Strain Fitness in Pantoea sp. MT58 around IAI47_05325

Experiment: Ying_AminoAcid20 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_05320 and IAI47_05325 are separated by 257 nucleotidesIAI47_05325 and IAI47_05330 are separated by 280 nucleotides IAI47_05320: IAI47_05320 - nitrate/nitrite two-component system sensor histidine kinase NarQ, at 1,125,599 to 1,127,287 _05320 IAI47_05325: IAI47_05325 - DUF1471 domain-containing protein, at 1,127,545 to 1,127,817 _05325 IAI47_05330: IAI47_05330 - L-asparagine permease, at 1,128,098 to 1,129,594 _05330 Position (kb) 1127 1128Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1126.568 kb on + strand, within IAI47_05320at 1126.568 kb on + strand, within IAI47_05320at 1126.568 kb on + strand, within IAI47_05320at 1126.568 kb on + strand, within IAI47_05320at 1126.568 kb on + strand, within IAI47_05320at 1126.569 kb on - strand, within IAI47_05320at 1126.569 kb on - strand, within IAI47_05320at 1126.569 kb on - strand, within IAI47_05320at 1126.569 kb on - strand, within IAI47_05320at 1126.594 kb on + strand, within IAI47_05320at 1126.595 kb on - strand, within IAI47_05320at 1126.611 kb on + strand, within IAI47_05320at 1126.611 kb on + strand, within IAI47_05320at 1126.611 kb on + strand, within IAI47_05320at 1126.612 kb on - strand, within IAI47_05320at 1126.612 kb on - strand, within IAI47_05320at 1126.636 kb on + strand, within IAI47_05320at 1126.722 kb on + strand, within IAI47_05320at 1126.723 kb on - strand, within IAI47_05320at 1126.774 kb on + strand, within IAI47_05320at 1126.813 kb on + strand, within IAI47_05320at 1126.814 kb on - strand, within IAI47_05320at 1126.862 kb on - strand, within IAI47_05320at 1126.862 kb on - strand, within IAI47_05320at 1126.863 kb on + strand, within IAI47_05320at 1126.863 kb on + strand, within IAI47_05320at 1126.863 kb on + strand, within IAI47_05320at 1126.863 kb on + strand, within IAI47_05320at 1126.863 kb on + strand, within IAI47_05320at 1126.864 kb on - strand, within IAI47_05320at 1126.906 kb on - strand, within IAI47_05320at 1126.906 kb on - strand, within IAI47_05320at 1126.936 kb on + strand, within IAI47_05320at 1127.016 kb on - strand, within IAI47_05320at 1127.127 kb on + strandat 1127.127 kb on + strandat 1127.128 kb on - strandat 1127.128 kb on - strandat 1127.159 kb on - strandat 1127.189 kb on + strandat 1127.189 kb on + strandat 1127.198 kb on + strandat 1127.199 kb on - strandat 1127.266 kb on + strandat 1127.266 kb on + strandat 1127.317 kb on + strandat 1127.317 kb on + strandat 1127.317 kb on + strandat 1127.317 kb on + strandat 1127.318 kb on - strandat 1127.318 kb on - strandat 1127.318 kb on - strandat 1127.318 kb on - strandat 1127.318 kb on - strandat 1127.319 kb on + strandat 1127.320 kb on - strandat 1127.375 kb on + strandat 1127.376 kb on - strandat 1127.376 kb on - strandat 1127.376 kb on - strandat 1127.376 kb on - strandat 1127.389 kb on - strandat 1127.389 kb on - strandat 1127.389 kb on - strandat 1127.424 kb on - strandat 1127.432 kb on - strandat 1127.454 kb on + strandat 1127.455 kb on - strandat 1127.455 kb on - strandat 1127.491 kb on + strandat 1127.507 kb on + strandat 1127.508 kb on - strandat 1127.564 kb on + strandat 1127.564 kb on + strandat 1127.580 kb on - strand, within IAI47_05325at 1127.580 kb on - strand, within IAI47_05325at 1127.644 kb on - strand, within IAI47_05325at 1127.679 kb on - strand, within IAI47_05325at 1127.747 kb on - strand, within IAI47_05325at 1127.809 kb on + strandat 1127.809 kb on + strandat 1127.809 kb on + strandat 1127.810 kb on - strandat 1127.810 