Strain Fitness in Pantoea sp. MT58 around IAI47_09665

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
2,046,101	+		IAI47_09660	0.28	+1.4
2,046,101	+		IAI47_09660	0.28	+0.4
2,046,195	+		IAI47_09660	0.36	+1.3
2,046,195	+		IAI47_09660	0.36	+0.9
2,046,196	-		IAI47_09660	0.36	-0.6
2,046,196	-		IAI47_09660	0.36	-0.3
2,046,357	+		IAI47_09660	0.48	+0.0
2,046,361	+		IAI47_09660	0.49	-0.0
2,046,361	+		IAI47_09660	0.49	+0.3
2,046,361	+		IAI47_09660	0.49	+1.7
2,046,361	+		IAI47_09660	0.49	+0.3
2,046,361	+		IAI47_09660	0.49	-0.7
2,046,361	+		IAI47_09660	0.49	+0.7
2,046,361	+		IAI47_09660	0.49	+2.1
2,046,361	+		IAI47_09660	0.49	+0.1
2,046,362	-		IAI47_09660	0.49	+0.2
2,046,362	-		IAI47_09660	0.49	-0.3
2,046,362	-		IAI47_09660	0.49	-0.2
2,046,362	-		IAI47_09660	0.49	-0.5
2,046,362	-		IAI47_09660	0.49	-0.9
2,046,396	+		IAI47_09660	0.51	-0.2
2,046,396	+		IAI47_09660	0.51	-1.2
2,046,397	-		IAI47_09660	0.52	-0.6
2,046,397	-		IAI47_09660	0.52	+0.3
2,046,470	+		IAI47_09660	0.57	-0.2
2,046,502	+		IAI47_09660	0.60	+0.5
2,046,502	+		IAI47_09660	0.60	-0.6
2,046,502	+		IAI47_09660	0.60	+0.2
2,046,502	+		IAI47_09660	0.60	+1.7
2,046,502	+		IAI47_09660	0.60	+0.4
2,046,503	-		IAI47_09660	0.60	+0.5
2,046,503	-		IAI47_09660	0.60	-0.9
2,046,514	+		IAI47_09660	0.61	-0.7
2,046,514	+		IAI47_09660	0.61	+0.8
2,046,514	+		IAI47_09660	0.61	+0.3
2,046,514	+		IAI47_09660	0.61	-0.5
2,046,514	+		IAI47_09660	0.61	-0.9
2,046,514	+		IAI47_09660	0.61	-1.7
2,046,514	+		IAI47_09660	0.61	+0.1
2,046,514	+		IAI47_09660	0.61	-1.2
2,046,515	-		IAI47_09660	0.61	+1.1
2,046,515	-		IAI47_09660	0.61	-0.9
2,046,515	-		IAI47_09660	0.61	+0.3
2,046,515	-		IAI47_09660	0.61	-0.5
2,046,515	-		IAI47_09660	0.61	+0.4
2,046,515	-		IAI47_09660	0.61	+0.4
2,046,515	-		IAI47_09660	0.61	-0.0
2,046,515	-		IAI47_09660	0.61	-0.7
2,046,515	-		IAI47_09660	0.61	+0.3
2,046,515	-		IAI47_09660	0.61	-0.0
2,046,515	-		IAI47_09660	0.61	+0.3
2,046,515	-		IAI47_09660	0.61	+1.1
2,046,515	-		IAI47_09660	0.61	+0.4
2,046,515	-		IAI47_09660	0.61	+2.1
2,046,515	-		IAI47_09660	0.61	-1.9
2,046,518	+		IAI47_09660	0.61	+2.9
2,046,519	-		IAI47_09660	0.61	-0.1
2,046,519	-		IAI47_09660	0.61	-0.3
2,046,526	+		IAI47_09660	0.62	+3.9
2,046,526	+		IAI47_09660	0.62	+0.3
