Strain Fitness in Pantoea sp. MT58 around IAI47_08885

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
1,874,312	+				+0.1
1,874,312	+				+1.3
1,874,312	+				-0.2
1,874,312	+				-1.9
1,874,312	+				+0.3
1,874,312	+				-0.1
1,874,313	-				+0.1
1,874,313	-				-0.0
1,874,313	-				+2.1
1,874,313	-				-0.2
1,874,313	-				+0.4
1,874,313	-				-1.7
1,874,346	+				-0.0
1,874,347	-				-0.2
1,874,347	-				-2.5
1,874,385	+				+0.0
1,874,385	+				-0.6
1,874,385	+				-0.3
1,874,407	+				+0.7
1,874,408	-				-0.1
1,874,408	-				+0.6
1,874,408	-				-1.0
1,874,408	-				+0.5
1,874,416	-				+0.5
1,874,416	-				+0.4
1,874,416	-				-0.4
1,874,427	-				+0.6
1,874,433	+				+0.2
1,874,433	+				+0.4
1,874,433	+				+0.1
1,874,433	+				+0.8
1,874,434	-				+0.9
1,874,442	+				-0.0
1,874,442	+				+0.0
1,874,442	+				-0.7
1,874,442	+				+1.1
1,874,442	+				-0.1
1,874,442	+				+0.9
1,874,453	+				+0.4
1,874,453	+				+0.7
1,874,465	+				+1.0
1,874,465	+				+1.0
1,874,466	-				-0.0
1,874,466	-				+0.7
1,874,512	+				+0.4
1,874,512	+				-0.8
1,874,512	+				-1.1
1,874,512	+				-1.3
1,874,512	+				-1.0
1,874,512	+				-0.9
1,874,512	+				+0.7
1,874,512	+				+1.1
1,874,512	+				-1.8
1,874,512	+				+0.4
1,874,513	-				-1.6
1,874,518	+				+0.1
1,874,518	+				-1.4
1,874,520	+				+0.7
1,874,520	+				+0.3
1,874,520	+				-0.7
1,874,520	+				-0.1
1,874,520	+				-0.5
1,874,521	-				-1.5
1,874,521	-				-1.2
1,874,521	-				-0.9
1,874,521	-				-0.2
1,874,555	+				-1.3
1,874,555	+				-0.5
1,874,555	+				-0.2
1,874,555	+				-0.4
1,874,556	-				-1.7
1,874,557	+				-1.5
1,874,557	+				-0.9
1,874,557	+				-0.7
1,874,557	+				-0.9
1,874,558	-				-2.3
1,874,558	-				+0.1
1,874,558	-				-0.2
1,874,558	-				-0.2
1,874,560	+				-0.9
1,874,561	-				-0.0
1,874,561	-				-2.1
1,874,561	-				-0.5
1,874,650	+		IAI47_08880	0.19	-0.2
1,874,650	+		IAI47_08880	0.19	-0.6
1,874,650	+		IAI47_08880	0.19	-0.7
1,874,650	+		IAI47_08880	0.19	+0.1
1,874,651	-		IAI47_08880	0.19	-1.2
1,874,651	-		IAI47_08880	0.19	-0.5
1,874,724	+		IAI47_08880	0.29	-2.5
1,874,755	+		IAI47_08880	0.34	+0.1
1,874,755	+		IAI47_08880	0.34	-0.3
1,874,756	-		IAI47_08880	0.34	-0.2
1,874,756	-		IAI47_08880	0.34	-0.2
1,874,878	+		IAI47_08880	0.51	+0.7
1,874,878	+		IAI47_08880	0.51	-0.5
1,874,933	+		IAI47_08880	0.58	-1.3
1,874,934	-		IAI47_08880	0.58	-1.3
1,874,934	-		IAI47_08880	0.58	-0.3
1,874,934	-		IAI47_08880	0.58	-1.3
