Strain Fitness in Pantoea sp. MT58 around IAI47_05155

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
1,087,478	+		IAI47_05150	0.36	-0.8
1,087,478	+		IAI47_05150	0.36	-0.8
1,087,478	+		IAI47_05150	0.36	-1.0
1,087,478	+		IAI47_05150	0.36	-0.5
1,087,479	-		IAI47_05150	0.36	+0.2
1,087,515	+		IAI47_05150	0.38	+0.2
1,087,547	+		IAI47_05150	0.40	+0.2
1,087,547	+		IAI47_05150	0.40	+0.2
1,087,547	+		IAI47_05150	0.40	-0.1
1,087,698	+		IAI47_05150	0.50	-0.8
1,087,698	+		IAI47_05150	0.50	-1.0
1,087,698	+		IAI47_05150	0.50	-0.8
1,087,698	+		IAI47_05150	0.50	+0.6
1,087,699	-		IAI47_05150	0.50	-0.4
1,087,699	-		IAI47_05150	0.50	+0.9
1,087,699	-		IAI47_05150	0.50	-1.1
1,087,699	-		IAI47_05150	0.50	-1.4
1,087,699	-		IAI47_05150	0.50	-0.5
1,087,718	+		IAI47_05150	0.52	-0.5
1,087,718	+		IAI47_05150	0.52	+0.2
1,087,719	-		IAI47_05150	0.52	-0.2
1,087,719	-		IAI47_05150	0.52	+0.8
1,087,719	-		IAI47_05150	0.52	-1.1
1,087,743	+		IAI47_05150	0.53	+0.2
1,087,744	-		IAI47_05150	0.53	+0.4
1,087,744	-		IAI47_05150	0.53	-3.1
1,087,744	-		IAI47_05150	0.53	-0.9
1,087,820	+		IAI47_05150	0.58	+0.2
1,087,841	+		IAI47_05150	0.60	-0.1
1,087,929	-		IAI47_05150	0.65	-1.4
1,087,929	-		IAI47_05150	0.65	+0.2
1,087,929	-		IAI47_05150	0.65	-0.4
1,088,076	+		IAI47_05150	0.75	-1.2
1,088,077	-		IAI47_05150	0.75	-2.6
1,088,185	-		IAI47_05150	0.82	-1.1
1,088,185	-		IAI47_05150	0.82	-1.1
1,088,332	-				+0.8
1,088,377	+				-0.8
1,088,377	+				+0.5
1,088,377	+				-1.4
1,088,377	+				-0.2
1,088,377	+				-0.7
1,088,378	-				-0.2
1,088,378	-				-1.1
1,088,378	-				+1.3
1,088,378	-				-1.6
1,088,382	+				+1.4
1,088,436	+				-1.2
1,088,442	+				+0.1
1,088,457	+				-1.0
1,088,457	+				+0.2
1,088,458	-				+0.7
1,088,464	+				-0.1
1,088,464	+				+1.6
1,088,464	+				-0.4
1,088,491	+				-1.8
1,088,491	+				-1.5
1,088,491	+				-0.8
1,088,491	+				+0.9
1,088,491	+				-1.7
1,088,491	+				+0.2
1,088,491	+				-1.8
1,088,492	-				+0.5
1,088,492	-				+0.2
1,088,492	-				-1.6
1,088,492	-				-1.6
1,088,492	-				-0.8
1,088,492	-				-1.8
1,088,497	+				-2.1
1,088,497	+				-0.4
1,088,497	+				-0.5
1,088,497	+				-2.6
1,088,497	+				-1.8
1,088,497	+				-1.5
1,088,497	+				+1.2
1,088,497	+				-1.4
1,088,497	+				+0.2
1,088,498	-				-1.7
1,088,498	-				-0.4
1,088,498	-				-0.2
1,088,498	-				-1.2
1,088,498	-				-1.8
1,088,498	-				-0.5
1,088,498	-				-1.8
1,088,498	-				-1.8
1,088,498	-				-2.7
1,088,498	-				-2.4
1,088,498	-				-2.0
1,088,523	-				-0.8
1,088,545	+				-0.5
1,088,545	+				-0.8
1,088,545	+				-0.4
1,088,546	-				-2.9
1,088,546	-				-1.6
1,088,546	-				-1.4
1,088,546	-				-1.0
1,088,553	-				-2.6
1,088,553	-				-0.1
1,088,553	-				-1.7
1,088,588	+				-1.3
1,088,589	-				-1.9
1,088,589	-				-1.9
1,088,603	+				-1.4
1,088,604	-				-1.8
1,088,604	-				-0.6
1,088,604	-				+0.2
1,088,609	+				-2.6
