI47_10280	0.26	+2.4
2,173,091	+		IAI47_10280	0.28	+1.1
2,173,091	+		IAI47_10280	0.28	-0.3
2,173,091	+		IAI47_10280	0.28	+1.3
2,173,092	-		IAI47_10280	0.28	+1.1
2,173,092	-		IAI47_10280	0.28	+0.2
2,173,092	-		IAI47_10280	0.28	-0.7
2,173,092	-		IAI47_10280	0.28	+0.1
2,173,092	-		IAI47_10280	0.28	+0.7
2,173,092	-		IAI47_10280	0.28	+0.1
2,173,092	-		IAI47_10280	0.28	+0.8
2,173,092	-		IAI47_10280	0.28	+1.5
2,173,092	-		IAI47_10280	0.28	+1.5
2,173,133	+		IAI47_10280	0.29	+0.1
2,173,134	-		IAI47_10280	0.29	-1.2
2,173,134	-		IAI47_10280	0.29	+0.1
2,173,135	+		IAI47_10280	0.29	+1.9
2,173,184	-		IAI47_10280	0.31	+1.2
2,173,184	-		IAI47_10280	0.31	+0.5
2,173,225	+		IAI47_10280	0.32	+0.4
2,173,225	+		IAI47_10280	0.32	+0.9
2,173,225	+		IAI47_10280	0.32	+0.7
2,173,225	+		IAI47_10280	0.32	+0.5
2,173,226	-		IAI47_10280	0.32	-0.9
2,173,226	-		IAI47_10280	0.32	+0.5
2,173,226	-		IAI47_10280	0.32	+0.5
2,173,226	-		IAI47_10280	0.32	-0.1
2,173,326	-		IAI47_10280	0.36	+0.3
2,173,347	-		IAI47_10280	0.36	+0.6
2,173,366	+		IAI47_10280	0.37	+0.7
2,173,367	-		IAI47_10280	0.37	+1.6
2,173,367	-		IAI47_10280	0.37	+0.4
2,173,400	+		IAI47_10280	0.38	-0.9
2,173,414	+		IAI47_10280	0.39	+0.4
2,173,414	+		IAI47_10280	0.39	-0.6
2,173,415	-		IAI47_10280	0.39	+1.7
2,173,450	+		IAI47_10280	0.40	+0.2
2,173,450	+		IAI47_10280	0.40	+1.3
2,173,493	+		IAI47_10280	0.41	+0.6
2,173,493	+		IAI47_10280	0.41	-0.1
2,173,519	+		IAI47_10280	0.42	+0.2
2,173,519	+		IAI47_10280	0.42	-0.2
2,173,519	+		IAI47_10280	0.42	+1.6
2,173,519	+		IAI47_10280	0.42	+1.1
2,173,520	-		IAI47_10280	0.42	+2.3
2,173,520	-		IAI47_10280	0.42	+0.4
2,173,520	-		IAI47_10280	0.42	+1.9
2,174,062	+		IAI47_10280	0.60	+0.5
2,174,062	+		IAI47_10280	0.60	+0.0
2,174,063	-		IAI47_10280	0.60	+0.7
2,174,063	-		IAI47_10280	0.60	-0.2
2,174,080	+		IAI47_10280	0.61	-0.1
2,174,112	+		IAI47_10280	0.62	+0.1
2,174,235	+		IAI47_10280	0.66	+0.7
2,174,235	+		IAI47_10280	0.66	+1.0
2,174,235	+		IAI47_10280	0.66	+0.3
2,174,235	+		IAI47_10280	0.66	+0.5
2,174,235	+		IAI47_10280	0.66	+0.7
2,174,235	+		IAI47_10280	0.66	+1.4
2,174,236	-		IAI47_10280	0.66	+2.7
2,174,236	-		IAI47_10280	0.66	+1.6
2,174,236	-		IAI47_10280	0.66	+0.0
2,174,236	-		IAI47_10280	0.66	+0.9
2,174,375	-		IAI47_10280	0.71	+2.4
2,174,407	+		IAI47_10280	0.72	+1.1
2,174,471	-		IAI47_10280	0.74	-0.4
2,174,491	+		IAI47_10280	0.75	-0.5
2,174,491	+		IAI47_10280	0.75	+2.1
2,174,531	+		IAI47_10280	0.76	+0.8
2,174,531	+		IAI47_10280	0.76	+0.8
2,174,532	-		IAI47_10280	0.76	-0.9
2,174,532	-		IAI47_10280	0.76	+0.8
2,174,626	+		IAI47_10280	0.79	+1.3
2,174,626	+		IAI47_10280	0.79	+0.1
2,174,627	-		IAI47_10280	0.79	+0.1
2,174,627	-		IAI47_10280	0.79	+0.6
2,174,646	-		IAI47_10280	0.80	-0.3
2,174,672	-		IAI47_10280	0.81	+0.8
2,174,704	+		IAI47_10280	0.82	+0.4
2,174,792	+		IAI47_10280	0.85	-0.7
2,174,792	+		IAI47_10280	0.85	+0.4
2,174,792	+		IAI47_10280	0.85	-0.9
2,174,859	-		IAI47_10280	0.87	+1.7
2,174,859	-		IAI47_10280	0.87	+1.7
2,174,888	+		IAI47_10280	0.88	+1.1
2,174,900	-		IAI47_10280	0.89	-0.6
2,174,984	+				+1.3
2,174,984	+				+0.3
2,174,985	-				+1.2
2,174,986	+				-0.0
2,174,986	+				-1.7
2,175,019	+				+0.1
2,175,019	+				+1.8
2,175,150	+				+1.1
2,175,150	+				+0.3
2,175,150	+				+1.8
2,175,150	+				+0.4
2,175,151	-				-1.3
2,175,167	-				+1.0
2,175,227	-				+0.2
2,175,303	+				+1.1
2,175,304	-				+0.8
2,175,588	+		IAI47_10285	0.15	+1.1
2,176,163	+		IAI47_10285	0.39	+1.5
2,176,200	+		IAI47_10285	0.41	+1.7
2,176,201	-		IAI47_10285	0.41	+1.1
2,176,201	-		IAI47_10285	0.41	+0.1
2,176,225	+		IAI47_10285	0.42	+0.1
2,176,225	+		IAI47_10285	0.42	-0.2
2,176,225	+		IAI47_10285	0.42	+0.7
2,176,225	+		IAI47_10285	0.42	+0.1
2,176,226	-		IAI47_10285	0.42	+0.6
2,176,226	-		IAI47_10285	0.42	+0.1
2,176,226	-		IAI47_10285	0.42	+0.4
2,176,226	-		IAI47_10285	0.42	+0.8
2,176,226	-		IAI47_10285	0.42	+0.1