2,046,527	-		IAI47_09660	0.62	+1.7
2,046,674	+		IAI47_09660	0.73	+1.1
2,046,674	+		IAI47_09660	0.73	+0.1
2,046,674	+		IAI47_09660	0.73	+0.8
2,046,675	-		IAI47_09660	0.73	-1.2
2,046,684	+		IAI47_09660	0.74	-1.2
2,046,691	+		IAI47_09660	0.75	+0.9
2,046,691	+		IAI47_09660	0.75	+0.6
2,046,691	+		IAI47_09660	0.75	-0.9
2,046,691	+		IAI47_09660	0.75	+0.0
2,046,691	+		IAI47_09660	0.75	+0.4
2,046,691	+		IAI47_09660	0.75	+0.7
2,046,692	-		IAI47_09660	0.75	-0.7
2,046,692	-		IAI47_09660	0.75	+0.9
2,046,692	-		IAI47_09660	0.75	+0.8
2,046,692	-		IAI47_09660	0.75	-0.6
2,046,703	-		IAI47_09660	0.76	+0.9
2,046,732	+		IAI47_09660	0.78	-0.3
2,046,732	+		IAI47_09660	0.78	-0.2
2,046,732	+		IAI47_09660	0.78	+0.5
2,046,732	+		IAI47_09660	0.78	+0.1
2,046,732	+		IAI47_09660	0.78	-0.2
2,046,732	+		IAI47_09660	0.78	+0.9
2,046,732	+		IAI47_09660	0.78	-0.3
2,046,732	+		IAI47_09660	0.78	+0.1
2,046,733	-		IAI47_09660	0.78	-0.3
2,046,733	-		IAI47_09660	0.78	-0.3
2,046,733	-		IAI47_09660	0.78	-0.6
2,046,733	-		IAI47_09660	0.78	-0.2
2,046,733	-		IAI47_09660	0.78	+0.8
2,046,738	-		IAI47_09660	0.78	-1.1
2,046,738	-		IAI47_09660	0.78	+0.0
2,046,778	+		IAI47_09660	0.82	+1.2
2,046,853	+		IAI47_09660	0.87	-0.2
2,046,853	+		IAI47_09660	0.87	+0.5
2,046,853	+		IAI47_09660	0.87	-0.7
2,046,853	+		IAI47_09660	0.87	+0.9
2,046,854	-		IAI47_09660	0.88	-0.9
2,046,854	-		IAI47_09660	0.88	+0.1
2,046,872	+		IAI47_09660	0.89	+1.4
2,046,872	+		IAI47_09660	0.89	+1.2
2,046,872	+		IAI47_09660	0.89	-0.1
2,046,872	+		IAI47_09660	0.89	+0.8
2,046,872	+		IAI47_09660	0.89	+0.1
2,046,872	+		IAI47_09660	0.89	+1.0
2,046,873	-		IAI47_09660	0.89	-0.1
2,046,943	+				+1.8
2,046,943	+				-0.2
2,046,944	-				+0.6
2,046,944	-				-0.7
2,046,944	-				-0.1
2,046,946	+				+1.6
2,046,946	+				-0.1
2,046,947	-				-1.0
2,046,947	-				-0.9
2,046,947	-				+0.1
2,046,947	-				+0.1
2,046,968	+				+0.1
2,046,968	+				-0.0
2,046,969	-				+1.1
2,046,969	-				-0.1
2,046,969	-				+0.4
2,046,969	-				-0.2
2,046,969	-				-0.0
2,047,009	+				-0.1
2,047,009	+				-2.2
2,047,009	+				-0.4
2,047,009	+				-0.3
2,047,010	-				+0.2
2,047,026	+				+1.6
2,047,026	+				-0.3
2,047,027	-				-0.8
2,047,104	+				+0.7
2,047,104	+				+0.2
2,047,104	+				-0.1
2,047,104	+				-0.3
2,047,105	-				+0.1
