Strain Fitness in Pantoea sp. MT58 around IAI47_05275

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
1,113,788	+		IAI47_05270	0.17	+0.7
1,113,802	+		IAI47_05270	0.19	+0.7
1,113,802	+		IAI47_05270	0.19	+0.6
1,113,802	+		IAI47_05270	0.19	-1.0
1,113,802	+		IAI47_05270	0.19	+0.2
1,113,802	+		IAI47_05270	0.19	+0.4
1,113,803	-		IAI47_05270	0.19	-0.5
1,113,803	-		IAI47_05270	0.19	-1.3
1,113,803	-		IAI47_05270	0.19	+1.8
1,113,803	-		IAI47_05270	0.19	+0.8
1,113,810	-		IAI47_05270	0.19	+0.6
1,113,936	+		IAI47_05270	0.32	-0.2
1,113,936	+		IAI47_05270	0.32	+1.2
1,113,936	+		IAI47_05270	0.32	+1.2
1,113,936	+		IAI47_05270	0.32	-0.1
1,113,936	+		IAI47_05270	0.32	-0.8
1,113,937	-		IAI47_05270	0.32	-1.4
1,113,937	-		IAI47_05270	0.32	+0.5
1,113,937	-		IAI47_05270	0.32	+0.5
1,113,939	+		IAI47_05270	0.32	+0.2
1,114,008	+		IAI47_05270	0.39	+1.5
1,114,008	+		IAI47_05270	0.39	-1.2
1,114,009	-		IAI47_05270	0.39	+0.7
1,114,075	+		IAI47_05270	0.45	-0.6
1,114,075	+		IAI47_05270	0.45	+0.0
1,114,075	+		IAI47_05270	0.45	-1.1
1,114,114	+		IAI47_05270	0.49	+2.0
1,114,114	+		IAI47_05270	0.49	-1.1
1,114,115	-		IAI47_05270	0.49	+0.7
1,114,133	+		IAI47_05270	0.51	+0.2
1,114,133	+		IAI47_05270	0.51	+0.2
1,114,133	+		IAI47_05270	0.51	-1.4
1,114,133	+		IAI47_05270	0.51	-0.2
1,114,133	+		IAI47_05270	0.51	-0.5
1,114,134	-		IAI47_05270	0.51	+0.2
1,114,134	-		IAI47_05270	0.51	-1.5
1,114,161	+		IAI47_05270	0.53	-0.1
1,114,162	+		IAI47_05270	0.53	-0.1
1,114,162	-		IAI47_05270	0.53	-0.7
1,114,170	+		IAI47_05270	0.54	+1.1
1,114,170	+		IAI47_05270	0.54	-0.4
1,114,170	+		IAI47_05270	0.54	-0.4
1,114,195	+		IAI47_05270	0.57	-0.1
1,114,196	-		IAI47_05270	0.57	-0.3
1,114,196	-		IAI47_05270	0.57	-0.5
1,114,196	-		IAI47_05270	0.57	+0.6
1,114,196	-		IAI47_05270	0.57	+0.6
1,114,287	+		IAI47_05270	0.66	+2.4
1,114,287	+		IAI47_05270	0.66	+0.0
1,114,287	+		IAI47_05270	0.66	+1.8
1,114,287	+		IAI47_05270	0.66	-1.1
1,114,287	+		IAI47_05270	0.66	+1.2
1,114,288	-		IAI47_05270	0.66	+0.4
1,114,348	+		IAI47_05270	0.72	-0.7
1,114,348	+		IAI47_05270	0.72	+0.5
1,114,348	+		IAI47_05270	0.72	-0.8
1,114,348	+		IAI47_05270	0.72	-1.4
1,114,349	-		IAI47_05270	0.72	-0.0
1,114,349	-		IAI47_05270	0.72	+0.2
1,114,349	-		IAI47_05270	0.72	-0.1
1,114,349	-		IAI47_05270	0.72	-0.0
1,114,349	-		IAI47_05270	0.72	-1.6
1,114,349	-		IAI47_05270	0.72	+1.2
1,114,350	+		IAI47_05270	0.72	-1.1
1,114,350	+		IAI47_05270	0.72	+1.4
1,114,350	+		IAI47_05270	0.72	-0.0
1,114,350	+		IAI47_05270	0.72	+0.2
1,114,350	+		IAI47_05270	0.72	+0.2
1,114,350	+		IAI47_05270	0.72	-0.0
1,114,350	+		IAI47_05270	0.72	-1.2
1,114,350	+		IAI47_05270	0.72	-0.9
1,114,350	+		IAI47_05270	0.72	+1.2
1,114,350	+		IAI47_05270	0.72	+0.2