1,874,994	-		IAI47_08880	0.67	-1.2
1,875,027	-		IAI47_08880	0.71	-2.2
1,875,027	-		IAI47_08880	0.71	-0.2
1,875,027	-		IAI47_08880	0.71	-0.6
1,875,027	-		IAI47_08880	0.71	-1.7
1,875,027	-		IAI47_08880	0.71	+0.1
1,875,027	-		IAI47_08880	0.71	+1.1
1,875,028	+		IAI47_08880	0.72	-2.0
1,875,028	+		IAI47_08880	0.72	+0.4
1,875,028	+		IAI47_08880	0.72	-1.1
1,875,028	+		IAI47_08880	0.72	-0.2
1,875,028	+		IAI47_08880	0.72	-1.4
1,875,028	+		IAI47_08880	0.72	-1.9
1,875,028	+		IAI47_08880	0.72	-0.9
1,875,029	-		IAI47_08880	0.72	+0.1
1,875,029	-		IAI47_08880	0.72	-0.7
1,875,047	+		IAI47_08880	0.74	-0.3
1,875,047	+		IAI47_08880	0.74	-0.2
1,875,047	+		IAI47_08880	0.74	+1.1
1,875,048	-		IAI47_08880	0.74	-0.1
1,875,089	+		IAI47_08880	0.80	-0.7
1,875,089	+		IAI47_08880	0.80	-1.5
1,875,094	+		IAI47_08880	0.81	-1.8
1,875,094	+		IAI47_08880	0.81	+0.1
1,875,094	+		IAI47_08880	0.81	-0.9
1,875,094	+		IAI47_08880	0.81	-1.2
1,875,094	+		IAI47_08880	0.81	-0.0
1,875,095	-		IAI47_08880	0.81	+0.3
1,875,158	+		IAI47_08880	0.90	-0.5
1,875,158	+		IAI47_08880	0.90	-0.7
1,875,158	+		IAI47_08880	0.90	-0.7
1,875,158	+		IAI47_08880	0.90	-0.6
1,875,158	+		IAI47_08880	0.90	-0.7
1,875,158	+		IAI47_08880	0.90	-2.2
1,875,158	+		IAI47_08880	0.90	-1.5
1,875,158	+		IAI47_08880	0.90	-0.9
1,875,159	-		IAI47_08880	0.90	-1.9
1,875,159	-		IAI47_08880	0.90	-1.5
1,875,159	-		IAI47_08880	0.90	+0.1
1,875,159	-		IAI47_08880	0.90	-1.5
1,875,159	-		IAI47_08880	0.90	-0.2
1,875,159	-		IAI47_08880	0.90	-0.6
1,875,159	-		IAI47_08880	0.90	-0.9
1,875,267	-				-0.0
1,875,267	-				-0.5
1,875,419	+				+0.1
1,875,448	+		IAI47_08885	0.10	+1.4
1,875,448	+		IAI47_08885	0.10	+0.5
1,875,449	-		IAI47_08885	0.10	+3.9
1,875,449	-		IAI47_08885	0.10	-0.5
1,875,490	+		IAI47_08885	0.13	+1.1
1,875,490	+		IAI47_08885	0.13	+0.5
1,875,503	+		IAI47_08885	0.14	+0.6
1,875,503	+		IAI47_08885	0.14	+1.3
1,875,503	+		IAI47_08885	0.14	-0.9
1,875,504	-		IAI47_08885	0.14	+1.5
1,875,516	-		IAI47_08885	0.15	+0.9
1,875,526	+		IAI47_08885	0.15	+1.3
1,875,526	+		IAI47_08885	0.15	+0.9
1,875,527	-		IAI47_08885	0.15	+1.3
1,875,527	-		IAI47_08885	0.15	-2.7
1,875,595	+		IAI47_08885	0.20	+0.9
1,875,596	-		IAI47_08885	0.20	+2.9
1,875,596	-		IAI47_08885	0.20	+2.7
1,875,596	-		IAI47_08885	0.20	+1.2
1,875,599	+		IAI47_08885	0.20	+1.1
1,875,599	+		IAI47_08885	0.20	+0.9
1,875,600	-		IAI47_08885	0.20	-1.5
1,875,600	-		IAI47_08885	0.20	+0.4
