Strain Fitness in Pantoea sp. MT58 around IAI47_06735

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
1,402,660	+		IAI47_06730	0.39	+0.2
1,402,660	+		IAI47_06730	0.39	-0.3
1,402,661	-		IAI47_06730	0.39	-1.0
1,402,661	-		IAI47_06730	0.39	-1.8
1,402,661	-		IAI47_06730	0.39	-1.4
1,402,671	+		IAI47_06730	0.40	+0.7
1,402,671	+		IAI47_06730	0.40	-1.7
1,402,683	+		IAI47_06730	0.41	-0.6
1,402,683	+		IAI47_06730	0.41	-0.6
1,402,683	+		IAI47_06730	0.41	-0.6
1,402,683	+		IAI47_06730	0.41	-0.2
1,402,683	+		IAI47_06730	0.41	-0.4
1,402,684	-		IAI47_06730	0.41	-0.4
1,402,684	-		IAI47_06730	0.41	-0.2
1,402,684	-		IAI47_06730	0.41	-0.6
1,402,697	-		IAI47_06730	0.42	-1.1
1,402,697	-		IAI47_06730	0.42	-0.6
1,402,773	+		IAI47_06730	0.49	-0.6
1,402,773	+		IAI47_06730	0.49	-0.2
1,402,774	-		IAI47_06730	0.49	-0.4
1,402,900	-		IAI47_06730	0.62	-0.8
1,402,988	+		IAI47_06730	0.70	-1.0
1,402,988	+		IAI47_06730	0.70	-0.6
1,402,989	-		IAI47_06730	0.70	-2.2
1,403,081	-		IAI47_06730	0.79	-2.8
1,403,096	+		IAI47_06730	0.80	+0.7
1,403,136	+		IAI47_06730	0.84	-1.4
1,403,140	+		IAI47_06730	0.85	+0.9
1,403,141	-		IAI47_06730	0.85	-0.8
1,403,209	+				+0.4
1,403,209	+				-0.7
1,403,209	+				-0.8
1,403,209	+				-1.3
1,403,210	-				-0.6
1,403,210	-				+0.6
1,403,210	-				-1.6
1,403,210	-				+1.2
1,403,215	+				-1.1
1,403,215	+				-0.3
1,403,215	+				+0.9
1,403,215	+				+0.5
1,403,216	-				-1.2
1,403,276	-				-0.4
1,403,330	+				-0.8
1,403,331	-				+0.3
1,403,334	+				+0.2
1,403,349	+				-1.3
1,403,349	+				+0.6
1,403,350	-				-0.8
1,403,365	+				-0.6
1,403,381	+				-0.8
1,403,381	+				-0.6
1,403,381	+				+0.0
1,403,382	-				+0.4
1,403,382	-				+1.0
1,403,385	+				+0.4
1,403,385	+				-0.4
1,403,386	-				-0.4
1,403,386	-				+0.6
1,403,430	+				+0.2
1,403,430	+				-0.6
1,403,430	+				-0.3
1,403,431	-				-0.1
1,403,431	-				+0.5
1,403,431	-				-0.4
1,403,431	-				+1.0
1,403,431	-				-0.1
1,403,489	+				-0.6
1,403,489	+				+0.4
1,403,489	+				+0.1
1,403,490	-				+0.0
1,403,490	-				-1.4
1,403,513	+				+0.2
1,403,513	+				-0.5
1,403,513	+				+0.1
1,403,514	-				+0.1
1,403,514	-				-2.5
1,403,514	-				-0.1
1,403,514	-				-0.0
1,403,540	+				-0.5
1,403,541	-				-0.4
1,403,590	+				-1.2
1,403,590	+				+0.8
1,403,591	-				+0.6
1,403,591	-				+1.1
1,403,591	-				-0.2
1,403,593	+				+0.5
1,403,594	-				+0.5
1,403,606	-				+0.2
1,403,606	-				+0.2
1,403,606	-				+1.6
