Strain Fitness in Pantoea sp. MT58 around IAI47_08440

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
1,786,362	-				-3.7
1,786,378	+				-0.5
1,786,378	+				-0.3
1,786,378	+				+1.4
1,786,378	+				+0.1
1,786,378	+				+0.8
1,786,378	+				-0.3
1,786,378	+				+1.4
1,786,378	+				-0.0
1,786,378	+				+0.5
1,786,379	-				-1.5
1,786,379	-				-0.9
1,786,380	+				-0.2
1,786,380	+				-0.4
1,786,380	+				+0.7
1,786,380	+				+0.3
1,786,380	+				-1.3
1,786,380	+				-0.7
1,786,380	+				-1.9
1,786,380	+				+0.4
1,786,381	-				-1.9
1,786,381	-				-1.5
1,786,402	+				-0.3
1,786,402	+				+0.8
1,786,419	+				+1.1
1,786,444	+				+1.2
1,786,444	+				+0.1
1,786,444	+				+0.1
1,786,444	+				+1.1
1,786,444	+				-0.9
1,786,444	+				+0.7
1,786,444	+				+1.7
1,786,445	-				-0.9
1,786,445	-				-2.5
1,786,452	+				+0.1
1,786,452	+				-0.4
1,786,452	+				-0.2
1,786,453	-				+2.1
1,786,501	+				+0.6
1,786,512	+				+1.4
1,786,512	+				+2.1
1,786,512	+				-0.5
1,786,512	+				+0.5
1,786,513	-				-2.2
1,786,560	+				-0.5
1,786,597	+				-0.2
1,786,597	+				-0.3
1,786,597	+				-0.5
1,786,597	+				-0.7
1,786,597	+				-0.7
1,786,639	+				+0.1
1,786,639	+				+0.5
1,786,639	+				-0.1
1,786,841	+		IAI47_08435	0.35	+0.1
1,786,841	+		IAI47_08435	0.35	-0.9
1,786,906	+		IAI47_08435	0.43	-0.7
1,786,976	+		IAI47_08435	0.53	+1.2
1,787,078	+		IAI47_08435	0.67	+1.1
1,787,078	+		IAI47_08435	0.67	-0.6
1,787,078	+		IAI47_08435	0.67	-0.9
1,787,078	+		IAI47_08435	0.67	+0.8
1,787,078	+		IAI47_08435	0.67	-0.3
1,787,282	+				-0.6
1,787,282	+				-1.9
1,787,359	+				+1.1
1,787,359	+				-1.1
1,787,359	+				-1.7
1,787,359	+				+0.4
1,787,359	+				-0.3
1,787,359	+				+0.1
1,787,414	+		IAI47_08440	0.10	-2.7
1,787,415	-		IAI47_08440	0.10	-3.1
1,787,443	-		IAI47_08440	0.16	-1.5
1,787,471	+		IAI47_08440	0.21	-3.2
1,787,506	-		IAI47_08440	0.27	-1.5
1,787,893	+				+1.1
1,787,893	+				+2.0
1,787,893	+				-1.1
1,787,894	-				+1.7
1,787,923	-				-1.2
1,787,940	+				-0.2
1,787,945	+				-1.1
1,787,945	+				-0.4
1,787,948	-				+0.1
1,787,948	-				-2.9
1,787,966	+				+0.4
1,787,966	+				+1.5
1,787,966	+				+0.1
1,787,970	+				-1.5
1,787,970	+				-0.7
1,787,970	+				-0.9
1,787,970	+				-1.9
1,787,989	+				-0.9
1,787,989	+				-1.5
1,787,989	+				-1.9
1,787,989	+				-0.9
1,787,989	+				-2.5
1,788,008	+				-2.5
1,788,070	-		IAI47_08445	0.14	+0.1
1,788,422	+		IAI47_08445	0.71	-1.5
1,788,524	+		IAI47_08445	0.88	-2.9
1,788,643	+				-2.7
1,788,662	-				-1.5
1,788,662	-				-2.9
1,788,808	+		IAI47_08450	0.20	+0.1