1,875,671	+		IAI47_08885	0.25	-0.1
1,875,671	+		IAI47_08885	0.25	+0.7
1,875,814	-		IAI47_08885	0.34	+1.0
1,875,830	+		IAI47_08885	0.35	+0.9
1,875,831	-		IAI47_08885	0.35	+1.3
1,875,838	+		IAI47_08885	0.36	+1.3
1,875,838	+		IAI47_08885	0.36	+0.2
1,875,838	+		IAI47_08885	0.36	+1.1
1,875,839	-		IAI47_08885	0.36	+0.1
1,875,839	-		IAI47_08885	0.36	+0.9
1,875,851	+		IAI47_08885	0.36	+0.7
1,875,851	+		IAI47_08885	0.36	+1.0
1,875,852	-		IAI47_08885	0.37	+1.0
1,875,853	+		IAI47_08885	0.37	+0.5
1,875,854	-		IAI47_08885	0.37	+1.1
1,875,854	-		IAI47_08885	0.37	+0.1
1,875,902	+		IAI47_08885	0.40	-0.5
1,875,902	+		IAI47_08885	0.40	+0.0
1,875,902	+		IAI47_08885	0.40	+0.9
1,875,903	-		IAI47_08885	0.40	+0.7
1,875,903	-		IAI47_08885	0.40	+1.3
1,875,903	-		IAI47_08885	0.40	+1.3
1,875,931	+		IAI47_08885	0.42	+0.3
1,875,932	-		IAI47_08885	0.42	+0.9
1,875,932	-		IAI47_08885	0.42	+0.6
1,875,932	-		IAI47_08885	0.42	+1.0
1,875,932	-		IAI47_08885	0.42	-0.2
1,875,952	+		IAI47_08885	0.43	+0.9
1,875,952	+		IAI47_08885	0.43	+0.4
1,875,952	+		IAI47_08885	0.43	+1.4
1,875,952	+		IAI47_08885	0.43	+0.8
1,875,953	-		IAI47_08885	0.43	+1.9
1,875,953	-		IAI47_08885	0.43	+0.1
1,875,953	-		IAI47_08885	0.43	-0.3
1,875,953	-		IAI47_08885	0.43	+0.7
1,875,953	-		IAI47_08885	0.43	+0.1
1,876,020	+		IAI47_08885	0.47	-0.0
1,876,020	+		IAI47_08885	0.47	+0.9
1,876,020	+		IAI47_08885	0.47	+0.5
1,876,020	+		IAI47_08885	0.47	+1.1
1,876,021	-		IAI47_08885	0.48	+0.1
1,876,021	-		IAI47_08885	0.48	+0.7
1,876,090	+		IAI47_08885	0.52	+0.5
1,876,090	+		IAI47_08885	0.52	+0.1
1,876,090	+		IAI47_08885	0.52	+1.3
1,876,091	-		IAI47_08885	0.52	+1.1
1,876,185	+		IAI47_08885	0.58	+0.6
1,876,185	+		IAI47_08885	0.58	+1.2
1,876,185	+		IAI47_08885	0.58	+1.3
1,876,186	-		IAI47_08885	0.58	-0.1
1,876,186	-		IAI47_08885	0.58	+1.9
1,876,186	-		IAI47_08885	0.58	+2.1
1,876,201	+		IAI47_08885	0.59	+1.4
1,876,201	+		IAI47_08885	0.59	+1.0
1,876,262	+		IAI47_08885	0.63	-0.3
1,876,262	+		IAI47_08885	0.63	+1.9
1,876,262	+		IAI47_08885	0.63	+2.1
1,876,265	-		IAI47_08885	0.63	+1.8
1,876,279	+		IAI47_08885	0.64	+0.8
1,876,280	-		IAI47_08885	0.64	+0.8
1,876,280	-		IAI47_08885	0.64	-0.0
1,876,288	-		IAI47_08885	0.65	+1.0
1,876,288	-		IAI47_08885	0.65	+2.3
1,876,308	+		IAI47_08885	0.66	-0.7
1,876,308	+		IAI47_08885	0.66	+0.1
1,876,355	+		IAI47_08885	0.69	+0.7
1,876,356	-		IAI47_08885	0.69	+1.2