1,114,350	+		IAI47_05270	0.72	-1.4
1,114,350	+		IAI47_05270	0.72	-0.5
1,114,350	+		IAI47_05270	0.72	-0.5
1,114,350	+		IAI47_05270	0.72	+0.0
1,114,350	+		IAI47_05270	0.72	+0.8
1,114,351	-		IAI47_05270	0.72	-0.3
1,114,351	-		IAI47_05270	0.72	+0.2
1,114,351	-		IAI47_05270	0.72	+0.2
1,114,351	-		IAI47_05270	0.72	+0.8
1,114,351	-		IAI47_05270	0.72	-0.1
1,114,351	-		IAI47_05270	0.72	-0.4
1,114,351	-		IAI47_05270	0.72	-0.3
1,114,351	-		IAI47_05270	0.72	-0.6
1,114,351	-		IAI47_05270	0.72	+0.9
1,114,428	+		IAI47_05270	0.79	+0.2
1,114,444	+		IAI47_05270	0.81	-0.2
1,114,444	+		IAI47_05270	0.81	-0.8
1,114,444	+		IAI47_05270	0.81	-0.1
1,114,445	-		IAI47_05270	0.81	+0.2
1,114,445	-		IAI47_05270	0.81	-0.2
1,114,445	-		IAI47_05270	0.81	-0.5
1,114,499	+		IAI47_05270	0.86	+0.2
1,114,499	+		IAI47_05270	0.86	-0.8
1,114,500	-		IAI47_05270	0.86	+0.2
1,114,500	-		IAI47_05270	0.86	-0.0
1,114,513	+		IAI47_05270	0.88	-0.0
1,114,513	+		IAI47_05270	0.88	+1.4
1,114,513	+		IAI47_05270	0.88	+0.5
1,114,513	+		IAI47_05270	0.88	-0.8
1,114,639	+				+0.2
1,114,639	+				+1.4
1,114,640	-				+0.5
1,114,640	-				+0.2
1,114,640	-				-0.4
1,114,640	-				-1.4
1,114,675	+				-0.6
1,114,676	-				-2.6
1,114,691	+				-1.3
1,114,691	+				-1.4
1,114,692	-				-1.4
1,114,692	-				-2.8
1,114,694	+				-1.2
1,114,694	+				+0.5
1,114,695	-				-4.2
1,114,695	-				-2.1
1,114,763	+				-1.4
1,114,783	+				-4.3
1,114,783	+				-1.8
1,114,783	+				-5.1
1,114,783	+				-4.1
1,114,783	+				-2.6
1,114,783	+				-3.3
1,114,784	-				-3.0
1,114,808	+				-3.0
1,114,809	-				-4.5
1,114,830	+				-2.4
1,114,832	+				-2.6
1,114,832	+				-3.8
1,114,833	-				-4.0
1,114,879	+		IAI47_05275	0.13	-2.1
1,114,879	+		IAI47_05275	0.13	-2.4
1,114,879	+		IAI47_05275	0.13	-4.0
1,114,880	-		IAI47_05275	0.13	-2.4
1,114,880	-		IAI47_05275	0.13	-0.8
1,114,945	+		IAI47_05275	0.22	-2.6
1,115,052	+		IAI47_05275	0.37	-3.4
1,115,053	-		IAI47_05275	0.37	-3.8
1,115,091	+		IAI47_05275	0.43	-3.7
1,115,192	+		IAI47_05275	0.57	-4.0
1,115,193	-		IAI47_05275	0.57	-4.1
1,115,254	+		IAI47_05275	0.65	-0.8
1,115,255	-		IAI47_05275	0.66	-2.6
1,115,335	+		IAI47_05275	0.77	-1.8
1,115,336	-		IAI47_05275	0.77	-4.0
1,115,407	+		IAI47_05275	0.87	-3.9
1,115,407	+		IAI47_05275	0.87	-1.4
1,115,408	-		IAI47_05275	0.87	-3.1
1,115,459	+				-4.0
1,115,459	+				-1.4
1,115,459	+				-2.1
1,115,460	-				-1.4
1,115,488	-				-2.6
1,115,488	-				-1.4
1,115,518	+				-0.4
1,115,518	+				+2.1
1,115,518	+				-0.8
1,115,519	-				-0.4
1,115,519	-				-0.2
1,115,519	-				+0.9
1,115,519	-				-1.8
1,115,519	-				+0.8
1,115,523	+				-0.3
1,115,523	-				-0.8
1,115,523	-				+0.9
1,115,523	-				+0.1
1,115,523	-				-1.4
1,115,523	-				-0.8
1,115,531	+				+0.2
1,115,571	-				+0.5
1,115,599	+				+2.1