kb on - strandat 1127.810 kb on - strandat 1127.844 kb on - strandat 1127.904 kb on - strandat 1127.904 kb on - strandat 1127.932 kb on + strandat 1127.932 kb on + strandat 1128.046 kb on + strandat 1128.046 kb on + strandat 1128.047 kb on - strandat 1128.047 kb on - strandat 1128.075 kb on + strandat 1128.076 kb on - strandat 1128.097 kb on + strandat 1128.097 kb on + strandat 1128.097 kb on + strandat 1128.097 kb on + strandat 1128.098 kb on - strandat 1128.098 kb on - strandat 1128.098 kb on - strandat 1128.296 kb on + strand, within IAI47_05330at 1128.296 kb on + strand, within IAI47_05330at 1128.296 kb on - strand, within IAI47_05330at 1128.297 kb on - strand, within IAI47_05330at 1128.297 kb on - strand, within IAI47_05330at 1128.354 kb on + strand, within IAI47_05330at 1128.354 kb on + strand, within IAI47_05330at 1128.354 kb on + strand, within IAI47_05330at 1128.355 kb on - strand, within IAI47_05330at 1128.386 kb on + strand, within IAI47_05330at 1128.386 kb on + strand, within IAI47_05330at 1128.386 kb on + strand, within IAI47_05330at 1128.386 kb on + strand, within IAI47_05330at 1128.386 kb on + strand, within IAI47_05330at 1128.387 kb on - strand, within IAI47_05330at 1128.387 kb on - strand, within IAI47_05330at 1128.387 kb on - strand, within IAI47_05330at 1128.387 kb on - strand, within IAI47_05330at 1128.387 kb on - strand, within IAI47_05330at 1128.387 kb on - strand, within IAI47_05330at 1128.419 kb on + strand, within IAI47_05330at 1128.419 kb on + strand, within IAI47_05330at 1128.419 kb on + strand, within IAI47_05330at 1128.419 kb on + strand, within IAI47_05330at 1128.420 kb on - strand, within IAI47_05330at 1128.420 kb on - strand, within IAI47_05330at 1128.420 kb on - strand, within IAI47_05330at 1128.420 kb on - strand, within IAI47_05330at 1128.437 kb on + strand, within IAI47_05330at 1128.438 kb on - strand, within IAI47_05330at 1128.438 kb on - strand, within IAI47_05330at 1128.438 kb on - strand, within IAI47_05330at 1128.463 kb on + strand, within IAI47_05330at 1128.491 kb on + strand, within IAI47_05330at 1128.491 kb on + strand, within IAI47_05330at 1128.492 kb on - strand, within IAI47_05330at 1128.492 kb on - strand, within IAI47_05330at 1128.492 kb on - strand, within IAI47_05330at 1128.492 kb on - strand, within IAI47_05330at 1128.492 kb on - strand, within IAI47_05330at 1128.492 kb on - strand, within IAI47_05330at 1128.492 kb on - strand, within IAI47_05330at 1128.500 kb on + strand, within IAI47_05330at 1128.501 kb on - strand, within IAI47_05330at 1128.501 kb on - strand, within IAI47_05330at 1128.501 kb on - strand, within IAI47_05330at 1128.586 kb on + strand, within IAI47_05330at 1128.587 kb on - strand, within IAI47_05330at 1128.721 kb on + strand, within IAI47_05330at 1128.721 kb on + strand, within IAI47_05330at 1128.722 kb on - strand, within IAI47_05330

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3
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1,126,568 + IAI47_05320 0.57 +1.1
1,126,568 + IAI47_05320 0.57 +0.6
1,126,568 + IAI47_05320 0.57 -0.0
1,126,568 + IAI47_05320 0.57 +1.4
1,126,568 + IAI47_05320 0.57 -0.8
1,126,569 - IAI47_05320 0.57 +1.2
1,126,569 - IAI47_05320 0.57 +0.6
1,126,569 - IAI47_05320 0.57 +0.9
1,126,569 - IAI47_05320 0.57 -0.6
1,126,594 + IAI47_05320 0.59 +0.7
1,126,595 - IAI47_05320 0.59 -0.4
1,126,611 + IAI47_05320 0.60 -0.1
1,126,611 + IAI47_05320 0.60 -0.1
1,126,611 + IAI47_05320 0.60 -0.0
1,126,612 - IAI47_05320 0.60 -0.4
1,126,612 - IAI47_05320 0.60 +0.4
1,126,636 + IAI47_05320 0.61 -1.2
1,126,722 + IAI47_05320 0.66 -0.1
