Strain Fitness in Pantoea sp. MT58 around IAI47_05080

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
1,072,975	+				+0.2
1,073,103	+		IAI47_05080	0.25	-0.1
1,073,128	+		IAI47_05080	0.36	-0.5
1,073,129	-		IAI47_05080	0.37	-0.4
1,073,174	+		IAI47_05080	0.57	+0.2
1,073,200	+		IAI47_05080	0.69	-0.2
1,073,200	+		IAI47_05080	0.69	+0.5
1,073,243	+		IAI47_05080	0.88	-0.0
1,073,243	+		IAI47_05080	0.88	-0.1
1,073,243	+		IAI47_05080	0.88	+0.2
1,073,244	-		IAI47_05080	0.89	+0.8
1,073,244	-		IAI47_05080	0.89	-0.9
1,073,244	-		IAI47_05080	0.89	+0.7
1,073,266	+				+0.2
1,073,282	+				+0.9
1,073,282	+				+0.6
1,073,283	-				+0.2
1,073,283	-				+1.5
1,073,288	+				-0.6
1,073,288	+				+0.2
1,073,288	+				+0.8
1,073,289	-				+0.5
1,073,289	-				+1.4
1,073,289	-				-0.8
1,073,349	+				+1.5
1,073,365	+				-1.1
1,073,365	+				-0.8
1,073,366	-				+0.3
1,073,366	-				-0.2
1,073,366	-				-0.5
1,073,366	-				+0.8
1,073,366	-				+0.5
1,073,394	-				+1.8
1,073,394	-				+0.2
1,073,474	+				-2.1
1,073,474	+				-0.2
1,073,474	+				+0.2
1,073,474	+				-0.2
1,073,474	+				+0.8
1,073,474	+				-0.0
1,073,476	+				+1.3
1,073,477	-				-0.1
1,073,540	+				+1.2
1,073,540	+				+0.2
1,073,540	+				+0.1
1,073,540	+				+1.3
1,073,540	+				+0.0
1,073,540	+				+0.6
1,073,540	+				-1.1
1,073,540	+				+0.4
1,073,541	-				+0.1
1,073,541	-				+0.3
1,073,541	-				+0.7
1,073,541	-				+0.7
1,073,541	-				+0.5
1,073,541	-				-0.4
1,073,559	+				+3.5
1,073,559	+				-0.1
1,073,571	+				+0.2
1,073,571	+				+1.1
1,073,571	+				-1.8
1,073,571	+				-0.0
1,073,572	-				+0.0
1,073,572	-				-0.5
1,073,578	+				-0.3
1,073,578	+				+0.2
1,073,579	-				+0.2
1,073,711	+				+0.4
1,073,728	+				+1.2
1,073,729	-				-0.2
1,073,734	+				+2.8
1,073,734	+				+1.0
1,073,734	+				+0.4
1,073,734	+				-1.0
1,073,735	-				+0.9
1,073,735	-				-0.4
1,073,735	-				-0.2
1,073,735	-				-0.4
1,073,923	+		IAI47_05085	0.14	+0.0
1,073,924	-		IAI47_05085	0.14	-0.6
1,073,924	-		IAI47_05085	0.14	+1.2
1,073,924	-		IAI47_05085	0.14	-0.7
1,073,936	-		IAI47_05085	0.15	+0.2
1,073,936	-		IAI47_05085	0.15	-0.7
1,073,960	+		IAI47_05085	0.16	-0.0
1,073,961	-		IAI47_05085	0.16	-0.6
1,074,028	+		IAI47_05085	0.18	-0.4
1,074,028	+		IAI47_05085	0.18	+1.2
1,074,054	+		IAI47_05085	0.19	-0.2
1,074,054	+		IAI47_05085	0.19	+0.6
1,074,055	-		IAI47_05085	0.19	+0.7
1,074,055	-		IAI47_05085	0.19	+1.5
1,074,055	-		IAI47_05085	0.19	-1.1
1,074,100	+		IAI47_05085	0.21	-0.0
1,074,100	+		IAI47_05085	0.21	+0.0
1,074,101	-		IAI47_05085	0.21	-0.6
1,074,101	-		IAI47_05085	0.21	-0.3
1,074,104	+		IAI47_05085	0.21	-0.3
1,074,104	+		IAI47_05085	0.21	-0.8
1,074,104	+		IAI47_05085	0.21	-1.2
1,074,104	+		IAI47_05085	0.21	+1.2
1,074,105	-		IAI47_05085	0.22	+0.8
1,074,105	-		IAI47_05085	0.22	+1.0
1,074,105	-		IAI47_05085	0.22	+0.7
1,074,206	-		IAI47_05085	0.26	-1.4
1,074,255	+		IAI47_05085	0.28	+0.2
1,074,255	+		IAI47_05085	0.28	+0.4
1,074,256	-		IAI47_05085	0.28	+1.8
1,074,256	-		IAI47_05085	0.28	+0.6
1,074,268	+		IAI47_05085	0.28	-0.8