Strain Fitness in Pantoea sp. MT58 around IAI47_06245

Experiment: Ying_AminoAcid20 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_06240 and IAI47_06245 are separated by 2 nucleotidesIAI47_06245 and IAI47_06250 are separated by 29 nucleotidesIAI47_06250 and IAI47_06255 are separated by 144 nucleotides IAI47_06240: IAI47_06240 - aspartate-semialdehyde dehydrogenase, at 1,269,293 to 1,270,300 _06240 IAI47_06245: IAI47_06245 - tRNA pseudouridine(38-40) synthase TruA, at 1,270,303 to 1,271,106 _06245 IAI47_06250: IAI47_06250 - DedA family protein, at 1,271,136 to 1,271,798 _06250 IAI47_06255: IAI47_06255 - acetyl-CoA carboxylase, carboxyltransferase subunit beta, at 1,271,943 to 1,272,857 _06255 Position (kb) 1270 1271 1272Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1269.339 kb on + strandat 1269.351 kb on + strandat 1269.351 kb on + strandat 1269.352 kb on - strandat 1269.393 kb on + strandat 1269.394 kb on - strand, within IAI47_06240at 1269.394 kb on - strand, within IAI47_06240at 1269.395 kb on + strand, within IAI47_06240at 1269.396 kb on - strand, within IAI47_06240at 1269.685 kb on + strand, within IAI47_06240at 1269.715 kb on + strand, within IAI47_06240at 1269.715 kb on + strand, within IAI47_06240at 1269.838 kb on + strand, within IAI47_06240at 1269.838 kb on + strand, within IAI47_06240at 1269.839 kb on - strand, within IAI47_06240at 1269.839 kb on - strand, within IAI47_06240at 1269.948 kb on + strand, within IAI47_06240at 1269.948 kb on + strand, within IAI47_06240at 1269.948 kb on + strand, within IAI47_06240at 1269.948 kb on + strand, within IAI47_06240at 1269.952 kb on + strand, within IAI47_06240at 1269.952 kb on + strand, within IAI47_06240at 1269.952 kb on + strand, within IAI47_06240at 1269.952 kb on + strand, within IAI47_06240at 1269.952 kb on + strand, within IAI47_06240at 1269.952 kb on + strand, within IAI47_06240at 1269.952 kb on + strand, within IAI47_06240at 1269.953 kb on - strand, within IAI47_06240at 1269.953 kb on - strand, within IAI47_06240at 1269.953 kb on - strand, within IAI47_06240at 1269.957 kb on + strand, within IAI47_06240at 1269.958 kb on - strand, within IAI47_06240at 1269.960 kb on + strand, within IAI47_06240at 1269.960 kb on + strand, within IAI47_06240at 1269.960 kb on + strand, within IAI47_06240at 1269.976 kb on - strand, within IAI47_06240at 1269.996 kb on + strand, within IAI47_06240at 1270.013 kb on + strand, within IAI47_06240at 1270.013 kb on + strand, within IAI47_06240at 1270.013 kb on + strand, within IAI47_06240at 1270.014 kb on - strand, within IAI47_06240at 1270.099 kb on + strand, within IAI47_06240at 1270.183 kb on + strand, within IAI47_06240at 1270.183 kb on + strand, within IAI47_06240at 1270.184 kb on - strand, within IAI47_06240at 1270.190 kb on + strand, within IAI47_06240at 1270.190 kb on + strand, within IAI47_06240at 1270.191 kb on - strand, within IAI47_06240at 1270.196 kb on - strand, within IAI47_06240at 1270.206 kb on + strandat 1270.206 kb on + strandat 1270.234 kb on + strandat 1270.292 kb on + strandat 1270.292 kb on + strandat 1270.292 kb on + strandat 