1,126,723 - IAI47_05320 0.67 -0.7
1,126,774 + IAI47_05320 0.70 -1.1
1,126,813 + IAI47_05320 0.72 +1.8
1,126,814 - IAI47_05320 0.72 +1.3
1,126,862 - IAI47_05320 0.75 +0.4
1,126,862 - IAI47_05320 0.75 -1.4
1,126,863 + IAI47_05320 0.75 +0.9
1,126,863 + IAI47_05320 0.75 +1.3
1,126,863 + IAI47_05320 0.75 -0.8
1,126,863 + IAI47_05320 0.75 -0.8
1,126,863 + IAI47_05320 0.75 -0.8
1,126,864 - IAI47_05320 0.75 -0.1
1,126,906 - IAI47_05320 0.77 +0.8
1,126,906 - IAI47_05320 0.77 -2.1
1,126,936 + IAI47_05320 0.79 +0.0
1,127,016 - IAI47_05320 0.84 -0.5
1,127,127 + +0.2
1,127,127 + -0.3
1,127,128 - -0.5
1,127,128 - +0.4
1,127,159 - +1.7
1,127,189 + -1.1
1,127,189 + +0.9
1,127,198 + -0.7
1,127,199 - +0.4
1,127,266 + +0.2
1,127,266 + +0.6
1,127,317 + -0.5
1,127,317 + -2.8
1,127,317 + -1.6
1,127,317 + -0.3
1,127,318 - +0.5
1,127,318 - +0.2
1,127,318 - -0.0
1,127,318 - +1.1
1,127,318 - -0.5
1,127,319 + -0.1
1,127,320 - +0.5
1,127,375 + -0.2
1,127,376 - +0.8
1,127,376 - +0.0
1,127,376 - +0.3
1,127,376 - -0.1
1,127,389 - -0.6
1,127,389 - -0.3
1,127,389 - -0.4
1,127,424 - -0.2
1,127,432 - +0.2
1,127,454 + -0.2
1,127,455 - +0.2
1,127,455 - +1.8
1,127,491 + +0.2
1,127,507 + +1.5
1,127,508 - -0.2
1,127,564 + -1.8
1,127,564 + +1.2
1,127,580 - IAI47_05325 0.13 -0.1
1,127,580 - IAI47_05325 0.13 +0.2
1,127,644 - IAI47_05325 0.36 +0.4
1,127,679 - IAI47_05325 0.49 +0.2
1,127,747 - IAI47_05325 0.74 +0.2
1,127,809 + -0.5
1,127,809 + +0.4
1,127,809 + +1.0
1,127,810 - +0.8
1,127,810 - -0.3
1,127,810 - -0.7
1,127,844 - -0.0
1,127,904 - -0.5
1,127,904 - -0.8
1,127,932 + -1.2
1,127,932 + -0.5
1,128,046 + +0.2
1,128,046 + -0.8
1,128,047 - -1.4
1,128,047 - -1.8
1,128,075 + -1.1
1,128,076 - +0.6
1,128,097 + +0.2
1,128,097 + -0.4
1,128,097 + +0.5
1,128,097 + +0.2
1,128,098 - -1.4
1,128,098 - -2.4
1,128,098 - -0.4
1,128,296 + IAI47_05330 0.13 -1.8
1,128,296 + IAI47_05330 0.13 -2.1
1,128,296 - IAI47_05330 0.13 -4.6
1,128,297 - IAI47_05330 0.13 -2.4
1,128,297 - IAI47_05330 0.13 -1.4
1,128,354 + IAI47_05330 0.17 -0.8
1,128,354 + IAI47_05330 0.17 -1.4
1,128,354 + IAI47_05330 0.17 -3.4
1,128,355 - IAI47_05330 0.17 -1.0
1,128,386 + IAI47_05330 0.19 -0.4
1,128,386 + IAI47_05330 0.19 -2.4
1,128,386 + IAI47_05330 0.19 -1.2
1,128,386 + IAI47_05330 0.19 -2.0
1,128,386 + IAI47_05330 0.19 -2.0
1,128,387 - IAI47_05330 0.19 -2.7
1,128,387 - IAI47_05330 0.19 -0.4
1,128,387 - IAI47_05330 0.19 -2.4
1,128,387 - IAI47_05330 0.19 -1.3
1,128,387 - IAI47_05330 0.19 -3.6
1,128,387 - IAI47_05330 0.19 -0.8
1,128,419 + IAI47_05330 0.21 -1.8
1,128,419 + IAI47_05330 0.21 -1.4
1,128,419 + IAI47_05330 0.21 -1.0
1,128,419 + IAI47_05330 0.21 -1.4
1,128,420 - IAI47_05330 0.22 +0.8
1,128,420 - IAI47_05330 0.22 -2.8
1,128,420 - IAI47_05330 0.22 -0.8
1,128,420 - IAI47_05330 0.22 -1.2
1,128,437 + IAI47_05330 0.23 -0.1
1,128,438 - IAI47_05330 0.23 -1.1
1,128,438 - IAI47_05330 0.23 -3.1
1,128,438 - IAI47_05330 0.23 -2.4
1,128,463 + IAI47_05330 0.24 -0.1
1,128,491 + IAI47_05330 0.26 -2.4
1,128,491 + IAI47_05330 0.26 -2.1
1,128,492 - IAI47_05330 0.26 -2.4
1,128,492 - IAI47_05330 0.26 -1.9
1,128,492 - IAI47_05330 0.26 -1.0
1,128,492 - IAI47_05330 0.26 +0.2
1,128,492 - IAI47_05330 0.26 -0.8
1,128,492 - IAI47_05330 0.26 -0.4
1,128,492 - IAI47_05330 0.26 -1.1
1,128,500 + IAI47_05330 0.27 -2.6
1,128,501 - IAI47_05330 0.27 -1.4
1,128,501 - IAI47_05330 0.27 -0.4
1,128,501 - IAI47_05330 0.27 +0.8
1,128,586 + IAI47_05330 0.33 -1.4
1,128,587 - IAI47_05330 0.33 +0.8
1,128,721 + IAI47_05330 0.42 -1.8
1,128,721 + IAI47_05330 0.42 -0.4
1,128,722 - IAI47_05330 0.42 -0.5

Or see this region's nucleotide sequence