Strain Fitness in Pantoea sp. MT58 around IAI47_10105

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
2,139,462	+		IAI47_10095	0.82	+0.4
2,139,462	+		IAI47_10095	0.82	-0.2
2,139,462	+		IAI47_10095	0.82	+0.1
2,139,462	+		IAI47_10095	0.82	-0.4
2,139,462	+		IAI47_10095	0.82	-0.1
2,139,462	+		IAI47_10095	0.82	+1.1
2,139,463	-		IAI47_10095	0.82	-0.4
2,139,463	-		IAI47_10095	0.82	+1.1
2,139,463	-		IAI47_10095	0.82	+0.1
2,139,463	-		IAI47_10095	0.82	-1.5
2,139,463	-		IAI47_10095	0.82	+2.1
2,139,522	+		IAI47_10095	0.89	+1.4
2,139,522	+		IAI47_10095	0.89	+0.7
2,139,522	+		IAI47_10095	0.89	+0.1
2,139,522	+		IAI47_10095	0.89	-0.1
2,139,523	-		IAI47_10095	0.89	+0.2
2,139,586	+				+0.5
2,139,615	+				+0.1
2,139,615	+				+0.6
2,139,616	-				+0.1
2,139,632	+				+1.8
2,139,632	+				+0.0
2,139,633	-				+0.0
2,139,698	-				-0.2
2,139,698	-				-0.3
2,139,711	-		IAI47_10100	0.11	+0.9
2,139,995	+		IAI47_10100	0.48	+0.7
2,139,995	+		IAI47_10100	0.48	+1.1
2,140,043	-		IAI47_10100	0.54	-0.7
2,140,200	+		IAI47_10100	0.75	-1.1
2,140,200	+		IAI47_10100	0.75	-0.9
2,140,201	-		IAI47_10100	0.75	+0.2
2,140,201	-		IAI47_10100	0.75	-0.1
2,140,201	-		IAI47_10100	0.75	+0.8
2,140,201	-		IAI47_10100	0.75	-0.9
2,140,252	+		IAI47_10100	0.82	-0.5
2,140,331	+				+0.7
2,140,331	+				+0.3
2,140,331	+				-0.9
2,140,331	+				-0.6
2,140,332	-				-0.9
2,140,393	+				-0.9
2,140,584	-		IAI47_10105	0.20	+0.8
2,140,591	+		IAI47_10105	0.21	+0.4
2,140,591	+		IAI47_10105	0.21	-0.4
2,140,591	+		IAI47_10105	0.21	+0.8
2,140,591	+		IAI47_10105	0.21	-0.3
2,140,591	+		IAI47_10105	0.21	+0.4
2,140,591	+		IAI47_10105	0.21	+1.4
2,140,592	-		IAI47_10105	0.21	+0.3
2,140,592	-		IAI47_10105	0.21	+0.1
2,140,672	+		IAI47_10105	0.33	-0.2
2,140,712	+		IAI47_10105	0.40	-1.0
2,140,712	+		IAI47_10105	0.40	+0.1
2,140,752	-		IAI47_10105	0.46	-0.9
2,140,767	+		IAI47_10105	0.48	+1.7
2,140,767	+		IAI47_10105	0.48	-1.0
2,140,767	+		IAI47_10105	0.48	-0.2
2,140,767	+		IAI47_10105	0.48	+0.3
2,140,768	-		IAI47_10105	0.49	+1.7
2,140,768	-		IAI47_10105	0.49	+0.5
2,140,768	-		IAI47_10105	0.49	+0.7
2,140,768	-		IAI47_10105	0.49	-1.7
2,140,768	-		IAI47_10105	0.49	-0.0
2,140,801	+		IAI47_10105	0.54	-0.1
2,140,801	+		IAI47_10105	0.54	+0.8
2,140,801	+		IAI47_10105	0.54	-0.5
2,140,802	-		IAI47_10105	0.54	+1.9
2,140,802	-		IAI47_10105	0.54	+1.7
2,140,802	-		IAI47_10105	0.54	+1.9
2,140,802	-		IAI47_10105	0.54	-0.2
2,140,802	-		IAI47_10105	0.54	-0.3
2,140,802	-		IAI47_10105	0.54	-1.9
2,140,802	-		IAI47_10105	0.54	+0.7
2,140,802	-		IAI47_10105	0.54	+1.3
2,140,820	+		IAI47_10105	0.57	+2.1
2,140,820	+		IAI47_10105	0.57	-0.1
2,140,820	+		IAI47_10105	0.57	-0.0
2,140,821	-		IAI47_10105	0.57	-0.4
2,140,821	-		IAI47_10105	0.57	-0.9
2,140,825	+		IAI47_10105	0.57	-0.9
2,140,826	-		IAI47_10105	0.58	-0.6
2,140,853	+		IAI47_10105	0.62	+0.8
2,140,853	+		IAI47_10105	0.62	+0.8
2,140,853	+		IAI47_10105	0.62	-0.1
2,140,854	-		IAI47_10105	0.62	+0.9
2,140,919	+		IAI47_10105	0.72	+0.3
2,140,919	+		IAI47_10105	0.72	-0.1
2,140,920	-		IAI47_10105	0.72	+0.8
2,140,920	-		IAI47_10105	0.72	+0.5
2,140,954	+		IAI47_10105	0.78	+0.1
2,140,955	-		IAI47_10105	0.78	+0.1