1,088,609	+				-0.8
1,088,609	+				+0.9
1,088,609	+				-1.9
1,088,609	+				-3.3
1,088,609	+				-1.4
1,088,610	-				-2.1
1,088,610	-				-3.0
1,088,610	-				-1.4
1,088,610	-				-2.0
1,088,610	-				+0.2
1,088,619	+				+0.2
1,088,620	-				+0.5
1,088,620	-				-2.0
1,088,620	-				-0.8
1,088,621	+				-1.1
1,088,621	+				-1.4
1,088,621	+				-1.7
1,088,621	+				-2.8
1,088,621	+				-1.2
1,088,621	+				-0.8
1,088,621	+				-0.1
1,088,622	-				-1.5
1,088,622	-				-2.8
1,088,622	-				-1.4
1,088,622	-				-1.2
1,088,622	-				-2.2
1,088,682	-		IAI47_05155	0.11	-1.0
1,088,721	-		IAI47_05155	0.13	-0.9
1,088,742	-		IAI47_05155	0.14	-2.1
1,088,742	-		IAI47_05155	0.14	-0.2
1,088,742	-		IAI47_05155	0.14	-1.0
1,088,765	-		IAI47_05155	0.15	-1.4
1,088,777	+		IAI47_05155	0.15	-0.0
1,088,778	-		IAI47_05155	0.15	-0.1
1,088,778	-		IAI47_05155	0.15	-0.8
1,088,778	-		IAI47_05155	0.15	-1.4
1,088,793	-		IAI47_05155	0.16	-1.6
1,088,824	-		IAI47_05155	0.18	-1.4
1,088,824	-		IAI47_05155	0.18	-0.1
1,088,824	-		IAI47_05155	0.18	-1.2
1,088,824	-		IAI47_05155	0.18	-0.5
1,088,859	+		IAI47_05155	0.19	-1.0
1,088,866	+		IAI47_05155	0.20	-1.0
1,088,866	-		IAI47_05155	0.20	-1.9
1,088,866	-		IAI47_05155	0.20	-1.1
1,088,879	+		IAI47_05155	0.20	-0.1
1,088,879	+		IAI47_05155	0.20	-1.1
1,088,880	-		IAI47_05155	0.20	-0.1
1,088,880	-		IAI47_05155	0.20	-2.2
1,088,880	-		IAI47_05155	0.20	-1.5
1,088,880	-		IAI47_05155	0.20	-1.4
1,088,880	-		IAI47_05155	0.20	-2.0
1,088,880	-		IAI47_05155	0.20	-2.3
1,088,880	-		IAI47_05155	0.20	-1.5
1,088,881	+		IAI47_05155	0.20	-1.3
1,088,881	+		IAI47_05155	0.20	-0.8
1,088,882	-		IAI47_05155	0.20	-2.5
1,088,882	-		IAI47_05155	0.20	-1.1
1,088,920	-		IAI47_05155	0.22	-2.0
1,088,930	+		IAI47_05155	0.23	-2.0
1,088,945	+		IAI47_05155	0.23	+0.2
1,088,946	-		IAI47_05155	0.23	-0.4
1,088,946	-		IAI47_05155	0.23	-1.5
1,088,986	+		IAI47_05155	0.25	-4.4
1,088,986	+		IAI47_05155	0.25	-1.9
1,088,986	+		IAI47_05155	0.25	-0.8
1,088,986	+		IAI47_05155	0.25	-1.6
1,088,986	+		IAI47_05155	0.25	+0.2
1,088,986	+		IAI47_05155	0.25	-2.6
1,088,987	-		IAI47_05155	0.25	-1.8
1,088,987	-		IAI47_05155	0.25	-1.5
1,088,987	-		IAI47_05155	0.25	-1.1
1,088,987	-		IAI47_05155	0.25	-1.4
1,088,987	-		IAI47_05155	0.25	-1.3
1,088,987	-		IAI47_05155	0.25	-0.9
1,089,059	+		IAI47_05155	0.29	+0.6
1,089,118	+		IAI47_05155	0.32	-0.8
1,089,118	+		IAI47_05155	0.32	-1.0
1,089,118	+		IAI47_05155	0.32	-2.8
1,089,118	+		IAI47_05155	0.32	-2.7
1,089,119	-		IAI47_05155	0.32	+0.2
1,089,119	-		IAI47_05155	0.32	-1.4
1,089,119	-		IAI47_05155	0.32	-1.6
1,089,119	-		IAI47_05155	0.32	-2.4
1,089,119	-		IAI47_05155	0.32	-1.1
1,089,119	-		IAI47_05155	0.32	-0.8
1,089,127	+		IAI47_05155	0.32	-0.8
1,089,127	+		IAI47_05155	0.32	+0.4
1,089,128	-		IAI47_05155	0.32	-0.6
1,089,128	-		IAI47_05155	0.32	-2.1
1,089,128	-		IAI47_05155	0.32	-0.8
