Strain Fitness in Pantoea sp. MT58 around IAI47_05195

Experiment: Ying_AminoAcid20 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_05190 and IAI47_05195 are separated by 101 nucleotidesIAI47_05195 and IAI47_05200 overlap by 4 nucleotidesIAI47_05200 and IAI47_05205 are separated by 50 nucleotides IAI47_05190: IAI47_05190 - uracil permease, at 1,097,945 to 1,099,228 _05190 IAI47_05195: IAI47_05195 - DnaA inactivator Hda, at 1,099,330 to 1,100,037 _05195 IAI47_05200: IAI47_05200 - arsenate reductase (glutaredoxin), at 1,100,034 to 1,100,375 _05200 IAI47_05205: IAI47_05205 - M48 family metallopeptidase, at 1,100,426 to 1,101,889 _05205 Position (kb) 1099 1100 1101Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1098.370 kb on + strand, within IAI47_05190at 1098.413 kb on - strand, within IAI47_05190at 1098.448 kb on - strand, within IAI47_05190at 1098.538 kb on + strand, within IAI47_05190at 1098.538 kb on + strand, within IAI47_05190at 1098.599 kb on + strand, within IAI47_05190at 1098.599 kb on + strand, within IAI47_05190at 1098.600 kb on - strand, within IAI47_05190at 1098.600 kb on - strand, within IAI47_05190at 1098.684 kb on + strand, within IAI47_05190at 1098.806 kb on + strand, within IAI47_05190at 1098.806 kb on + strand, within IAI47_05190at 1098.807 kb on - strand, within IAI47_05190at 1098.807 kb on - strand, within IAI47_05190at 1098.807 kb on - strand, within IAI47_05190at 1098.807 kb on - strand, within IAI47_05190at 1098.807 kb on - strand, within IAI47_05190at 1098.845 kb on + strand, within IAI47_05190at 1098.846 kb on - strand, within IAI47_05190at 1098.968 kb on + strand, within IAI47_05190at 1098.968 kb on + strand, within IAI47_05190at 1098.968 kb on + strand, within IAI47_05190at 1098.969 kb on - strand, within IAI47_05190at 1098.969 kb on - strand, within IAI47_05190at 1099.022 kb on + strand, within IAI47_05190at 1099.022 kb on + strand, within IAI47_05190at 1099.022 kb on + strand, within IAI47_05190at 1099.023 kb on - strand, within IAI47_05190at 1099.023 kb on - strand, within IAI47_05190at 1099.094 kb on - strand, within IAI47_05190at 1099.168 kb on + strandat 1099.293 kb on + strandat 1099.293 kb on + strandat 1099.293 kb on + strandat 1099.294 kb on - strandat 1099.370 kb on - strandat 1099.370 kb on - strandat 1099.468 kb on + strand, within IAI47_05195at 1099.468 kb on + strand, within IAI47_05195at 1099.469 kb on - strand, within IAI47_05195at 1099.474 kb on + strand, within IAI47_05195at 1099.698 kb on + strand, within IAI47_05195at 1099.764 kb on + strand, within IAI47_05195at 1099.847 kb on + strand, within IAI47_05195at 1100.016 kb on + strandat 1100.036 kb on - strandat 1100.082 kb on - strand, within IAI47_05200at 1100.097 kb on + strand, within IAI47_05200at 1100.127 kb on + strand, within