2,047,125	+				-0.8
2,047,126	-				+0.4
2,047,126	-				+1.1
2,047,126	-				-0.4
2,047,219	+				-1.0
2,047,220	-				-0.9
2,047,224	+				-0.1
2,047,224	+				+0.4
2,047,224	+				-0.1
2,047,224	+				-0.2
2,047,224	+				-3.2
2,047,224	+				+0.7
2,047,225	-				+0.3
2,047,225	-				-0.7
2,047,225	-				+0.5
2,047,225	-				+1.0
2,047,225	-				-0.5
2,047,225	-				+1.0
2,047,225	-				-0.9
2,047,268	-		IAI47_09665	0.13	-0.1
2,047,268	-		IAI47_09665	0.13	-1.1
2,047,273	+		IAI47_09665	0.13	+0.7
2,047,273	+		IAI47_09665	0.13	-0.1
2,047,274	-		IAI47_09665	0.13	+0.3
2,047,285	-		IAI47_09665	0.14	-1.2
2,047,285	-		IAI47_09665	0.14	-1.1
2,047,285	-		IAI47_09665	0.14	+0.1
2,047,306	-		IAI47_09665	0.15	-0.0
2,047,306	-		IAI47_09665	0.15	+0.8
2,047,394	-		IAI47_09665	0.21	+0.1
2,047,420	+		IAI47_09665	0.23	+0.5
2,047,421	-		IAI47_09665	0.23	-0.4
2,047,508	+		IAI47_09665	0.29	+0.1
2,047,508	+		IAI47_09665	0.29	+1.1
2,047,543	+		IAI47_09665	0.32	-0.3
2,047,628	-		IAI47_09665	0.38	+0.4
2,047,628	-		IAI47_09665	0.38	-0.9
2,047,638	+		IAI47_09665	0.38	+0.4
2,047,638	+		IAI47_09665	0.38	+0.6
2,047,639	-		IAI47_09665	0.38	-0.9
2,047,639	-		IAI47_09665	0.38	+1.4
2,047,639	-		IAI47_09665	0.38	+1.7
2,047,656	+		IAI47_09665	0.40	+0.1
2,047,656	+		IAI47_09665	0.40	-0.8
2,047,656	+		IAI47_09665	0.40	+1.6
2,047,656	+		IAI47_09665	0.40	-1.0
2,047,656	+		IAI47_09665	0.40	-0.9
2,047,656	+		IAI47_09665	0.40	-0.2
2,047,656	+		IAI47_09665	0.40	+1.1
2,047,657	-		IAI47_09665	0.40	-1.5
2,047,657	-		IAI47_09665	0.40	+0.1
2,047,657	-		IAI47_09665	0.40	+0.1
2,047,657	-		IAI47_09665	0.40	+1.4
2,047,657	-		IAI47_09665	0.40	+0.4
2,047,675	+		IAI47_09665	0.41	-0.9
2,047,676	-		IAI47_09665	0.41	+0.1
2,047,676	-		IAI47_09665	0.41	-0.6
2,047,756	+		IAI47_09665	0.46	+0.2
2,047,828	+		IAI47_09665	0.51	+0.1
2,047,828	+		IAI47_09665	0.51	-0.2
2,047,829	-		IAI47_09665	0.52	-0.4
2,047,914	+		IAI47_09665	0.57	-0.5
2,047,914	+		IAI47_09665	0.57	-1.1
2,047,914	+		IAI47_09665	0.57	+0.5
2,047,914	+		IAI47_09665	0.57	+0.3
2,047,914	+		IAI47_09665	0.57	+1.1
2,047,915	-		IAI47_09665	0.58	+1.8
2,047,924	+		IAI47_09665	0.58	+0.3
2,047,924	+		IAI47_09665	0.58	-0.2
2,047,924	+		IAI47_09665	0.58	-0.3
2,047,925	-		IAI47_09665	0.58	-0.1
2,047,925	-		IAI47_09665	0.58	-0.4
