Strain Fitness in Pantoea sp. MT58 around IAI47_09705

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
2,053,637	-		IAI47_09700	0.33	+0.1
2,053,637	-		IAI47_09700	0.33	+0.4
2,053,665	+		IAI47_09700	0.35	+0.5
2,053,665	+		IAI47_09700	0.35	-1.0
2,053,665	+		IAI47_09700	0.35	+0.5
2,053,666	-		IAI47_09700	0.35	+3.3
2,053,666	-		IAI47_09700	0.35	-0.2
2,053,666	-		IAI47_09700	0.35	-0.1
2,053,675	+		IAI47_09700	0.36	-0.6
2,053,675	+		IAI47_09700	0.36	-0.1
2,053,675	+		IAI47_09700	0.36	-0.3
2,053,675	+		IAI47_09700	0.36	-0.9
2,053,676	-		IAI47_09700	0.36	-0.8
2,053,690	-		IAI47_09700	0.37	+0.3
2,053,708	-		IAI47_09700	0.38	-0.7
2,053,826	+		IAI47_09700	0.46	+0.7
2,053,961	-		IAI47_09700	0.55	+1.0
2,053,989	+		IAI47_09700	0.57	+0.1
2,054,025	-		IAI47_09700	0.59	-1.1
2,054,028	+		IAI47_09700	0.60	-0.5
2,054,038	-		IAI47_09700	0.60	+0.1
2,054,163	+		IAI47_09700	0.69	-1.0
2,054,164	-		IAI47_09700	0.69	-0.8
2,054,164	-		IAI47_09700	0.69	-1.1
2,054,164	-		IAI47_09700	0.69	-0.9
2,054,164	-		IAI47_09700	0.69	-0.2
2,054,167	-		IAI47_09700	0.69	+1.1
2,054,167	-		IAI47_09700	0.69	-0.2
2,054,167	-		IAI47_09700	0.69	+0.6
2,054,183	+		IAI47_09700	0.70	+0.8
2,054,183	+		IAI47_09700	0.70	+0.7
2,054,183	+		IAI47_09700	0.70	-0.6
2,054,184	-		IAI47_09700	0.70	-0.3
2,054,281	+		IAI47_09700	0.77	+0.6
2,054,282	-		IAI47_09700	0.77	+0.1
2,054,312	+		IAI47_09700	0.79	-0.7
2,054,312	+		IAI47_09700	0.79	+1.2
2,054,312	+		IAI47_09700	0.79	-0.0
2,054,312	+		IAI47_09700	0.79	+0.1
2,054,313	-		IAI47_09700	0.79	+0.3
2,054,313	-		IAI47_09700	0.79	-0.5
2,054,313	-		IAI47_09700	0.79	+0.2
2,054,313	-		IAI47_09700	0.79	-1.3
2,054,313	-		IAI47_09700	0.79	+0.1
2,054,313	-		IAI47_09700	0.79	-0.5
2,054,313	-		IAI47_09700	0.79	+0.6
2,054,342	+		IAI47_09700	0.81	+0.5
2,054,342	+		IAI47_09700	0.81	-0.3
2,054,342	+		IAI47_09700	0.81	+1.2
2,054,343	-		IAI47_09700	0.81	+1.1
2,054,508	+				+0.1
2,054,511	+				-1.2
2,054,511	+				+1.0
2,054,512	-				-0.9
2,054,614	+				+1.1
2,054,614	+				-1.6
2,054,614	+				-0.6
2,054,614	+				+2.4
2,054,615	-				+1.1
2,054,615	-				-1.2
2,054,615	-				+0.2
2,054,620	+				-0.9
2,054,620	+				-1.9
2,054,621	-				-0.6
2,054,621	-				-0.1
2,054,621	-				+1.1
2,054,650	+				+1.8
2,054,660	+				+0.5
2,054,804	-		IAI47_09705	0.15	-0.2
2,054,804	-		IAI47_09705	0.15	-0.9
2,054,804	-		IAI47_09705	0.15	+1.4
2,054,807	+		IAI47_09705	0.15	-0.4
2,054,807	+		IAI47_09705	0.15	-2.2
2,054,807	+		IAI47_09705	0.15	+0.1
2,054,808	-		IAI47_09705	0.15	-1.5
2,054,808	-		IAI47_09705	0.15	-1.2
2,054,808	-		IAI47_09705	0.15	+0.8
2,054,808	-		IAI47_09705	0.15	+1.7