1,089,128	-		IAI47_05155	0.32	-1.2
1,089,128	-		IAI47_05155	0.32	-1.8
1,089,128	-		IAI47_05155	0.32	-2.3
1,089,149	+		IAI47_05155	0.33	-2.0
1,089,150	-		IAI47_05155	0.33	-1.6
1,089,150	-		IAI47_05155	0.33	-1.4
1,089,167	+		IAI47_05155	0.34	-1.0
1,089,292	+		IAI47_05155	0.40	-1.4
1,089,292	+		IAI47_05155	0.40	-2.3
1,089,293	-		IAI47_05155	0.40	-2.1
1,089,293	-		IAI47_05155	0.40	-1.4
1,089,300	-		IAI47_05155	0.41	-1.6
1,089,300	-		IAI47_05155	0.41	-3.3
1,089,357	-		IAI47_05155	0.43	-0.5
1,089,358	+		IAI47_05155	0.43	-1.4
1,089,358	+		IAI47_05155	0.43	-1.0
1,089,358	+		IAI47_05155	0.43	+0.4
1,089,358	+		IAI47_05155	0.43	-3.6
1,089,358	+		IAI47_05155	0.43	-2.1
1,089,359	-		IAI47_05155	0.43	-1.1
1,089,359	-		IAI47_05155	0.43	-2.2
1,089,383	+		IAI47_05155	0.45	-1.1
1,089,383	+		IAI47_05155	0.45	-1.6
1,089,383	+		IAI47_05155	0.45	-1.8
1,089,384	-		IAI47_05155	0.45	-1.5
1,089,409	+		IAI47_05155	0.46	-2.4
1,089,409	+		IAI47_05155	0.46	-0.4
1,089,409	+		IAI47_05155	0.46	-2.3
1,089,409	+		IAI47_05155	0.46	-1.3
1,089,409	+		IAI47_05155	0.46	-2.5
1,089,410	-		IAI47_05155	0.46	-1.4
1,089,410	-		IAI47_05155	0.46	-0.2
1,089,485	+		IAI47_05155	0.50	-1.8
1,089,485	+		IAI47_05155	0.50	-0.8
1,089,485	+		IAI47_05155	0.50	+0.2
1,089,485	+		IAI47_05155	0.50	-2.3
1,089,486	-		IAI47_05155	0.50	-1.0
1,089,486	-		IAI47_05155	0.50	-1.8
1,089,486	-		IAI47_05155	0.50	-1.7
1,089,490	+		IAI47_05155	0.50	-2.1
1,089,491	-		IAI47_05155	0.50	-2.6
1,089,491	-		IAI47_05155	0.50	-1.8
1,089,491	-		IAI47_05155	0.50	-1.0
1,089,496	+		IAI47_05155	0.50	-1.9
1,089,496	+		IAI47_05155	0.50	-2.3
1,089,496	+		IAI47_05155	0.50	-1.0
1,089,496	+		IAI47_05155	0.50	-2.4
1,089,496	+		IAI47_05155	0.50	-1.1
1,089,496	+		IAI47_05155	0.50	-1.4
1,089,497	-		IAI47_05155	0.50	-1.4
1,089,499	+		IAI47_05155	0.50	-1.4
1,089,500	-		IAI47_05155	0.50	-1.8
1,089,500	-		IAI47_05155	0.50	-1.0
1,089,500	-		IAI47_05155	0.50	-1.8
1,089,500	-		IAI47_05155	0.50	-1.5
1,089,519	-		IAI47_05155	0.51	-0.8
1,089,674	+		IAI47_05155	0.59	-0.2
1,089,689	+		IAI47_05155	0.59	-1.1
1,089,690	-		IAI47_05155	0.60	-2.1
1,089,734	-		IAI47_05155	0.62	-3.4
1,089,744	+		IAI47_05155	0.62	-0.2
1,089,826	+		IAI47_05155	0.66	-2.4
1,089,827	-		IAI47_05155	0.66	-3.5
1,089,827	-		IAI47_05155	0.66	-0.6
1,089,857	-		IAI47_05155	0.68	-2.2
1,089,857	-		IAI47_05155	0.68	-1.4
1,089,857	-		IAI47_05155	0.68	-0.8
1,089,880	+		IAI47_05155	0.69	-0.8
1,089,880	+		IAI47_05155	0.69	-2.4
1,089,881	-		IAI47_05155	0.69	-3.8
1,089,881	-		IAI47_05155	0.69	-2.3
1,089,881	-		IAI47_05155	0.69	-1.5
1,089,881	-		IAI47_05155	0.69	-1.9
1,089,897	-		IAI47_05155	0.70	-1.0
1,089,897	-		IAI47_05155	0.70	-1.6
1,089,975	-		IAI47_05155	0.73	-3.4
1,090,019	-		IAI47_05155	0.75	-2.9
1,090,025	+		IAI47_05155	0.76	-2.1
1,090,025	+		IAI47_05155	0.76	-0.8
