Strain Fitness in Pantoea sp. MT58 around IAI47_08785

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
1,856,380	-		IAI47_08780	0.51	+0.5
1,856,380	-		IAI47_08780	0.51	+1.3
1,856,380	-		IAI47_08780	0.51	+1.1
1,856,382	-		IAI47_08780	0.51	+0.1
1,856,382	-		IAI47_08780	0.51	-0.2
1,856,382	-		IAI47_08780	0.51	-0.1
1,856,382	-		IAI47_08780	0.51	+0.9
1,856,388	+		IAI47_08780	0.51	-0.8
1,856,388	+		IAI47_08780	0.51	+0.1
1,856,389	-		IAI47_08780	0.51	+0.4
1,856,466	-		IAI47_08780	0.56	-0.1
1,856,466	-		IAI47_08780	0.56	+0.3
1,856,466	-		IAI47_08780	0.56	+0.6
1,856,472	+		IAI47_08780	0.57	-0.5
1,856,472	+		IAI47_08780	0.57	-0.4
1,856,472	+		IAI47_08780	0.57	-0.4
1,856,473	-		IAI47_08780	0.57	+0.4
1,856,473	-		IAI47_08780	0.57	-0.3
1,856,507	+		IAI47_08780	0.59	+0.3
1,856,507	+		IAI47_08780	0.59	+0.4
1,856,507	+		IAI47_08780	0.59	-0.7
1,856,507	+		IAI47_08780	0.59	+1.4
1,856,507	+		IAI47_08780	0.59	+1.8
1,856,507	+		IAI47_08780	0.59	-0.9
1,856,508	-		IAI47_08780	0.59	-0.0
1,856,508	-		IAI47_08780	0.59	+1.9
1,856,508	-		IAI47_08780	0.59	-2.2
1,856,508	-		IAI47_08780	0.59	-1.4
1,856,553	+		IAI47_08780	0.62	+0.3
1,856,554	-		IAI47_08780	0.62	+1.4
1,856,554	-		IAI47_08780	0.62	-0.6
1,856,558	+		IAI47_08780	0.62	+0.4
1,856,558	+		IAI47_08780	0.62	+0.1
1,856,559	-		IAI47_08780	0.62	+0.3
1,856,559	-		IAI47_08780	0.62	+0.1
1,856,583	+		IAI47_08780	0.64	+0.1
1,856,583	+		IAI47_08780	0.64	-0.2
1,856,584	-		IAI47_08780	0.64	+0.1
1,856,584	-		IAI47_08780	0.64	+0.4
1,856,608	+		IAI47_08780	0.65	+0.1
1,856,627	+		IAI47_08780	0.66	+0.9
1,856,627	+		IAI47_08780	0.66	+1.1
1,856,627	+		IAI47_08780	0.66	+0.7
1,856,627	+		IAI47_08780	0.66	-0.5
1,856,628	-		IAI47_08780	0.67	-0.3
1,856,628	-		IAI47_08780	0.67	-0.3
1,856,628	-		IAI47_08780	0.67	+1.7
1,856,649	+		IAI47_08780	0.68	+0.4
1,856,650	-		IAI47_08780	0.68	+0.1
1,856,653	+		IAI47_08780	0.68	-0.6
1,856,653	+		IAI47_08780	0.68	+0.6
1,856,729	+		IAI47_08780	0.73	+2.4
1,856,729	+		IAI47_08780	0.73	+1.1
1,856,729	+		IAI47_08780	0.73	-0.8
1,856,730	-		IAI47_08780	0.73	-0.2
1,856,730	-		IAI47_08780	0.73	-0.9
1,856,730	-		IAI47_08780	0.73	+0.6
1,856,730	-		IAI47_08780	0.73	+0.4
1,856,730	-		IAI47_08780	0.73	-0.9
1,856,730	-		IAI47_08780	0.73	-0.4
1,856,751	+		IAI47_08780	0.74	-0.3
1,856,751	+		IAI47_08780	0.74	+0.1
1,856,751	+		IAI47_08780	0.74	-0.7
1,856,752	-		IAI47_08780	0.74	+0.7
1,856,752	-		IAI47_08780	0.74	+1.0
1,856,752	-		IAI47_08780	0.74	+0.1
1,856,752	-		IAI47_08780	0.74	+0.5
1,856,752	-		IAI47_08780	0.74	-0.5
1,856,763	+		IAI47_08780	0.75	-0.5
1,856,763	+		IAI47_08780	0.75	-1.0
1,856,764	-		IAI47_08780	0.75	+0.3
1,856,764	-		IAI47_08780	0.75	-2.7
1,856,764	-		IAI47_08780	0.75	+1.4
1,856,765	+		IAI47_08780	0.75	-0.1