1,403,606	-				+0.6
1,403,614	+				+1.0
1,403,614	+				+1.2
1,403,614	+				-1.4
1,403,614	+				-0.5
1,403,614	+				+0.2
1,403,615	-				-0.3
1,403,615	-				-0.1
1,403,615	-				+0.2
1,403,615	-				-0.0
1,403,615	-				+0.2
1,403,615	-				+0.2
1,403,615	-				-0.8
1,403,615	-				-0.2
1,403,632	+				+0.1
1,403,632	+				+0.6
1,403,633	-				-0.0
1,403,633	-				+0.5
1,403,633	-				-0.7
1,403,706	-				+0.9
1,403,706	-				-0.3
1,403,712	-		IAI47_06735	0.10	+0.9
1,403,712	-		IAI47_06735	0.10	+1.6
1,403,740	+		IAI47_06735	0.13	-0.5
1,403,740	+		IAI47_06735	0.13	+1.0
1,403,741	-		IAI47_06735	0.13	-0.1
1,403,778	+		IAI47_06735	0.17	+0.0
1,403,778	+		IAI47_06735	0.17	-0.8
1,403,779	-		IAI47_06735	0.17	-0.1
1,403,923	+		IAI47_06735	0.32	+0.9
1,403,924	-		IAI47_06735	0.32	-0.4
1,403,993	+		IAI47_06735	0.39	+0.2
1,403,993	+		IAI47_06735	0.39	-1.2
1,403,993	+		IAI47_06735	0.39	+0.5
1,403,993	+		IAI47_06735	0.39	+0.4
1,403,993	+		IAI47_06735	0.39	+1.7
1,403,994	-		IAI47_06735	0.39	-1.8
1,403,994	-		IAI47_06735	0.39	-0.3
1,403,994	-		IAI47_06735	0.39	-0.0
1,403,996	+		IAI47_06735	0.39	-0.3
1,403,996	+		IAI47_06735	0.39	-0.5
1,403,996	+		IAI47_06735	0.39	-0.1
1,403,996	+		IAI47_06735	0.39	+0.7
1,403,997	-		IAI47_06735	0.39	+0.4
1,403,997	-		IAI47_06735	0.39	+0.0
1,404,013	+		IAI47_06735	0.41	-0.4
1,404,013	+		IAI47_06735	0.41	-0.2
1,404,014	-		IAI47_06735	0.41	+0.7
1,404,014	-		IAI47_06735	0.41	+0.4
1,404,014	-		IAI47_06735	0.41	-0.6
1,404,014	-		IAI47_06735	0.41	+0.8
1,404,158	+		IAI47_06735	0.55	+0.4
1,404,158	+		IAI47_06735	0.55	-0.1
1,404,158	+		IAI47_06735	0.55	+0.2
1,404,158	+		IAI47_06735	0.55	+0.4
1,404,158	+		IAI47_06735	0.55	-1.1
1,404,158	+		IAI47_06735	0.55	-0.6
1,404,159	-		IAI47_06735	0.55	-0.2
1,404,159	-		IAI47_06735	0.55	+2.5
1,404,204	+		IAI47_06735	0.60	-0.6
1,404,215	-		IAI47_06735	0.61	+0.5
1,404,230	-		IAI47_06735	0.62	-0.3
1,404,247	+		IAI47_06735	0.64	+0.2
1,404,247	+		IAI47_06735	0.64	+0.2
1,404,247	+		IAI47_06735	0.64	+0.0
1,404,247	+		IAI47_06735	0.64	-1.4
1,404,248	-		IAI47_06735	0.64	+1.0
1,404,248	-		IAI47_06735	0.64	-1.7
1,404,412	+		IAI47_06735	0.81	+0.8
1,404,523	+				-0.4
1,404,523	+				-1.2
1,404,541	+				-0.3
1,404,542	-				-0.1
1,404,542	-				-0.3
1,404,560	+				-0.3
1,404,560	+				+0.4
1,404,560	+				+0.2
1,404,560	+				-0.6
1,404,560	+				+0.3
1,404,575	-				-0.3
1,404,602	+				+0.2
1,404,602	+				+1.2
1,404,602	+				+1.0