1,090,025	+		IAI47_05155	0.76	-1.1
1,090,025	+		IAI47_05155	0.76	-2.1
1,090,026	-		IAI47_05155	0.76	-0.8
1,090,026	-		IAI47_05155	0.76	-1.6
1,090,026	-		IAI47_05155	0.76	-3.4
1,090,026	-		IAI47_05155	0.76	-1.8
1,090,040	+		IAI47_05155	0.77	-1.7
1,090,040	+		IAI47_05155	0.77	-0.5
1,090,047	+		IAI47_05155	0.77	-1.9
1,090,048	-		IAI47_05155	0.77	-1.4
1,090,057	+		IAI47_05155	0.77	-0.4
1,090,057	+		IAI47_05155	0.77	-0.8
1,090,057	+		IAI47_05155	0.77	-1.4
1,090,057	+		IAI47_05155	0.77	-2.4
1,090,057	+		IAI47_05155	0.77	-1.5
1,090,057	+		IAI47_05155	0.77	-2.4
1,090,057	+		IAI47_05155	0.77	-1.7
1,090,057	+		IAI47_05155	0.77	-0.8
1,090,058	-		IAI47_05155	0.77	-1.1
1,090,058	-		IAI47_05155	0.77	-0.2
1,090,058	-		IAI47_05155	0.77	-3.1
1,090,058	-		IAI47_05155	0.77	+0.2
1,090,058	-		IAI47_05155	0.77	+0.8
1,090,063	+		IAI47_05155	0.78	-2.6
1,090,063	+		IAI47_05155	0.78	-0.4
1,090,063	+		IAI47_05155	0.78	-1.4
1,090,063	+		IAI47_05155	0.78	-0.4
1,090,064	-		IAI47_05155	0.78	-1.4
1,090,064	-		IAI47_05155	0.78	-1.4
1,090,064	-		IAI47_05155	0.78	-0.6
1,090,064	-		IAI47_05155	0.78	-1.2
1,090,147	+		IAI47_05155	0.82	-1.1
1,090,147	+		IAI47_05155	0.82	-1.5
1,090,147	+		IAI47_05155	0.82	-1.6
1,090,148	-		IAI47_05155	0.82	+0.2
1,090,148	-		IAI47_05155	0.82	-2.6
1,090,211	+		IAI47_05155	0.85	-1.4
1,090,211	+		IAI47_05155	0.85	-2.6
1,090,211	+		IAI47_05155	0.85	-0.5
1,090,212	-		IAI47_05155	0.85	-2.4
1,090,212	-		IAI47_05155	0.85	-0.6
1,090,238	+		IAI47_05155	0.86	-1.0
1,090,239	-		IAI47_05155	0.86	-2.6
1,090,240	+		IAI47_05155	0.86	-2.0
1,090,240	+		IAI47_05155	0.86	-1.4
1,090,240	+		IAI47_05155	0.86	-2.0
1,090,240	+		IAI47_05155	0.86	-1.2
1,090,241	-		IAI47_05155	0.86	+0.2
1,090,241	-		IAI47_05155	0.86	-1.4
1,090,241	-		IAI47_05155	0.86	-1.5
1,090,241	-		IAI47_05155	0.86	-2.5
1,090,241	-		IAI47_05155	0.86	-3.9
1,090,241	-		IAI47_05155	0.86	-1.8
1,090,373	+				-0.8
1,090,373	+				-1.6
1,090,374	-				-0.8
1,090,375	+				-0.2
1,090,376	-				-2.6
1,090,391	+				-0.0
1,090,399	+				-1.8
1,090,399	+				-1.8
1,090,400	-				-0.7
1,090,472	+				+0.2
1,090,473	-				-2.1
1,090,488	+				-2.6
1,090,489	-				-0.8
1,090,489	-				-0.2
1,090,502	+				-0.2
1,090,502	+				+0.2
1,090,502	+				-0.9
1,090,502	+				-1.4
1,090,503	-				-0.5
1,090,504	+				-1.2
1,090,504	+				-1.4
1,090,504	+				-0.5
1,090,505	-				-0.3
1,090,537	-				-2.1
1,090,537	-				-0.3
1,090,537	-				+0.6
1,090,575	+				-0.4
1,090,575	+				-0.3
1,090,576	-				+1.4
1,090,586	+				+1.8
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1,091,048	+		IAI47_05160	0.18	-0.1
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1,091,048	+		IAI47_05160	0.18	+1.2
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1,091,314	-		IAI47_05160	0.31	-0.1
1,091,450	+		IAI47_05160	0.37	+2.2
1,091,451	-		IAI47_05160	0.37	-0.0