1,856,765	+		IAI47_08780	0.75	-0.3
1,856,765	+		IAI47_08780	0.75	+1.3
1,856,765	+		IAI47_08780	0.75	+0.1
1,856,765	+		IAI47_08780	0.75	-0.1
1,856,765	+		IAI47_08780	0.75	-0.0
1,856,765	+		IAI47_08780	0.75	-1.1
1,856,765	+		IAI47_08780	0.75	-0.6
1,856,766	-		IAI47_08780	0.75	+0.1
1,856,766	-		IAI47_08780	0.75	-0.4
1,856,766	-		IAI47_08780	0.75	-0.3
1,856,813	+		IAI47_08780	0.78	+0.5
1,856,828	+		IAI47_08780	0.79	-0.4
1,856,828	+		IAI47_08780	0.79	+1.1
1,856,828	+		IAI47_08780	0.79	-0.1
1,856,829	-		IAI47_08780	0.79	+0.1
1,856,833	+		IAI47_08780	0.80	-1.2
1,856,833	+		IAI47_08780	0.80	+0.0
1,856,833	+		IAI47_08780	0.80	+0.2
1,856,834	-		IAI47_08780	0.80	-0.1
1,856,834	-		IAI47_08780	0.80	-0.2
1,856,834	-		IAI47_08780	0.80	-0.4
1,856,834	-		IAI47_08780	0.80	+0.4
1,856,940	+		IAI47_08780	0.87	+0.1
1,856,941	-		IAI47_08780	0.87	+0.4
1,856,941	-		IAI47_08780	0.87	+0.4
1,856,941	-		IAI47_08780	0.87	-0.9
1,856,941	-		IAI47_08780	0.87	+0.4
1,856,943	+		IAI47_08780	0.87	-0.4
1,856,943	+		IAI47_08780	0.87	-0.0
1,856,944	-		IAI47_08780	0.87	+0.8
1,856,988	+		IAI47_08780	0.90	+0.5
1,856,989	-		IAI47_08780	0.90	+0.9
1,856,997	+				+0.1
1,857,027	+				-0.6
1,857,027	+				-1.2
1,857,027	+				+1.0
1,857,027	+				-0.5
1,857,027	+				+0.9
1,857,028	-				+2.0
1,857,028	-				-0.5
1,857,067	+				+0.1
1,857,067	+				-1.4
1,857,067	+				+0.4
1,857,067	+				+1.1
1,857,068	-				-0.5
1,857,068	-				+0.4
1,857,068	-				-0.2
1,857,144	+				+0.1
1,857,144	+				+1.0
1,857,145	-				-1.1
1,857,145	-				-0.3
1,857,192	+				-0.1
1,857,200	+				+0.8
1,857,201	-				-0.6
1,857,201	-				-0.4
1,857,201	-				-2.1
1,857,203	+				-0.9
1,857,223	+				+0.7
1,857,223	+				+0.3
1,857,224	-				+1.1
1,857,224	-				-0.5
1,857,224	-				+0.4
1,857,224	-				+0.7
1,857,294	+				-0.6
1,857,294	+				+0.1
1,857,300	+				-0.3
1,857,337	-				-1.0
1,857,352	+				+1.1
1,857,352	+				-0.2
1,857,357	-				-0.2
1,857,393	+				-1.5
1,857,393	+				-0.9
1,857,394	-				-1.2
1,857,394	-				+1.1
1,857,426	-				-1.2
1,857,426	-				-1.3
1,857,429	+				-1.5
1,857,429	+				-1.5
1,857,430	-				-1.1
1,857,438	+				-0.9
1,857,438	+				-1.9
1,857,439	-				-3.3
1,857,439	-				-2.7
1,857,439	-				-3.0
1,857,455	+				-1.5
1,857,455	+				-1.8
1,857,455	+				-1.6
1,857,455	+				-2.5
1,857,455	+				-1.5
1,857,455	+				+0.1
1,857,455	+				-2.7
1,857,455	+				-0.9
1,857,456	-				-1.5
1,857,456	-				-1.9
1,857,469	-				-0.9
1,857,474	+				-1.9
1,857,474	+				-0.9
1,857,528	+		IAI47_08785	0.11	-1.9
1,857,549	+		IAI47_08785	0.13	-2.7
1,857,549	+		IAI47_08785	0.13	-1.1
1,857,550	-		IAI47_08785	0.13	-0.9
1,857,550	-		IAI47_08785	0.13	-0.9
1,857,550	-		IAI47_08785	0.13	-1.5
1,857,604	+		IAI47_08785	0.17	-2.2
1,857,604	+		IAI47_08785	0.17	-1.1