2,047,957	+		IAI47_09665	0.60	+2.4
2,047,957	+		IAI47_09665	0.60	-0.6
2,047,957	+		IAI47_09665	0.60	-0.6
2,047,957	+		IAI47_09665	0.60	-0.3
2,047,958	-		IAI47_09665	0.61	+1.2
2,047,958	-		IAI47_09665	0.61	-0.6
2,048,006	-		IAI47_09665	0.64	-1.2
2,048,006	-		IAI47_09665	0.64	+0.7
2,048,190	+		IAI47_09665	0.77	-0.8
2,048,190	+		IAI47_09665	0.77	-0.1
2,048,191	-		IAI47_09665	0.77	-0.9
2,048,191	-		IAI47_09665	0.77	-0.9
2,048,191	-		IAI47_09665	0.77	-1.1
2,048,191	-		IAI47_09665	0.77	+0.1
2,048,191	-		IAI47_09665	0.77	-0.9
2,048,199	+		IAI47_09665	0.77	+0.1
2,048,199	+		IAI47_09665	0.77	-0.1
2,048,199	+		IAI47_09665	0.77	+0.7
2,048,200	-		IAI47_09665	0.77	+0.3
2,048,200	-		IAI47_09665	0.77	+0.4
2,048,200	-		IAI47_09665	0.77	+0.8
2,048,200	-		IAI47_09665	0.77	-0.2
2,048,497	+				+2.0
2,048,497	+				+0.4
2,048,498	-				-0.6
2,048,502	+				+0.4
2,048,503	-				+1.7
2,048,547	+				-1.2
2,048,548	-				+0.7
2,048,563	-				-0.2
2,048,563	-				-0.8
2,048,599	+				+0.5
2,048,599	+				+0.6
2,048,599	+				-0.2
2,048,599	+				-0.1
2,048,599	+				+0.5
2,048,600	-				-0.0
2,048,600	-				-0.1
2,048,600	-				-0.3
2,048,645	-				-0.7
2,048,682	-				-1.2
2,048,718	+				+0.0
2,048,718	+				-0.0
2,048,718	+				+0.3
2,048,719	-				-1.7
2,048,719	-				-0.5
2,048,751	+		IAI47_09670	0.12	+1.3
2,048,752	-		IAI47_09670	0.12	+1.1
2,048,752	-		IAI47_09670	0.12	+0.8
2,048,767	+		IAI47_09670	0.18	-0.6
2,048,767	+		IAI47_09670	0.18	+1.4
2,048,768	-		IAI47_09670	0.18	-0.1
2,048,881	+		IAI47_09670	0.60	+0.1
2,048,881	+		IAI47_09670	0.60	-1.2
2,048,881	+		IAI47_09670	0.60	+1.1
2,048,881	+		IAI47_09670	0.60	-1.6
2,048,881	+		IAI47_09670	0.60	+1.1
2,048,882	-		IAI47_09670	0.61	+1.1
2,048,882	-		IAI47_09670	0.61	-0.2
2,048,882	-		IAI47_09670	0.61	+0.9
2,048,882	-		IAI47_09670	0.61	+1.1
2,048,882	-		IAI47_09670	0.61	+1.1
2,048,894	+		IAI47_09670	0.65	+0.1
2,048,894	+		IAI47_09670	0.65	+1.1
2,048,895	-		IAI47_09670	0.66	+0.7
2,048,895	-		IAI47_09670	0.66	-0.6
2,048,895	-		IAI47_09670	0.66	-0.9
2,048,948	+		IAI47_09670	0.85	-1.1
2,048,948	+		IAI47_09670	0.85	+0.5
2,048,948	+		IAI47_09670	0.85	+1.1
2,048,948	+		IAI47_09670	0.85	+0.1
2,048,948	+		IAI47_09670	0.85	+0.8
2,048,948	+		IAI47_09670	0.85	-0.9
2,048,948	+		IAI47_09670	0.85	-0.7