IAI47_05200at 1100.128 kb on - strand, within IAI47_05200at 1100.182 kb on + strand, within IAI47_05200at 1100.183 kb on - strand, within IAI47_05200at 1100.196 kb on - strand, within IAI47_05200at 1100.196 kb on - strand, within IAI47_05200at 1100.196 kb on - strand, within IAI47_05200at 1100.205 kb on + strand, within IAI47_05200at 1100.238 kb on + strand, within IAI47_05200at 1100.281 kb on + strand, within IAI47_05200at 1100.281 kb on + strand, within IAI47_05200at 1100.281 kb on + strand, within IAI47_05200at 1100.281 kb on + strand, within IAI47_05200at 1100.281 kb on + strand, within IAI47_05200at 1100.281 kb on + strand, within IAI47_05200at 1100.281 kb on + strand, within IAI47_05200at 1100.282 kb on - strand, within IAI47_05200at 1100.282 kb on - strand, within IAI47_05200at 1100.427 kb on + strandat 1100.427 kb on + strandat 1100.440 kb on - strandat 1100.446 kb on + strandat 1100.446 kb on + strandat 1100.446 kb on + strandat 1100.447 kb on - strandat 1100.447 kb on - strandat 1100.447 kb on - strandat 1100.459 kb on + strandat 1100.459 kb on + strandat 1100.459 kb on + strandat 1100.459 kb on + strandat 1100.480 kb on - strandat 1100.645 kb on + strand, within IAI47_05205at 1100.671 kb on + strand, within IAI47_05205at 1100.672 kb on - strand, within IAI47_05205at 1100.672 kb on - strand, within IAI47_05205at 1100.686 kb on - strand, within IAI47_05205at 1100.699 kb on - strand, within IAI47_05205at 1100.715 kb on + strand, within IAI47_05205at 1100.715 kb on + strand, within IAI47_05205at 1100.715 kb on + strand, within IAI47_05205at 1100.715 kb on + strand, within IAI47_05205at 1100.715 kb on + strand, within IAI47_05205at 1100.716 kb on - strand, within IAI47_05205at 1100.716 kb on - strand, within IAI47_05205at 1100.716 kb on - strand, within IAI47_05205at 1100.716 kb on - strand, within IAI47_05205at 1100.733 kb on + strand, within IAI47_05205at 1100.733 kb on + strand, within IAI47_05205at 1100.733 kb on + strand, within IAI47_05205at 1100.733 kb on + strand, within IAI47_05205at 1100.733 kb on + strand, within IAI47_05205at 1100.733 kb on + strand, within IAI47_05205at 1100.734 kb on - strand, within IAI47_05205at 1100.734 kb on - strand, within IAI47_05205at 1100.734 kb on - strand, within IAI47_05205at 1100.734 kb on - strand, within IAI47_05205at 1100.734 kb on - strand, within IAI47_05205at 1100.734 kb on - strand, within IAI47_05205at 1100.831 kb on - strand, within IAI47_05205at 1100.831 kb on - strand, within IAI47_05205at 1100.848 kb on + strand, within IAI47_05205at 1100.849 kb on - strand, within IAI47_05205at 1100.866 kb on + strand, within IAI47_05205at 1100.866 kb on + strand, within IAI47_05205at 1100.866 kb on + strand, within IAI47_05205at 1100.866 kb on + strand, within IAI47_05205at 1100.866 kb on + strand, within IAI47_05205at 1100.867 kb on - strand, within IAI47_05205at 1100.896 kb on + strand, within IAI47_05205at 1100.897 kb on - strand, within IAI47_05205at 1100.939 kb on + strand, within IAI47_05205at 1100.940 kb on - strand, within IAI47_05205at 1100.940 kb on - strand, within IAI47_05205at 1100.952 kb on + strand, within IAI47_05205at 1100.952 kb on + strand, within IAI47_05205at 1100.952 kb on + strand, within IAI47_05205at 1100.953 kb on - strand, within IAI47_05205at 1100.991 kb on + strand, within IAI47_05205at 1100.991 kb on + strand, within IAI47_05205at 1100.992 kb on - strand, within IAI47_05205at 1100.992 kb on - strand, within IAI47_05205at 1101.014 kb on - strand, within IAI47_05205at 1101.014 kb on - strand, within IAI47_05205at 1101.036 kb on + strand, within IAI47_05205at 1101.036 kb on + strand, within IAI47_05205at 1101.036 kb on + strand, within IAI47_05205at 1101.036 kb on + strand, within IAI47_05205at 1101.037 kb on - strand, within IAI47_05205at 1101.037 kb on - strand, within IAI47_05205at 1101.037 kb on - strand, within IAI47_05205

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3
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1,098,370 + IAI47_05190 0.33 +2.5
1,098,413 - IAI47_05190 0.36 +0.0
1,098,448 - IAI47_05190 0.39 -0.6
1,098,538 + IAI47_05190 0.46 -0.0
1,098,538 + IAI47_05190 0.46 -0.2
1,098,599 + IAI47_05190 0.51 +0.4
1,098,599 + IAI47_05190 0.51 +0.5
1,098,600 - IAI47_05190 0.51 +0.2
1,098,600 - IAI47_05190 0.51 +0.8
1,098,684 + IAI47_05190 0.58 +1.0
1,098,806 + IAI47_05190 0.67 -2.0
1,098,806 + IAI47_05190 0.67 -0.4
1,098,807 - IAI47_05190 0.67 +0.8
1,098,807 - IAI47_05190 0.67 +3.2
1,098,807 - IAI47_05190 0.67 -0.3
1,098,807 - IAI47_05190 0.67 +0.2
1,098,807 - IAI47_05190 0.67 +0.0
1,098,845 + IAI47_05190 0.70 -0.8
1,098,846 - IAI47_05190 0.70 -0.4
1,098,968 + IAI47_05190 0.80 +1.2
1,098,968 + IAI47_05190 0.80 -0.4
1,098,968 + IAI47_05190 0.80 -1.6
1,098,969 - IAI47_05190 0.80 +0.7
1,098,969 - IAI47_05190 0.80 -0.3
1,099,022 + IAI47_05190 0.84 +0.0
1,099,022 + IAI47_05190 0.84 +0.5
1,099,022 + IAI47_05190 0.84 -0.4
1,099,023 - IAI47_05190 0.84 +1.0
1,099,023 - IAI47_05190 0.84 -0.9
1,099,094 - IAI47_05190 0.89 +0.4
1,099,168 + +0.2
1,099,293 + +1.1
1,099,293 + -0.8
1,099,293 + -0.3
1,099,294 - -1.1
1,099,370 - -0.4
1,099,370 - -0.4
1,099,468 + IAI47_05195 0.19 -1.4
1,099,468 + IAI47_05195 0.19 -1.4
1,099,469 - IAI47_05195 0.20 -1.4
1,099,474 + IAI47_05195 0.20 -2.6
1,099,698 + IAI47_05195 0.52 -1.4
1,099,764 + IAI47_05195 0.61 -0.5
1,099,847 + IAI47_05195 0.73 -2.4
1,100,016 + -0.8
1,100,036 - +0.2
1,100,082 - IAI47_05200 0.14 +1.2
1,100,097 + IAI47_05200 0.18 +0.0
1,100,127 + IAI47_05200 0.27 +0.2
1,100,128 - IAI47_05200 0.27 -0.8
1,100,182 + IAI47_05200 0.43 +0.2