2,054,808	-		IAI47_09705	0.15	+0.4
2,054,808	-		IAI47_09705	0.15	+2.4
2,054,824	+		IAI47_09705	0.17	-2.1
2,054,825	-		IAI47_09705	0.17	+0.1
2,054,849	-		IAI47_09705	0.19	+0.5
2,054,849	-		IAI47_09705	0.19	-0.8
2,054,906	+		IAI47_09705	0.23	+0.4
2,054,907	-		IAI47_09705	0.23	+1.6
2,054,994	+		IAI47_09705	0.30	+0.4
2,055,007	+		IAI47_09705	0.31	-0.5
2,055,008	-		IAI47_09705	0.31	-1.9
2,055,050	-		IAI47_09705	0.35	+0.7
2,055,050	-		IAI47_09705	0.35	-0.2
2,055,067	+		IAI47_09705	0.36	+1.0
2,055,067	+		IAI47_09705	0.36	-0.3
2,055,067	+		IAI47_09705	0.36	-0.7
2,055,067	+		IAI47_09705	0.36	-1.1
2,055,068	-		IAI47_09705	0.36	+0.9
2,055,163	+		IAI47_09705	0.44	-0.5
2,055,163	+		IAI47_09705	0.44	+0.0
2,055,163	+		IAI47_09705	0.44	-0.1
2,055,164	-		IAI47_09705	0.44	-0.2
2,055,164	-		IAI47_09705	0.44	+0.3
2,055,164	-		IAI47_09705	0.44	+1.1
2,055,164	-		IAI47_09705	0.44	-1.2
2,055,190	+		IAI47_09705	0.46	-0.5
2,055,191	-		IAI47_09705	0.46	-1.6
2,055,191	-		IAI47_09705	0.46	+1.7
2,055,191	-		IAI47_09705	0.46	+0.1
2,055,191	-		IAI47_09705	0.46	+2.1
2,055,277	+		IAI47_09705	0.53	-1.9
2,055,278	-		IAI47_09705	0.53	-1.5
2,055,323	+		IAI47_09705	0.56	+0.7
2,055,323	+		IAI47_09705	0.56	+0.1
2,055,323	+		IAI47_09705	0.56	+0.7
2,055,323	+		IAI47_09705	0.56	-0.2
2,055,323	+		IAI47_09705	0.56	-1.9
2,055,323	+		IAI47_09705	0.56	+1.7
2,055,323	+		IAI47_09705	0.56	-0.5
2,055,323	+		IAI47_09705	0.56	-0.7
2,055,323	+		IAI47_09705	0.56	-0.1
2,055,323	+		IAI47_09705	0.56	+0.2
2,055,323	+		IAI47_09705	0.56	-0.8
2,055,323	+		IAI47_09705	0.56	+0.3
2,055,323	+		IAI47_09705	0.56	-0.5
2,055,324	-		IAI47_09705	0.56	+0.1
2,055,324	-		IAI47_09705	0.56	+1.9
2,055,324	-		IAI47_09705	0.56	-0.1
2,055,324	-		IAI47_09705	0.56	-0.5
2,055,324	-		IAI47_09705	0.56	-0.5
2,055,324	-		IAI47_09705	0.56	-1.2
2,055,324	-		IAI47_09705	0.56	+0.1
2,055,325	+		IAI47_09705	0.56	+0.5
2,055,325	+		IAI47_09705	0.56	+0.4
2,055,325	+		IAI47_09705	0.56	+0.1
2,055,325	+		IAI47_09705	0.56	+1.3
2,055,325	+		IAI47_09705	0.56	-2.4
2,055,325	+		IAI47_09705	0.56	+1.1
2,055,325	+		IAI47_09705	0.56	-0.1
2,055,325	+		IAI47_09705	0.56	-0.1
2,055,325	+		IAI47_09705	0.56	-0.4
2,055,326	-		IAI47_09705	0.57	+0.1
2,055,326	-		IAI47_09705	0.57	-2.1
2,055,326	-		IAI47_09705	0.57	+1.1
2,055,326	-		IAI47_09705	0.57	-0.6
2,055,330	+		IAI47_09705	0.57	-0.1
2,055,330	+		IAI47_09705	0.57	+0.5
2,055,330	+		IAI47_09705	0.57	-0.2
2,055,403	-		IAI47_09705	0.63	-1.3
2,055,449	+		IAI47_09705	0.66	+0.7
2,055,449	+		IAI47_09705	0.66	-0.3
2,055,449	+		IAI47_09705	0.66	-0.0
2,055,449	+		IAI47_09705	0.66	+0.1