1,404,641	+				-0.5
1,404,641	+				-0.5
1,404,667	+				+1.7
1,404,672	+				+0.7
1,404,673	-				-0.3
1,404,706	+				+0.3
1,404,707	-				+0.5
1,404,751	-				-0.3
1,404,758	+				+0.8
1,404,759	-				+0.2
1,404,759	-				-0.0
1,404,763	-				+0.3
1,404,763	-				-0.5
1,404,763	-				-1.1
1,404,803	+				+0.0
1,404,804	-				-2.2
1,404,804	-				+0.2
1,404,837	-		IAI47_06740	0.11	-0.1
1,404,837	-		IAI47_06740	0.11	+0.6
1,404,839	+		IAI47_06740	0.11	+0.3
1,404,840	-		IAI47_06740	0.11	-0.7
1,404,855	+		IAI47_06740	0.12	+0.2
1,404,855	+		IAI47_06740	0.12	+0.4
1,404,859	+		IAI47_06740	0.12	+0.4
1,404,870	+		IAI47_06740	0.13	+0.7
1,404,879	+		IAI47_06740	0.14	-0.3
1,404,880	-		IAI47_06740	0.14	+2.0
1,404,909	+		IAI47_06740	0.16	+0.0
1,404,909	+		IAI47_06740	0.16	-0.8
1,404,910	-		IAI47_06740	0.16	+0.7
1,404,910	-		IAI47_06740	0.16	+0.7
1,404,963	-		IAI47_06740	0.19	-0.1
1,404,963	-		IAI47_06740	0.19	-0.1
1,404,971	+		IAI47_06740	0.20	-1.7
1,404,981	+		IAI47_06740	0.20	+0.2
1,404,982	-		IAI47_06740	0.20	-2.0
1,405,044	+		IAI47_06740	0.24	+0.5
1,405,051	+		IAI47_06740	0.25	-0.5
1,405,052	-		IAI47_06740	0.25	-0.8
1,405,052	-		IAI47_06740	0.25	-0.8
1,405,127	+		IAI47_06740	0.30	-0.4
1,405,127	+		IAI47_06740	0.30	+1.4
1,405,127	+		IAI47_06740	0.30	+0.2
1,405,128	-		IAI47_06740	0.30	+1.6
1,405,168	+		IAI47_06740	0.33	-0.3
1,405,168	+		IAI47_06740	0.33	-0.5
1,405,168	+		IAI47_06740	0.33	+0.3
1,405,169	-		IAI47_06740	0.33	-0.1
1,405,188	+		IAI47_06740	0.34	-1.1
1,405,188	+		IAI47_06740	0.34	+0.0
1,405,189	-		IAI47_06740	0.34	+0.2
1,405,282	+		IAI47_06740	0.40	+0.8
1,405,283	-		IAI47_06740	0.40	-0.4
1,405,284	+		IAI47_06740	0.40	+1.2
1,405,356	+		IAI47_06740	0.45	+0.5
1,405,356	+		IAI47_06740	0.45	+0.5
1,405,356	+		IAI47_06740	0.45	-1.8
1,405,357	-		IAI47_06740	0.45	-0.0
1,405,390	-		IAI47_06740	0.47	-0.9
1,405,390	-		IAI47_06740	0.47	-0.2
1,405,397	+		IAI47_06740	0.48	+0.4
1,405,401	+		IAI47_06740	0.48	-0.6
1,405,401	+		IAI47_06740	0.48	-1.2
1,405,401	+		IAI47_06740	0.48	+0.9
1,405,402	-		IAI47_06740	0.48	+0.2
1,405,402	-		IAI47_06740	0.48	+0.4
1,405,443	+		IAI47_06740	0.51	+1.1
1,405,443	+		IAI47_06740	0.51	-1.1
1,405,443	+		IAI47_06740	0.51	+1.0
1,405,444	-		IAI47_06740	0.51	-1.8
1,405,444	-		IAI47_06740	0.51	+0.4
1,405,444	-		IAI47_06740	0.51	-0.1
1,405,578	+		IAI47_06740	0.60	+1.0
1,405,579	-		IAI47_06740	0.60	+1.0
1,405,579	-		IAI47_06740	0.60	+0.5