1,100,183 - IAI47_05200 0.44 -1.3
1,100,196 - IAI47_05200 0.47 -0.4
1,100,196 - IAI47_05200 0.47 -0.7
1,100,196 - IAI47_05200 0.47 +0.2
1,100,205 + IAI47_05200 0.50 -1.8
1,100,238 + IAI47_05200 0.60 +0.9
1,100,281 + IAI47_05200 0.72 +2.0
1,100,281 + IAI47_05200 0.72 -0.1
1,100,281 + IAI47_05200 0.72 -0.1
1,100,281 + IAI47_05200 0.72 +0.8
1,100,281 + IAI47_05200 0.72 +0.8
1,100,281 + IAI47_05200 0.72 +0.5
1,100,281 + IAI47_05200 0.72 -0.7
1,100,282 - IAI47_05200 0.73 -1.0
1,100,282 - IAI47_05200 0.73 -1.1
1,100,427 + -0.5
1,100,427 + +1.5
1,100,440 - +0.2
1,100,446 + +0.5
1,100,446 + -0.0
1,100,446 + -0.6
1,100,447 - -1.8
1,100,447 - -0.8
1,100,447 - +0.2
1,100,459 + -0.0
1,100,459 + +1.4
1,100,459 + +0.5
1,100,459 + -0.6
1,100,480 - -0.5
1,100,645 + IAI47_05205 0.15 -0.2
1,100,671 + IAI47_05205 0.17 +1.8
1,100,672 - IAI47_05205 0.17 -0.3
1,100,672 - IAI47_05205 0.17 -0.4
1,100,686 - IAI47_05205 0.18 -1.4
1,100,699 - IAI47_05205 0.19 -0.9
1,100,715 + IAI47_05205 0.20 -0.0
1,100,715 + IAI47_05205 0.20 -2.1
1,100,715 + IAI47_05205 0.20 -0.1
1,100,715 + IAI47_05205 0.20 +2.5
1,100,715 + IAI47_05205 0.20 -1.9
1,100,716 - IAI47_05205 0.20 -0.1
1,100,716 - IAI47_05205 0.20 +0.0
1,100,716 - IAI47_05205 0.20 +0.2
1,100,716 - IAI47_05205 0.20 -0.8
1,100,733 + IAI47_05205 0.21 -0.6
1,100,733 + IAI47_05205 0.21 -0.1
1,100,733 + IAI47_05205 0.21 +1.2
1,100,733 + IAI47_05205 0.21 -0.4
1,100,733 + IAI47_05205 0.21 +1.2
1,100,733 + IAI47_05205 0.21 -0.4
1,100,734 - IAI47_05205 0.21 +0.4
1,100,734 - IAI47_05205 0.21 -0.1
1,100,734 - IAI47_05205 0.21 +0.2
1,100,734 - IAI47_05205 0.21 -1.0
1,100,734 - IAI47_05205 0.21 -0.9
1,100,734 - IAI47_05205 0.21 -1.1
1,100,831 - IAI47_05205 0.28 +0.1
1,100,831 - IAI47_05205 0.28 -1.4
1,100,848 + IAI47_05205 0.29 +0.2
1,100,849 - IAI47_05205 0.29 +1.2
1,100,866 + IAI47_05205 0.30 +1.2
1,100,866 + IAI47_05205 0.30 -1.5
1,100,866 + IAI47_05205 0.30 -0.8
1,100,866 + IAI47_05205 0.30 -0.4
1,100,866 + IAI47_05205 0.30 -0.7
1,100,867 - IAI47_05205 0.30 +0.2
1,100,896 + IAI47_05205 0.32 +1.8
1,100,897 - IAI47_05205 0.32 -0.4
1,100,939 + IAI47_05205 0.35 -0.9
1,100,940 - IAI47_05205 0.35 +0.7
1,100,940 - IAI47_05205 0.35 +0.5
1,100,952 + IAI47_05205 0.36 +0.4
1,100,952 + IAI47_05205 0.36 -0.9
1,100,952 + IAI47_05205 0.36 -0.8
1,100,953 - IAI47_05205 0.36 +0.3
1,100,991 + IAI47_05205 0.39 +0.0
1,100,991 + IAI47_05205 0.39 +0.2
1,100,992 - IAI47_05205 0.39 +0.1
1,100,992 - IAI47_05205 0.39 +0.6
1,101,014 - IAI47_05205 0.40 -0.2
1,101,014 - IAI47_05205 0.40 -0.0
1,101,036 + IAI47_05205 0.42 +0.7
1,101,036 + IAI47_05205 0.42 +0.2
1,101,036 + IAI47_05205 0.42 -2.0
1,101,036 + IAI47_05205 0.42 +0.0
1,101,037 - IAI47_05205 0.42 +0.7
1,101,037 - IAI47_05205 0.42 -0.9
1,101,037 - IAI47_05205 0.42 +0.1

Or see this region's nucleotide sequence