2,140,955	-		IAI47_10105	0.78	-0.3
2,140,955	-		IAI47_10105	0.78	+0.7
2,140,955	-		IAI47_10105	0.78	-0.3
2,141,083	-				-0.0
2,141,102	-				-2.1
2,141,102	-				-1.3
2,141,150	+				+0.4
2,141,150	+				-1.5
2,141,164	+				+1.1
2,141,164	+				-0.9
2,141,164	+				-0.2
2,141,165	+				+0.3
2,141,165	-				-0.9
2,141,165	-				+0.7
2,141,241	+				-0.1
2,141,241	+				+0.1
2,141,241	+				+0.2
2,141,242	-				+0.4
2,141,242	-				-2.2
2,141,242	-				+1.1
2,141,242	-				-0.3
2,141,242	-				+0.7
2,141,242	-				+1.3
2,141,242	-				+0.6
2,141,242	-				+0.2
2,141,242	-				+0.5
2,141,242	-				-0.2
2,141,242	-				+0.4
2,141,242	-				+0.2
2,141,242	-				-1.7
2,141,242	-				+0.8
2,141,245	+				-0.7
2,141,246	-				+0.4
2,141,246	-				+0.1
2,141,363	+		IAI47_10110	0.38	-1.4
2,141,363	+		IAI47_10110	0.38	-0.4
2,141,392	+		IAI47_10110	0.47	+0.8
2,141,392	+		IAI47_10110	0.47	-0.5
2,141,392	+		IAI47_10110	0.47	+0.7
2,141,393	-		IAI47_10110	0.48	+1.1
2,141,393	-		IAI47_10110	0.48	+2.4
2,141,393	-		IAI47_10110	0.48	+0.4
2,141,464	+		IAI47_10110	0.69	-0.1
2,141,464	+		IAI47_10110	0.69	+0.5
2,141,464	+		IAI47_10110	0.69	-0.7
2,141,464	+		IAI47_10110	0.69	-1.9
2,141,464	+		IAI47_10110	0.69	+0.9
2,141,464	+		IAI47_10110	0.69	+0.9
2,141,464	+		IAI47_10110	0.69	+0.3
2,141,464	+		IAI47_10110	0.69	+0.1
2,141,464	+		IAI47_10110	0.69	-0.1
2,141,464	+		IAI47_10110	0.69	-0.1
2,141,464	+		IAI47_10110	0.69	-0.5
2,141,465	-		IAI47_10110	0.69	-0.5
2,141,465	-		IAI47_10110	0.69	-0.8
2,141,465	-		IAI47_10110	0.69	+0.1
2,141,466	+		IAI47_10110	0.70	-1.0
2,141,466	+		IAI47_10110	0.70	+0.1
2,141,467	-		IAI47_10110	0.70	-0.0
2,141,523	+		IAI47_10110	0.87	-0.9
2,141,523	+		IAI47_10110	0.87	+0.7
2,141,523	+		IAI47_10110	0.87	+1.4
2,141,523	+		IAI47_10110	0.87	+0.8
2,141,524	-		IAI47_10110	0.87	-0.7
2,141,529	+		IAI47_10110	0.89	-0.2
2,141,530	-		IAI47_10110	0.89	-1.3
2,141,530	-		IAI47_10110	0.89	-2.2
2,141,563	+				-1.9
2,141,563	+				+0.8
2,141,639	+				+1.0
2,141,649	-				+2.0
2,141,786	-				+1.1
2,141,786	-				-0.7
2,141,824	+				-2.2
2,141,825	-				-0.3
2,141,825	-				+1.1
2,141,825	-				+0.7
2,141,827	+				-0.2
2,141,827	+				-0.4
2,141,827	+				+0.1
2,141,827	+				-0.5
2,141,827	+				+1.0
2,141,827	+				+0.6
2,141,827	+				+0.1
2,141,827	+				+0.7
2,141,828	-				+1.4
2,141,828	-				-1.0
2,141,828	-				-0.1
2,141,828	-				-0.6
2,141,828	-				+0.1
2,141,828	-				-0.9
2,141,828	-				-0.6
2,141,828	-				+0.3
2,141,828	-				+0.5
2,141,828	-				-0.6
2,141,828	-				+0.1
2,141,828	-				+0.7
2,141,830	+				-0.9
2,141,830	+				+0.7
2,141,831	-				-0.9
2,141,831	-				-0.3
2,141,851	+				-0.5
2,141,851	+				+1.0
2,141,852	-				+0.1
2,141,884	+		IAI47_10115	0.22	+0.6
2,141,884	+		IAI47_10115	0.22	+0.1
2,141,885	-		IAI47_10115	0.23	+0.6
2,141,923	+		IAI47_10115	0.38	+1.5
2,141,924	-		IAI47_10115	0.39	+2.1
2,141,938	-		IAI47_10115	0.45	-1.8
2,141,938	-		IAI47_10115	0.45	-0.3
2,141,977	+		IAI47_10115	0.61	+2.1
2,141,977	+		IAI47_10115	0.61	-0.6
2,141,977	+		IAI47_10115	0.61	-0.6
2,141,977	+		IAI47_10115	0.61	+0.1
2,141,977	+		IAI47_10115	0.61	-0.4
2,141,985	+		IAI47_10115	0.64	-0.4