1,876,357	+		IAI47_08885	0.69	+0.2
1,876,357	+		IAI47_08885	0.69	+1.1
1,876,357	+		IAI47_08885	0.69	+0.3
1,876,357	+		IAI47_08885	0.69	+1.7
1,876,357	+		IAI47_08885	0.69	+0.6
1,876,357	+		IAI47_08885	0.69	+0.8
1,876,358	-		IAI47_08885	0.69	+0.0
1,876,420	+		IAI47_08885	0.74	+1.0
1,876,421	-		IAI47_08885	0.74	+0.6
1,876,421	-		IAI47_08885	0.74	+1.0
1,876,424	+		IAI47_08885	0.74	+1.0
1,876,424	+		IAI47_08885	0.74	+0.1
1,876,425	-		IAI47_08885	0.74	+1.2
1,876,450	+		IAI47_08885	0.75	+1.5
1,876,450	+		IAI47_08885	0.75	+0.3
1,876,451	-		IAI47_08885	0.76	-0.0
1,876,451	-		IAI47_08885	0.76	+1.0
1,876,451	-		IAI47_08885	0.76	+1.4
1,876,508	-		IAI47_08885	0.79	+1.7
1,876,508	-		IAI47_08885	0.79	+0.5
1,876,508	-		IAI47_08885	0.79	-0.9
1,876,544	-		IAI47_08885	0.82	-1.5
1,876,544	-		IAI47_08885	0.82	+3.1
1,876,544	-		IAI47_08885	0.82	+1.3
1,876,568	+		IAI47_08885	0.83	+0.9
1,876,568	+		IAI47_08885	0.83	+0.7
1,876,568	+		IAI47_08885	0.83	+0.6
1,876,568	+		IAI47_08885	0.83	+0.8
1,876,568	+				-3.3
1,876,568	+		IAI47_08885	0.83	+1.1
1,876,568	+		IAI47_08885	0.83	+0.5
1,876,568	+		IAI47_08885	0.83	+2.5
1,876,568	+		IAI47_08885	0.83	+1.1
1,876,569	-		IAI47_08885	0.83	+1.8
1,876,569	-		IAI47_08885	0.83	+1.3
1,876,569	-		IAI47_08885	0.83	+1.0
1,876,569	-		IAI47_08885	0.83	+0.3
1,876,569	-		IAI47_08885	0.83	+0.5
1,876,569	-		IAI47_08885	0.83	+1.1
1,876,569	-		IAI47_08885	0.83	+0.4
1,876,569	-		IAI47_08885	0.83	+0.8
1,876,569	-		IAI47_08885	0.83	+2.5
1,876,569	-		IAI47_08885	0.83	+1.2
1,876,571	-		IAI47_08885	0.83	+1.4
1,876,571	-		IAI47_08885	0.83	+1.3
1,876,571	-		IAI47_08885	0.83	+2.4
1,876,571	-		IAI47_08885	0.83	+0.6
1,876,618	+		IAI47_08885	0.86	+1.9
1,876,618	+		IAI47_08885	0.86	+2.5
1,876,618	+		IAI47_08885	0.86	+2.4
1,876,618	+		IAI47_08885	0.86	+2.4
1,876,619	-		IAI47_08885	0.86	+1.1
1,876,619	-		IAI47_08885	0.86	+1.3
1,876,619	-		IAI47_08885	0.86	+1.8
1,876,619	-		IAI47_08885	0.86	+0.6
1,876,619	-		IAI47_08885	0.86	+1.8
1,876,645	+		IAI47_08885	0.88	+0.7
1,876,646	-		IAI47_08885	0.88	+1.7
1,876,646	-		IAI47_08885	0.88	-0.3
1,876,697	+				+2.4
1,876,698	-				-0.1
1,876,698	-				+0.3
1,876,698	-				-1.5
1,876,698	-				+0.1
1,876,698	-				-0.4
1,876,709	-				-0.7
1,876,715	+				+0.4
1,876,738	-				+2.1
1,876,738	-				+1.0
1,876,738	-				+1.7
1,876,741	+				+0.7
1,876,741	+				+0.4
1,876,741	+				+0.4
1,876,826	+				-0.4