1,115,599	+				-0.1
1,115,599	+				+0.6
1,115,599	+				+1.2
1,115,600	-				-1.4
1,115,600	-				-0.1
1,115,600	-				+0.7
1,115,675	+				-0.8
1,115,675	+				+1.2
1,115,675	+				+0.2
1,115,675	+				-1.7
1,115,675	+				+0.8
1,115,675	+				-0.9
1,115,675	+				+0.2
1,115,676	-				-0.2
1,115,676	-				-1.4
1,115,676	-				+0.5
1,115,676	-				-0.4
1,115,676	-				-0.6
1,115,676	-				+0.9
1,115,705	+				-1.0
1,115,706	-				+1.6
1,115,706	-				+1.2
1,115,751	+		IAI47_05280	0.13	+0.2
1,115,752	-		IAI47_05280	0.13	-0.1
1,115,775	+		IAI47_05280	0.15	+0.6
1,115,775	+		IAI47_05280	0.15	+1.2
1,115,776	-		IAI47_05280	0.16	-0.8
1,115,785	+		IAI47_05280	0.17	-0.2
1,115,785	+		IAI47_05280	0.17	-0.8
1,115,785	+		IAI47_05280	0.17	+0.1
1,115,786	-		IAI47_05280	0.17	+1.2
1,115,788	+		IAI47_05280	0.17	+0.3
1,115,789	-		IAI47_05280	0.17	-1.4
1,115,789	-		IAI47_05280	0.17	+0.2
1,115,789	-		IAI47_05280	0.17	+0.2
1,115,789	-		IAI47_05280	0.17	+0.8
1,115,789	-		IAI47_05280	0.17	+0.6
1,115,794	+		IAI47_05280	0.18	+1.8
1,115,895	+		IAI47_05280	0.29	+0.7
1,115,895	+		IAI47_05280	0.29	-1.0
1,115,896	-		IAI47_05280	0.29	-1.4
1,115,896	-		IAI47_05280	0.29	-0.7
1,115,922	+		IAI47_05280	0.32	+0.5
1,115,922	+		IAI47_05280	0.32	-0.2
1,115,923	-		IAI47_05280	0.33	+0.9
1,115,923	-		IAI47_05280	0.33	-0.8
1,115,923	-		IAI47_05280	0.33	-0.2
1,115,923	-		IAI47_05280	0.33	-2.0
1,115,959	+		IAI47_05280	0.37	+0.1
1,115,959	+		IAI47_05280	0.37	-1.1
1,115,959	+		IAI47_05280	0.37	-0.1
1,115,959	+		IAI47_05280	0.37	-1.4
1,115,959	+		IAI47_05280	0.37	-0.0
1,115,959	+		IAI47_05280	0.37	+1.2
1,115,960	-		IAI47_05280	0.37	-0.7
1,115,960	-		IAI47_05280	0.37	-1.3
1,115,960	-		IAI47_05280	0.37	-1.0
1,115,983	+		IAI47_05280	0.39	+2.4
1,115,983	+		IAI47_05280	0.39	-0.6
1,115,983	+		IAI47_05280	0.39	+0.0
1,115,984	-		IAI47_05280	0.40	-1.1
1,115,984	-		IAI47_05280	0.40	-0.1
1,116,040	+		IAI47_05280	0.46	+0.8
1,116,040	+		IAI47_05280	0.46	+0.2
1,116,040	+		IAI47_05280	0.46	+0.2
1,116,040	+		IAI47_05280	0.46	+2.5
1,116,040	+		IAI47_05280	0.46	-1.4
1,116,040	+		IAI47_05280	0.46	+1.6
1,116,040	+		IAI47_05280	0.46	+0.6
1,116,041	-		IAI47_05280	0.46	-1.4
1,116,041	-		IAI47_05280	0.46	+0.5
1,116,041	-		IAI47_05280	0.46	+0.2
1,116,041	-		IAI47_05280	0.46	+0.6
1,116,041	-		IAI47_05280	0.46	-1.1
1,116,041	-		IAI47_05280	0.46	-0.1
1,116,041	-		IAI47_05280	0.46	-0.5
1,116,041	-		IAI47_05280	0.46	-0.8
1,116,041	-		IAI47_05280	0.46	+0.9
1,116,041	-		IAI47_05280	0.46	-1.8
1,116,041	-		IAI47_05280	0.46	-1.1
1,116,064	+		IAI47_05280	0.49	-1.0
1,116,064	+		IAI47_05280	0.49	+0.0
1,116,064	+		IAI47_05280	0.49	+0.8
1,116,064	+		IAI47_05280	0.49	+0.6
1,116,065	-		IAI47_05280	0.49	-0.4
1,116,065	-		IAI47_05280	0.49	-2.1