1270.345 kb on + strandat 1270.364 kb on - strandat 1270.409 kb on + strand, within IAI47_06245at 1270.651 kb on + strand, within IAI47_06245at 1270.652 kb on - strand, within IAI47_06245at 1270.660 kb on + strand, within IAI47_06245at 1270.661 kb on - strand, within IAI47_06245at 1270.712 kb on - strand, within IAI47_06245at 1270.712 kb on - strand, within IAI47_06245at 1270.712 kb on - strand, within IAI47_06245at 1270.858 kb on + strand, within IAI47_06245at 1270.858 kb on + strand, within IAI47_06245at 1270.859 kb on - strand, within IAI47_06245at 1270.934 kb on + strand, within IAI47_06245at 1270.934 kb on + strand, within IAI47_06245at 1270.935 kb on - strand, within IAI47_06245at 1270.947 kb on + strand, within IAI47_06245at 1271.030 kb on - strandat 1271.047 kb on + strandat 1271.104 kb on + strandat 1271.104 kb on + strandat 1271.104 kb on + strandat 1271.109 kb on + strandat 1271.122 kb on + strandat 1271.123 kb on - strandat 1271.123 kb on - strandat 1271.123 kb on - strandat 1271.165 kb on + strandat 1271.166 kb on - strandat 1271.208 kb on + strand, within IAI47_06250at 1271.208 kb on + strand, within IAI47_06250at 1271.208 kb on + strand, within IAI47_06250at 1271.209 kb on - strand, within IAI47_06250at 1271.214 kb on - strand, within IAI47_06250at 1271.214 kb on - strand, within IAI47_06250at 1271.223 kb on + strand, within IAI47_06250at 1271.223 kb on + strand, within IAI47_06250at 1271.223 kb on + strand, within IAI47_06250at 1271.224 kb on - strand, within IAI47_06250at 1271.228 kb on + strand, within IAI47_06250at 1271.229 kb on - strand, within IAI47_06250at 1271.333 kb on + strand, within IAI47_06250at 1271.333 kb on + strand, within IAI47_06250at 1271.334 kb on - strand, within IAI47_06250at 1271.354 kb on + strand, within IAI47_06250at 1271.354 kb on + strand, within IAI47_06250at 1271.354 kb on + strand, within IAI47_06250at 1271.354 kb on + strand, within IAI47_06250at 1271.354 kb on + strand, within IAI47_06250at 1271.354 kb on + strand, within IAI47_06250at 1271.354 kb on + strand, within IAI47_06250at 1271.354 kb on + strand, within IAI47_06250at 1271.355 kb on - strand, within IAI47_06250at 1271.355 kb on - strand, within IAI47_06250at 1271.355 kb on - strand, within IAI47_06250at 1271.355 kb on - strand, within IAI47_06250at 1271.355 kb on - strand, within IAI47_06250at 1271.355 kb on - strand, within IAI47_06250at 1271.355 kb on - strand, within IAI47_06250at 1271.355 kb on - strand, within IAI47_06250at 1271.368 kb on + strand, within IAI47_06250at 1271.403 kb on + strand, within IAI47_06250at 1271.403 kb on + strand, within IAI47_06250at 1271.403 kb on + strand, within IAI47_06250at 1271.403 kb on + strand, within IAI47_06250at 1271.403 kb on + strand, within IAI47_06250at 1271.496 kb on + strand, within IAI47_06250at 1271.522 kb on + strand, within IAI47_06250at 1271.523 kb on - strand, within IAI47_06250at 1271.585 kb on + strand, within IAI47_06250at 1271.585 kb on + strand, within IAI47_06250at 1271.585 kb on + strand, within IAI47_06250at 1271.585 kb on + strand, within IAI47_06250at 1271.585 kb on + strand, within IAI47_06250at 1271.585 kb on + strand, within IAI47_06250at 1271.585 kb on + strand, within IAI47_06250at 1271.585 kb on + strand, within IAI47_06250at 1271.586 kb on - strand, within IAI47_06250at 1271.586 kb on - strand, within IAI47_06250at 1271.586 kb on - strand, within IAI47_06250at 1271.586 kb on - strand, within IAI47_06250at 1271.586 kb on - strand, within IAI47_06250at 1271.586 kb on - strand, within IAI47_06250at 1271.586 kb on - strand, within IAI47_06250at 1271.586 kb on - strand, within IAI47_06250at 1271.586 kb on - strand, within IAI47_06250at 1271.586 kb on - strand, within IAI47_06250at 1271.586 kb on - strand, within IAI47_06250at 1271.586 kb on - strand, within IAI47_06250at 1271.586 kb on - strand, within IAI47_06250at 1271.632 kb on + strand, within IAI47_06250at 1271.633 kb on - strand, within IAI47_06250at 1271.652 kb on + strand, within IAI47_06250at 1271.661 kb on + strand, within IAI47_06250at 1271.720 kb on + strand, within IAI47_06250at 1271.777 kb on + strandat 1271.777 kb on + strandat 1271.797 kb on - strandat 1271.814 kb on + strandat 1271.855 kb on + strandat 1271.855 kb on + strandat 1271.869 kb on + strandat 1271.869 kb on + strandat 1271.869 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3
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1,269,339 + -1.6
1,269,351 + -0.8
1,269,351 + -1.1
1,269,352 - -0.3
1,269,393 + +0.4
1,269,394 - IAI47_06240 0.10 -1.4
1,269,394 - IAI47_06240 0.10 -0.4
1,269,395 + IAI47_06240 0.10 -0.3
1,269,396 - IAI47_06240 0.10 +0.2
1,269,685 + IAI47_06240 0.39 -0.3
1,269,715 + IAI47_06240 0.42 -0.4
1,269,715 + IAI47_06240 0.42 -0.3
1,269,838 + IAI47_06240 0.54 -0.3
1,269,838 + IAI47_06240 0.54 -0.4
1,269,839 - IAI47_06240 0.54 +1.7
1,269,839 - IAI47_06240 0.54 +1.2
1,269,948 + IAI47_06240 0.65 -0.3
1,269,948 + IAI47_06240 0.65 +1.7
1,269,948 + IAI47_06240 0.65 +3.2
1,269,948 + IAI47_06240 0.65 -2.2
1,269,952 + IAI47_06240 0.65 -0.5
1,269,952 + IAI47_06240 0.65 +0.9
1,269,952 + IAI47_06240 0.65 -1.2
1,269,952 + IAI47_06240 0.65 -0.2
1,269,952 + IAI47_06240 0.65 -0.3
1,269,952 + IAI47_06240 0.65 -0.5
1,269,952 + IAI47_06240 0.65 -1.1
1,269,953 - IAI47_06240 0.65 +0.6
1,269,953 - IAI47_06240 0.65 -0.6
1,269,953 - IAI47_06240 0.65 -1.4
1,269,957 + IAI47_06240 0.66 -0.1
1,269,958 - IAI47_06240 0.66 -0.8
1,269,960 + IAI47_06240 0.66 +0.4
1,269,960 + IAI47_06240 0.66 -2.4
1,269,960 + IAI47_06240 0.66 -0.6
1,269,976 - IAI47_06240 0.68 +0.7
1,269,996 + IAI47_06240 0.70 +2.0
1,270,013 + IAI47_06240 0.71 +0.2
1,270,013 + IAI47_06240 0.71 +0.9
1,270,013 + IAI47_06240 0.71 -1.1
1,270,014 - IAI47_06240 0.72 +1.2
1,270,099 + IAI47_06240 0.80 -1.3
1,270,183 + IAI47_06240 0.88 -0.7
1,270,183 + IAI47_06240 0.88 +0.0
1,270,184 - IAI47_06240 0.88 +0.2
1,270,190 + IAI47_06240 0.89 +0.7
1,270,190 + IAI47_06240 0.89 -0.1
1,270,191 - IAI47_06240 0.89 -2.2
1,270,196 - IAI47_06240 0.90 -0.7
1,270,206 + +0.0
1,270,206 + -0.2
1,270,234 + -1.0
1,270,292 + +1.7
1,270,292 + +1.0
1,270,292 + -0.4
1,270,345 + -1.2
1,270,364 - +0.2
1,270,409 + IAI47_06245 0.13 -2.2
1,270,651 + IAI47_06245 0.43 -0.8