1,857,747	+		IAI47_08785	0.27	+1.1
1,857,748	-		IAI47_08785	0.27	-0.9
1,857,765	-		IAI47_08785	0.28	-0.9
1,857,765	-		IAI47_08785	0.28	-1.1
1,857,769	+		IAI47_08785	0.29	-1.9
1,857,769	+		IAI47_08785	0.29	-1.5
1,857,769	+		IAI47_08785	0.29	-1.4
1,857,769	+		IAI47_08785	0.29	-1.6
1,857,770	-		IAI47_08785	0.29	-2.2
1,857,842	+		IAI47_08785	0.34	-2.5
1,857,842	+		IAI47_08785	0.34	-2.4
1,857,843	-		IAI47_08785	0.34	-2.5
1,857,843	-		IAI47_08785	0.34	-0.7
1,857,843	-		IAI47_08785	0.34	-1.5
1,857,845	+		IAI47_08785	0.34	+0.3
1,857,845	+		IAI47_08785	0.34	-2.3
1,857,846	-		IAI47_08785	0.34	-1.9
1,857,846	-		IAI47_08785	0.34	-1.7
1,857,941	+		IAI47_08785	0.41	-1.5
1,857,941	+		IAI47_08785	0.41	-2.8
1,857,941	+		IAI47_08785	0.41	-1.9
1,857,941	+		IAI47_08785	0.41	+0.5
1,857,941	+		IAI47_08785	0.41	-1.9
1,857,941	+		IAI47_08785	0.41	-2.2
1,857,941	+		IAI47_08785	0.41	+0.7
1,857,941	+		IAI47_08785	0.41	-1.8
1,857,941	+		IAI47_08785	0.41	-2.5
1,857,941	+		IAI47_08785	0.41	-0.4
1,857,941	+		IAI47_08785	0.41	-1.7
1,857,942	-		IAI47_08785	0.41	+0.1
1,857,942	-		IAI47_08785	0.41	-1.9
1,857,942	-		IAI47_08785	0.41	-0.3
1,857,942	-		IAI47_08785	0.41	-2.9
1,857,942	-		IAI47_08785	0.41	-0.9
1,857,942	-		IAI47_08785	0.41	-2.0
1,857,942	-		IAI47_08785	0.41	-2.6
1,857,942	-		IAI47_08785	0.41	-2.5
1,857,942	-		IAI47_08785	0.41	-2.2
1,857,942	-		IAI47_08785	0.41	-0.9
1,857,945	+		IAI47_08785	0.42	-1.5
1,857,945	+		IAI47_08785	0.42	-0.9
1,857,945	+		IAI47_08785	0.42	-1.5
1,857,945	+		IAI47_08785	0.42	-2.1
1,857,945	+		IAI47_08785	0.42	-1.1
1,857,945	+		IAI47_08785	0.42	-1.5
1,857,945	+		IAI47_08785	0.42	-0.9
1,857,946	-		IAI47_08785	0.42	-0.5
1,857,946	-		IAI47_08785	0.42	-2.9
1,857,946	-		IAI47_08785	0.42	-1.5
1,857,946	-		IAI47_08785	0.42	+2.7
1,857,946	-		IAI47_08785	0.42	-0.9
1,857,946	-		IAI47_08785	0.42	-0.9
1,857,946	-		IAI47_08785	0.42	-1.9
1,857,946	-		IAI47_08785	0.42	-1.5
1,857,946	-		IAI47_08785	0.42	-1.3
1,857,946	-		IAI47_08785	0.42	-0.7
1,857,946	-		IAI47_08785	0.42	-2.5
1,857,946	-		IAI47_08785	0.42	-2.6
1,857,948	+		IAI47_08785	0.42	-0.9
1,857,949	-		IAI47_08785	0.42	-2.7
1,857,987	+		IAI47_08785	0.45	-1.2
1,857,987	+		IAI47_08785	0.45	-2.8
1,857,988	-		IAI47_08785	0.45	-1.5
1,858,118	+		IAI47_08785	0.54	-2.7
1,858,118	+		IAI47_08785	0.54	-0.6
1,858,118	+		IAI47_08785	0.54	-1.9
1,858,119	-		IAI47_08785	0.54	-3.0
1,858,124	+		IAI47_08785	0.55	-2.2
1,858,124	+		IAI47_08785	0.55	-1.9
1,858,124	+		IAI47_08785	0.55	-2.6
1,858,124	+		IAI47_08785	0.55	-0.5
1,858,124	+		IAI47_08785	0.55	+1.1
1,858,124	+		IAI47_08785	0.55	-0.9
1,858,124	+		IAI47_08785	0.55	-1.3
1,858,124	+		IAI47_08785	0.55	-0.7
1,858,124	+		IAI47_08785	0.55	-0.9
1,858,125	-		IAI47_08785	0.55	+0.5