2,055,449	+		IAI47_09705	0.66	-1.3
2,055,449	+		IAI47_09705	0.66	+0.7
2,055,450	-		IAI47_09705	0.66	+0.3
2,055,450	-		IAI47_09705	0.66	-0.5
2,055,450	-		IAI47_09705	0.66	+0.3
2,055,450	-		IAI47_09705	0.66	+0.2
2,055,450	-		IAI47_09705	0.66	+0.4
2,055,450	-		IAI47_09705	0.66	-1.0
2,055,450	-		IAI47_09705	0.66	-0.5
2,055,450	-		IAI47_09705	0.66	+0.5
2,055,450	-		IAI47_09705	0.66	-0.9
2,055,571	+		IAI47_09705	0.76	+0.5
2,055,571	+		IAI47_09705	0.76	+1.7
2,055,572	-		IAI47_09705	0.76	+0.4
2,055,607	+		IAI47_09705	0.79	+1.0
2,055,719	+		IAI47_09705	0.88	+1.1
2,055,719	+		IAI47_09705	0.88	+0.6
2,055,720	-		IAI47_09705	0.88	+0.5
2,055,774	+				-0.5
2,055,825	+				-0.9
2,055,825	+				-0.9
2,055,825	+				+1.1
2,055,826	-				+1.9
2,055,842	+				+0.8
2,055,870	-				-0.1
2,055,938	+				-0.1
2,055,938	+				+1.1
2,055,938	+				-1.1
2,055,938	+				-0.5
2,055,938	+				+0.3
2,055,938	+				-0.3
2,055,938	+				-0.7
2,055,938	+				+0.1
2,055,938	+				-1.5
2,055,938	+				+1.1
2,055,939	-				+0.4
2,055,939	-				+0.3
2,055,939	-				-0.7
2,055,939	-				+0.2
2,055,939	-				+1.3
2,055,939	-				-1.1
2,055,939	-				+0.5
2,055,939	-				-1.1
2,055,939	-				-0.2
2,055,939	-				+1.4
2,056,031	+		IAI47_09710	0.18	-0.4
2,056,031	+		IAI47_09710	0.18	+0.7
2,056,185	+		IAI47_09710	0.36	-0.4
2,056,186	-		IAI47_09710	0.36	-0.0
2,056,186	-		IAI47_09710	0.36	-0.6
2,056,186	-		IAI47_09710	0.36	-0.7
2,056,186	-		IAI47_09710	0.36	-0.7
2,056,186	-		IAI47_09710	0.36	-0.2
2,056,187	+		IAI47_09710	0.36	-0.4
2,056,187	+		IAI47_09710	0.36	+0.3
2,056,187	+		IAI47_09710	0.36	+0.7
2,056,187	+		IAI47_09710	0.36	+0.8
2,056,187	+		IAI47_09710	0.36	-0.8
2,056,188	-		IAI47_09710	0.36	+1.9
2,056,188	-		IAI47_09710	0.36	+0.1
2,056,188	-		IAI47_09710	0.36	-1.1
2,056,188	-		IAI47_09710	0.36	-0.0
2,056,188	-		IAI47_09710	0.36	+1.3
2,056,265	+		IAI47_09710	0.45	-0.3
2,056,266	-		IAI47_09710	0.46	-0.1
2,056,323	-		IAI47_09710	0.52	+0.3
2,056,323	-		IAI47_09710	0.52	+0.7
2,056,323	-		IAI47_09710	0.52	-0.6
2,056,335	+		IAI47_09710	0.54	+1.1
2,056,335	+		IAI47_09710	0.54	-0.5
2,056,335	+		IAI47_09710	0.54	+0.5
2,056,335	+		IAI47_09710	0.54	-0.5
2,056,335	+		IAI47_09710	0.54	+0.5
2,056,335	+		IAI47_09710	0.54	-0.6
2,056,336	-		IAI47_09710	0.54	+1.9
2,056,336	-		IAI47_09710	0.54	-0.1
2,056,336	-		IAI47_09710	0.54	-0.2
2,056,336	-		IAI47_09710	0.54	+0.1
2,056,336	-		IAI47_09710	0.54	-0.0
2,056,365	-		IAI47_09710	0.57	+0.6
2,056,501	+		IAI47_09710	0.73	+0.1
2,056,502	-		IAI47_09710	0.74	-0.7
2,056,502	-		IAI47_09710	0.74	+2.4
2,056,502	-		IAI47_09710	0.74	-1.7