1,270,652 - IAI47_06245 0.43 -0.3
1,270,660 + IAI47_06245 0.44 -0.8
1,270,661 - IAI47_06245 0.45 -0.8
1,270,712 - IAI47_06245 0.51 -2.2
1,270,712 - IAI47_06245 0.51 +1.2
1,270,712 - IAI47_06245 0.51 +0.2
1,270,858 + IAI47_06245 0.69 -0.8
1,270,858 + IAI47_06245 0.69 -0.8
1,270,859 - IAI47_06245 0.69 +1.2
1,270,934 + IAI47_06245 0.78 +0.2
1,270,934 + IAI47_06245 0.78 -2.3
1,270,935 - IAI47_06245 0.79 +0.2
1,270,947 + IAI47_06245 0.80 -1.4
1,271,030 - -2.4
1,271,047 + +0.2
1,271,104 + -1.3
1,271,104 + +0.1
1,271,104 + -0.1
1,271,109 + -1.6
1,271,122 + -0.1
1,271,123 - +1.2
1,271,123 - -0.6
1,271,123 - +2.0
1,271,165 + -1.1
1,271,166 - -0.5
1,271,208 + IAI47_06250 0.11 -0.6
1,271,208 + IAI47_06250 0.11 +0.0
1,271,208 + IAI47_06250 0.11 -0.6
1,271,209 - IAI47_06250 0.11 -0.0
1,271,214 - IAI47_06250 0.12 -0.3
1,271,214 - IAI47_06250 0.12 +1.4
1,271,223 + IAI47_06250 0.13 +1.5
1,271,223 + IAI47_06250 0.13 -0.6
1,271,223 + IAI47_06250 0.13 -0.1
1,271,224 - IAI47_06250 0.13 -0.5
1,271,228 + IAI47_06250 0.14 +0.5
1,271,229 - IAI47_06250 0.14 +0.9
1,271,333 + IAI47_06250 0.30 +1.8
1,271,333 + IAI47_06250 0.30 -0.1
1,271,334 - IAI47_06250 0.30 +0.2
1,271,354 + IAI47_06250 0.33 +0.2
1,271,354 + IAI47_06250 0.33 +1.0
1,271,354 + IAI47_06250 0.33 -0.5
1,271,354 + IAI47_06250 0.33 +0.2
1,271,354 + IAI47_06250 0.33 -1.7
1,271,354 + IAI47_06250 0.33 -0.6
1,271,354 + IAI47_06250 0.33 -0.2
1,271,354 + IAI47_06250 0.33 -2.3
1,271,355 - IAI47_06250 0.33 -1.4
1,271,355 - IAI47_06250 0.33 +0.2
1,271,355 - IAI47_06250 0.33 -0.4
1,271,355 - IAI47_06250 0.33 +0.2
1,271,355 - IAI47_06250 0.33 -0.3
1,271,355 - IAI47_06250 0.33 +0.6
1,271,355 - IAI47_06250 0.33 +0.2
1,271,355 - IAI47_06250 0.33 -0.3
1,271,368 + IAI47_06250 0.35 +0.5
1,271,403 + IAI47_06250 0.40 -0.6
1,271,403 + IAI47_06250 0.40 +1.5
1,271,403 + IAI47_06250 0.40 -1.4
1,271,403 + IAI47_06250 0.40 +0.2
1,271,403 + IAI47_06250 0.40 -0.3
1,271,496 + IAI47_06250 0.54 -0.8
1,271,522 + IAI47_06250 0.58 -1.2
1,271,523 - IAI47_06250 0.58 -0.1
1,271,585 + IAI47_06250 0.68 +1.0
1,271,585 + IAI47_06250 0.68 -2.0
1,271,585 + IAI47_06250 0.68 -1.4
1,271,585 + IAI47_06250 0.68 +0.6
1,271,585 + IAI47_06250 0.68 -0.7
1,271,585 + IAI47_06250 0.68 +1.4
1,271,585 + IAI47_06250 0.68 -0.4
1,271,585 + IAI47_06250 0.68 -0.4
1,271,586 - IAI47_06250 0.68 -0.1
1,271,586 - IAI47_06250 0.68 +0.7
1,271,586 - IAI47_06250 0.68 -0.1
1,271,586 - IAI47_06250 0.68 -0.1
1,271,586 - IAI47_06250 0.68 -0.1
1,271,586 - IAI47_06250 0.68 +0.6
1,271,586 - IAI47_06250 0.68 -1.4
1,271,586 - IAI47_06250 0.68 -0.6
1,271,586 - IAI47_06250 0.68 +0.4
1,271,586 - IAI47_06250 0.68 -1.8
1,271,586 - IAI47_06250 0.68 +0.3
1,271,586 - IAI47_06250 0.68 +0.2
1,271,586 - IAI47_06250 0.68 +1.0
1,271,632 + IAI47_06250 0.75 +0.5
1,271,633 - IAI47_06250 0.75 -0.4
1,271,652 + IAI47_06250 0.78 -1.0
1,271,661 + IAI47_06250 0.79 +0.6
1,271,720 + IAI47_06250 0.88 -0.3
1,271,777 + -0.4
1,271,777 + +1.2
1,271,797 - -0.6
1,271,814 + +0.8
1,271,855 + +1.4
1,271,855 + -0.6
1,271,869 + +1.7
1,271,869 + +0.7
1,271,869 + +1.5

Or see this region's nucleotide sequence