1,858,125	-		IAI47_08785	0.55	-2.5
1,858,125	-		IAI47_08785	0.55	-1.8
1,858,125	-		IAI47_08785	0.55	-2.5
1,858,125	-		IAI47_08785	0.55	-2.9
1,858,125	-		IAI47_08785	0.55	-0.7
1,858,125	-		IAI47_08785	0.55	-1.7
1,858,125	-		IAI47_08785	0.55	-1.3
1,858,125	-		IAI47_08785	0.55	-1.5
1,858,310	+		IAI47_08785	0.68	-2.2
1,858,310	+		IAI47_08785	0.68	-1.5
1,858,311	-		IAI47_08785	0.68	-1.1
1,858,311	-		IAI47_08785	0.68	-0.9
1,858,311	-		IAI47_08785	0.68	-0.9
1,858,313	+		IAI47_08785	0.69	-1.1
1,858,313	+		IAI47_08785	0.69	-0.3
1,858,313	+		IAI47_08785	0.69	-2.2
1,858,313	+		IAI47_08785	0.69	-3.5
1,858,313	+		IAI47_08785	0.69	-2.1
1,858,313	+		IAI47_08785	0.69	-1.4
1,858,313	+		IAI47_08785	0.69	-2.6
1,858,313	+		IAI47_08785	0.69	-2.2
1,858,313	+		IAI47_08785	0.69	+0.1
1,858,313	+		IAI47_08785	0.69	-1.8
1,858,313	+		IAI47_08785	0.69	-2.1
1,858,313	+		IAI47_08785	0.69	-2.1
1,858,313	+		IAI47_08785	0.69	+0.1
1,858,314	-		IAI47_08785	0.69	-2.2
1,858,314	-		IAI47_08785	0.69	+0.1
1,858,314	-		IAI47_08785	0.69	-2.1
1,858,314	-		IAI47_08785	0.69	-1.5
1,858,314	-		IAI47_08785	0.69	-3.3
1,858,314	-		IAI47_08785	0.69	-1.1
1,858,314	-		IAI47_08785	0.69	-0.5
1,858,314	-		IAI47_08785	0.69	-3.1
1,858,314	-		IAI47_08785	0.69	+0.1
1,858,314	-		IAI47_08785	0.69	-1.2
1,858,314	-		IAI47_08785	0.69	+0.1
1,858,314	-		IAI47_08785	0.69	-0.6
1,858,314	-		IAI47_08785	0.69	-0.4
1,858,314	-		IAI47_08785	0.69	-1.9
1,858,314	-		IAI47_08785	0.69	-1.9
1,858,314	-		IAI47_08785	0.69	-0.5
1,858,479	+		IAI47_08785	0.81	-2.5
1,858,479	+		IAI47_08785	0.81	-0.3
1,858,479	+		IAI47_08785	0.81	-0.3
1,858,480	-		IAI47_08785	0.81	-1.6
1,858,480	-		IAI47_08785	0.81	-2.2
1,858,482	+		IAI47_08785	0.81	-0.9
1,858,482	+		IAI47_08785	0.81	-1.5
1,858,482	+		IAI47_08785	0.81	-2.2
1,858,482	+		IAI47_08785	0.81	-1.8
1,858,483	-		IAI47_08785	0.81	-1.5
1,858,503	+		IAI47_08785	0.83	-1.5
1,858,504	-		IAI47_08785	0.83	-1.5
1,858,504	-		IAI47_08785	0.83	-1.1
1,858,556	+		IAI47_08785	0.86	-3.7
1,858,557	+		IAI47_08785	0.87	-2.8
1,858,557	+		IAI47_08785	0.87	-0.4
1,858,557	+		IAI47_08785	0.87	-2.6
1,858,592	+		IAI47_08785	0.89	-2.5
1,858,592	+		IAI47_08785	0.89	+0.1
1,858,592	+		IAI47_08785	0.89	-1.6
1,858,593	-		IAI47_08785	0.89	-0.5
1,858,593	-		IAI47_08785	0.89	-1.5
1,858,593	-		IAI47_08785	0.89	-1.1
1,858,593	-		IAI47_08785	0.89	-2.3
1,858,593	-		IAI47_08785	0.89	-1.9
1,858,600	+		IAI47_08785	0.90	-1.3
1,858,600	+		IAI47_08785	0.90	-1.9
1,858,600	+		IAI47_08785	0.90	-1.5
1,858,601	-		IAI47_08785	0.90	-2.6
1,858,662	+				-0.6
1,858,664	-				-1.4
1,858,686	+				-1.9
1,858,735	-				-2.9
1,858,735	-				-1.6
1,858,760	+				-1.9
1,858,761	-				+1.4
1,858,784	+				-0.5
1,858,795	+				+0.1
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