1,876,826	+				+0.5
1,876,826	+				+2.6
1,876,827	-				-1.2
1,876,883	+				+0.5
1,876,884	-				-0.6
1,876,998	+				+0.1
1,877,044	-				-0.9
1,877,044	-				-0.4
1,877,049	-				-1.5
1,877,060	+				-0.9
1,877,060	+				+0.1
1,877,061	-				+0.5
1,877,142	-				-0.5
1,877,142	-				+0.6
1,877,142	-				-0.2
1,877,170	-				+1.1
1,877,184	-				-0.0
1,877,203	-				+0.8
1,877,246	+				-0.9
1,877,268	-				+0.5
1,877,280	+				-1.3
1,877,281	-				-1.7
1,877,281	-				+0.4
1,877,281	-				+1.4
1,877,291	+				-0.5
1,877,292	-				-1.3
1,877,303	-				-0.7
1,877,303	-				-0.5
1,877,310	+				+1.1
1,877,310	+				+0.1
1,877,310	+				+0.0
1,877,311	-				-0.3
1,877,311	-				-0.1
1,877,311	-				-1.6
1,877,330	+				-1.2
1,877,330	+				+0.8
1,877,330	+				+0.9
1,877,330	+				-1.4
1,877,330	+				-0.5
1,877,330	+				-2.9
1,877,330	+				-0.1
1,877,330	+				-1.8
1,877,330	+				+1.1
1,877,330	+				-2.2
1,877,330	+				-0.2
1,877,330	+				-0.3
1,877,330	+				-0.5
1,877,330	+				-0.2
1,877,330	+				-1.0
1,877,331	-				-0.4
1,877,331	-				-1.5
1,877,331	-				-0.6
1,877,331	-				-0.1
1,877,331	-				+0.1
1,877,331	-				+0.1
1,877,331	-				+1.3
1,877,331	-				+0.1
1,877,331	-				+1.1
1,877,331	-				-0.0
1,877,331	-				-0.8
1,877,331	-				-1.9
1,877,341	+				+0.9
1,877,383	-				-1.3
1,877,383	-				-0.2
1,877,482	-		IAI47_08890	0.12	-1.6
1,877,558	+		IAI47_08890	0.17	+2.0
1,877,612	+		IAI47_08890	0.22	+0.1
1,877,612	+		IAI47_08890	0.22	-0.4
1,877,612	+		IAI47_08890	0.22	-1.3
1,877,613	-		IAI47_08890	0.22	+1.4
1,877,613	-		IAI47_08890	0.22	+0.1
1,877,631	+		IAI47_08890	0.23	+0.2
1,877,632	-		IAI47_08890	0.23	-1.2
1,877,657	-		IAI47_08890	0.25	-2.0
1,877,657	-		IAI47_08890	0.25	-0.4
1,877,670	+		IAI47_08890	0.26	-0.4
1,877,718	+		IAI47_08890	0.30	+0.5
1,877,719	-		IAI47_08890	0.30	-0.3
1,877,719	-		IAI47_08890	0.30	+0.1
1,877,743	+		IAI47_08890	0.32	-1.1
1,877,743	+		IAI47_08890	0.32	-0.2
1,877,743	+		IAI47_08890	0.32	+2.4
1,877,744	-		IAI47_08890	0.32	+0.1
1,877,744	-		IAI47_08890	0.32	-1.1
1,877,744	-		IAI47_08890	0.32	+0.7
1,877,744	-		IAI47_08890	0.32	+0.0
1,877,789	+		IAI47_08890	0.35	-0.5
1,877,789	+		IAI47_08890	0.35	-1.4
1,877,789	+		IAI47_08890	0.35	+0.7
1,877,790	-		IAI47_08890	0.35	-0.2
1,877,790	-		IAI47_08890	0.35	-1.5
1,877,790	-		IAI47_08890	0.35	-0.1
1,877,790	-		IAI47_08890	0.35	-0.6
1,877,820	+		IAI47_08890	0.38	-0.6
1,877,820	+		IAI47_08890	0.38	+0.1