1,116,065	-		IAI47_05280	0.49	-0.1
1,116,082	+		IAI47_05280	0.51	+0.4
1,116,082	+		IAI47_05280	0.51	+0.7
1,116,133	+		IAI47_05280	0.57	-1.1
1,116,133	+		IAI47_05280	0.57	-1.4
1,116,134	-		IAI47_05280	0.57	+0.1
1,116,134	-		IAI47_05280	0.57	-1.4
1,116,180	+		IAI47_05280	0.62	-0.0
1,116,181	-		IAI47_05280	0.62	+1.7
1,116,190	-		IAI47_05280	0.63	-0.2
1,116,190	-		IAI47_05280	0.63	-0.2
1,116,190	-		IAI47_05280	0.63	-0.3
1,116,194	+		IAI47_05280	0.64	+0.6
1,116,194	+		IAI47_05280	0.64	+0.2
1,116,194	+		IAI47_05280	0.64	-0.9
1,116,195	-		IAI47_05280	0.64	+0.4
1,116,292	+		IAI47_05280	0.75	-1.1
1,116,292	+		IAI47_05280	0.75	-0.4
1,116,292	+		IAI47_05280	0.75	+1.0
1,116,292	+		IAI47_05280	0.75	+0.2
1,116,292	+		IAI47_05280	0.75	+0.6
1,116,292	+		IAI47_05280	0.75	+1.0
1,116,292	+		IAI47_05280	0.75	-0.6
1,116,292	+		IAI47_05280	0.75	-1.0
1,116,292	+		IAI47_05280	0.75	-0.5
1,116,292	+		IAI47_05280	0.75	+1.0
1,116,292	+		IAI47_05280	0.75	-0.6
1,116,292	+		IAI47_05280	0.75	+0.2
1,116,292	+		IAI47_05280	0.75	+0.1
1,116,292	+		IAI47_05280	0.75	-0.6
1,116,292	+		IAI47_05280	0.75	+0.8
1,116,292	+		IAI47_05280	0.75	+0.3
1,116,293	-		IAI47_05280	0.75	-1.1
1,116,293	-		IAI47_05280	0.75	+0.5
1,116,293	-		IAI47_05280	0.75	+0.2
1,116,293	-		IAI47_05280	0.75	+0.2
1,116,293	-		IAI47_05280	0.75	+0.8
1,116,293	-		IAI47_05280	0.75	+0.5
1,116,293	-		IAI47_05280	0.75	-0.3
1,116,293	-		IAI47_05280	0.75	+1.5
1,116,293	-		IAI47_05280	0.75	-0.4
1,116,293	-		IAI47_05280	0.75	+0.6
1,116,293	-		IAI47_05280	0.75	+0.9
1,116,293	-		IAI47_05280	0.75	+0.4
1,116,293	-		IAI47_05280	0.75	+2.2
1,116,293	-		IAI47_05280	0.75	-0.3
1,116,293	-		IAI47_05280	0.75	+0.4
1,116,293	-		IAI47_05280	0.75	+0.4
1,116,293	-		IAI47_05280	0.75	+0.6
1,116,294	+		IAI47_05280	0.75	+0.2
1,116,294	+		IAI47_05280	0.75	-0.8
1,116,294	+		IAI47_05280	0.75	-0.1
1,116,294	+		IAI47_05280	0.75	+0.9
1,116,294	+		IAI47_05280	0.75	-1.4
1,116,294	+		IAI47_05280	0.75	+0.4
1,116,294	+		IAI47_05280	0.75	-1.4
1,116,294	+		IAI47_05280	0.75	+0.2
1,116,295	-		IAI47_05280	0.75	-1.8
1,116,295	-		IAI47_05280	0.75	-0.3
1,116,295	-		IAI47_05280	0.75	-0.5
1,116,295	-		IAI47_05280	0.75	-0.2
1,116,295	-		IAI47_05280	0.75	+0.2
1,116,295	-		IAI47_05280	0.75	-0.8
1,116,295	-		IAI47_05280	0.75	+0.6
1,116,295	-		IAI47_05280	0.75	+1.2
1,116,295	-		IAI47_05280	0.75	+0.5
1,116,399	-		IAI47_05280	0.87	-0.3
1,116,415	-		IAI47_05280	0.89	-0.0
1,116,415	-		IAI47_05280	0.89	+0.9
1,116,439	+				+0.2
1,116,439	+				-1.1
1,116,439	+				+0.4
1,116,439	+				+0.8
1,116,439	+				-1.5
1,116,439	+				-0.8
1,116,440	-				+0.8
1,116,440	-				-0.2
1,116,440	-				-0.7
1,116,440	-				+0.9
1,116,440	-				+2.0
1,116,440	-				+1.5
1,116,451	-				-1.2