2,056,502	-		IAI47_09710	0.74	+0.4
2,056,565	-		IAI47_09710	0.81	+0.1
2,056,610	+		IAI47_09710	0.86	+0.3
2,056,610	+		IAI47_09710	0.86	+1.7
2,056,610	+		IAI47_09710	0.86	+0.4
2,056,611	-		IAI47_09710	0.86	-0.8
2,056,611	-		IAI47_09710	0.86	-0.9
2,056,611	-		IAI47_09710	0.86	+0.1
2,056,634	+		IAI47_09710	0.89	-0.3
2,056,635	-		IAI47_09710	0.89	+0.1
2,056,712	+				+0.6
2,056,712	+				-1.1
2,056,712	+				-0.9
2,056,712	+				+0.1
2,056,713	-				+1.0
2,056,713	-				-0.9
2,056,723	-				-0.5
2,056,723	-				+0.1
2,056,765	+		IAI47_09715	0.16	+1.3
2,056,765	+		IAI47_09715	0.16	-0.6
2,056,765	+		IAI47_09715	0.16	-0.5
2,056,765	+		IAI47_09715	0.16	+2.7
2,056,834	+		IAI47_09715	0.38	-0.9
2,056,834	+		IAI47_09715	0.38	-0.8
2,056,834	+		IAI47_09715	0.38	+1.4
2,056,834	+		IAI47_09715	0.38	-0.9
2,056,834	+		IAI47_09715	0.38	+0.3
2,056,834	+		IAI47_09715	0.38	-0.9
2,056,834	+		IAI47_09715	0.38	-0.0
2,056,834	+		IAI47_09715	0.38	-0.6
2,056,834	+		IAI47_09715	0.38	+1.5
2,056,834	+		IAI47_09715	0.38	+0.1
2,056,834	+		IAI47_09715	0.38	+0.1
2,056,834	+		IAI47_09715	0.38	-1.2
2,056,834	+		IAI47_09715	0.38	+0.1
2,056,834	+		IAI47_09715	0.38	+1.2
2,056,834	+		IAI47_09715	0.38	+0.4
2,056,834	+		IAI47_09715	0.38	+1.3
2,056,834	+		IAI47_09715	0.38	-1.5
2,056,834	+		IAI47_09715	0.38	-0.0
2,056,835	-		IAI47_09715	0.38	-0.1
2,056,835	-		IAI47_09715	0.38	-1.7
2,056,835	-		IAI47_09715	0.38	+0.8
2,056,835	-		IAI47_09715	0.38	-0.0
2,056,835	-		IAI47_09715	0.38	+0.5
2,056,835	-		IAI47_09715	0.38	-1.0
2,056,835	-		IAI47_09715	0.38	+0.0
2,056,835	-		IAI47_09715	0.38	-0.0
2,056,835	-		IAI47_09715	0.38	-0.7
2,056,835	-		IAI47_09715	0.38	+0.6
2,056,835	-		IAI47_09715	0.38	-2.5
2,056,835	-		IAI47_09715	0.38	+0.7
2,056,835	-		IAI47_09715	0.38	+1.1
2,056,835	-		IAI47_09715	0.38	-0.3
2,056,835	-		IAI47_09715	0.38	-0.1
2,056,835	-		IAI47_09715	0.38	+1.6
2,056,835	-		IAI47_09715	0.38	-0.3
2,056,835	-		IAI47_09715	0.38	+0.3
2,056,835	-		IAI47_09715	0.38	+0.4
2,056,835	-		IAI47_09715	0.38	+2.1
2,056,835	-		IAI47_09715	0.38	-2.4
2,056,835	-		IAI47_09715	0.38	+0.1
2,056,835	-		IAI47_09715	0.38	+0.1
2,056,835	-		IAI47_09715	0.38	-0.3
2,056,835	-		IAI47_09715	0.38	+1.0
2,056,839	+		IAI47_09715	0.40	-0.7
2,056,839	+		IAI47_09715	0.40	-0.1
2,056,839	+		IAI47_09715	0.40	+0.5
2,056,839	+		IAI47_09715	0.40	+0.3
2,056,839	+		IAI47_09715	0.40	+0.4
2,056,839	+		IAI47_09715	0.40	-0.2
2,056,839	+		IAI47_09715	0.40	+0.4
2,056,839	+		IAI47_09715	0.40	+0.2
2,056,839	+		IAI47_09715	0.40	+1.1
2,056,840	-		IAI47_09715	0.40	+0.8
2,056,840	-		IAI47_09715	0.40	-0.2
2,056,840	-		IAI47_09715	0.40	-1.1