2,048,948	+		IAI47_09670	0.85	-0.1
2,048,949	-		IAI47_09670	0.86	-0.3
2,048,949	-		IAI47_09670	0.86	+0.1
2,048,949	-		IAI47_09670	0.86	+1.3
2,048,950	+		IAI47_09670	0.86	+0.6
2,048,951	-		IAI47_09670	0.87	-0.2
2,048,951	-		IAI47_09670	0.87	-0.1
2,048,965	+				-0.7
2,048,965	+				+0.1
2,048,965	+				+1.6
2,048,966	-				-1.1
2,048,966	-				+0.1
2,048,971	+				+0.1
2,048,971	+				+0.1
2,048,972	-				+0.8
2,049,023	-		IAI47_09675	0.33	-0.5
2,049,041	+		IAI47_09675	0.52	+1.3
2,049,042	-		IAI47_09675	0.53	+0.1
2,049,042	-		IAI47_09675	0.53	-0.3
2,049,042	-		IAI47_09675	0.53	-0.6
2,049,088	+				-0.4
2,049,088	+				-0.4
2,049,089	-				-0.2
2,049,089	-				+0.7
2,049,130	+				-0.9
2,049,131	-				+0.7
2,049,174	-		IAI47_09680	0.13	+0.1
2,049,174	-		IAI47_09680	0.13	+0.9
2,049,174	-		IAI47_09680	0.13	-0.3
2,049,230	-		IAI47_09680	0.30	-0.9
2,049,230	-		IAI47_09680	0.30	+0.1
2,049,236	+		IAI47_09680	0.32	+0.9
2,049,236	+		IAI47_09680	0.32	-0.3
2,049,236	+		IAI47_09680	0.32	+0.7
2,049,236	+		IAI47_09680	0.32	-0.9
2,049,236	+		IAI47_09680	0.32	+0.1
2,049,236	+		IAI47_09680	0.32	+1.5
2,049,236	+		IAI47_09680	0.32	+2.9
2,049,236	+		IAI47_09680	0.32	+1.0
2,049,236	+		IAI47_09680	0.32	+0.5
2,049,237	-		IAI47_09680	0.32	-2.1
2,049,237	-		IAI47_09680	0.32	+0.1
2,049,237	-		IAI47_09680	0.32	-0.8
2,049,237	-		IAI47_09680	0.32	+0.9
2,049,237	-		IAI47_09680	0.32	-0.7
2,049,267	+		IAI47_09680	0.42	+0.4
2,049,267	+		IAI47_09680	0.42	+0.4
2,049,268	-		IAI47_09680	0.42	+0.8
2,049,328	+		IAI47_09680	0.60	-0.6
2,049,328	+		IAI47_09680	0.60	-0.2
2,049,328	+		IAI47_09680	0.60	-1.5
2,049,329	-		IAI47_09680	0.61	-0.7
2,049,329	-		IAI47_09680	0.61	+0.0
2,049,329	-		IAI47_09680	0.61	-0.5
2,049,329	-		IAI47_09680	0.61	+0.5
2,049,381	+		IAI47_09680	0.77	-0.4
2,049,381	+		IAI47_09680	0.77	+1.1
2,049,381	+		IAI47_09680	0.77	+1.1
2,049,381	+		IAI47_09680	0.77	+1.3
2,049,381	+		IAI47_09680	0.77	-0.3
2,049,382	-		IAI47_09680	0.77	-0.4
2,049,382	-		IAI47_09680	0.77	-0.9
2,049,382	-		IAI47_09680	0.77	+0.3
2,049,489	+				+0.1
2,049,489	+				-0.6
2,049,490	-				-0.2
2,049,491	+				-0.1
2,049,491	+				+0.6
2,049,491	+				+0.1
2,049,491	+				-1.0
2,049,511	+				-1.4
2,049,512	-				+0.1
2,049,512	-				-0.5
2,049,512	-				-0.4