Experiment: Ying_AminoAcid20 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04130 and IAI47_04135 are separated by 76 nucleotides IAI47_04135 and IAI47_04140 are separated by 149 nucleotides IAI47_04140 and IAI47_04145 are separated by 94 nucleotides
IAI47_04130: IAI47_04130 - CTP synthase (glutamine hydrolyzing), at 867,343 to 868,980
_04130
IAI47_04135: IAI47_04135 - phosphopyruvate hydratase, at 869,057 to 870,352
_04135
IAI47_04140: IAI47_04140 - 7-carboxy-7-deazaguanine synthase QueE, at 870,502 to 871,173
_04140
IAI47_04145: IAI47_04145 - 6-carboxytetrahydropterin synthase QueD, at 871,268 to 871,627
_04145
Position (kb) 869
870
871 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 868.970 kb on + strand at 868.978 kb on + strand at 868.978 kb on + strand at 868.978 kb on + strand at 869.023 kb on + strand at 869.023 kb on + strand at 869.023 kb on + strand at 870.310 kb on + strand at 870.339 kb on + strand at 870.340 kb on + strand at 870.340 kb on + strand at 870.351 kb on - strand at 870.351 kb on - strand at 870.351 kb on - strand at 870.389 kb on + strand at 870.390 kb on - strand at 870.390 kb on - strand at 870.467 kb on + strand at 870.467 kb on + strand at 870.467 kb on + strand at 870.467 kb on + strand at 870.467 kb on + strand at 870.467 kb on + strand at 870.468 kb on - strand at 870.468 kb on - strand at 870.468 kb on - strand at 870.468 kb on - strand at 870.468 kb on - strand at 870.550 kb on + strand at 870.550 kb on + strand at 870.551 kb on - strand at 870.551 kb on - strand at 870.551 kb on - strand at 870.553 kb on + strand at 870.553 kb on + strand at 870.553 kb on + strand at 870.553 kb on + strand at 870.553 kb on + strand at 870.554 kb on - strand at 870.554 kb on - strand at 870.554 kb on - strand at 870.554 kb on - strand at 870.554 kb on - strand at 870.554 kb on - strand at 870.554 kb on - strand at 870.554 kb on - strand at 870.554 kb on - strand at 870.554 kb on - strand at 870.584 kb on + strand, within IAI47_04140 at 870.584 kb on + strand, within IAI47_04140 at 870.584 kb on + strand, within IAI47_04140 at 870.585 kb on - strand, within IAI47_04140 at 870.606 kb on + strand, within IAI47_04140 at 870.606 kb on + strand, within IAI47_04140 at 870.606 kb on + strand, within IAI47_04140 at 870.606 kb on + strand, within IAI47_04140 at 870.606 kb on + strand, within IAI47_04140 at 870.606 kb on + strand, within IAI47_04140 at 870.606 kb on + strand, within IAI47_04140 at 870.607 kb on - strand, within IAI47_04140 at 870.607 kb on - strand, within IAI47_04140 at 870.607 kb on - strand, within IAI47_04140 at 870.607 kb on - strand, within IAI47_04140 at 870.669 kb on + strand, within IAI47_04140 at 870.669 kb on + strand, within IAI47_04140 at 870.774 kb on + strand, within IAI47_04140 at 870.797 kb on - strand, within IAI47_04140 at 870.935 kb on - strand, within IAI47_04140 at 870.935 kb on - strand, within IAI47_04140 at 870.935 kb on - strand, within IAI47_04140 at 871.034 kb on + strand, within IAI47_04140 at 871.034 kb on + strand, within IAI47_04140 at 871.034 kb on + strand, within IAI47_04140 at 871.034 kb on + strand, within IAI47_04140 at 871.034 kb on + strand, within IAI47_04140 at 871.035 kb on - strand, within IAI47_04140 at 871.035 kb on - strand, within IAI47_04140 at 871.044 kb on + strand, within IAI47_04140 at 871.044 kb on + strand, within IAI47_04140 at 871.044 kb on + strand, within IAI47_04140 at 871.044 kb on + strand, within IAI47_04140 at 871.045 kb on - strand, within IAI47_04140 at 871.045 kb on - strand, within IAI47_04140 at 871.064 kb on + strand, within IAI47_04140 at 871.064 kb on + strand, within IAI47_04140 at 871.064 kb on + strand, within IAI47_04140 at 871.064 kb on + strand, within IAI47_04140 at 871.126 kb on - strand at 871.126 kb on - strand at 871.152 kb on + strand at 871.153 kb on - strand at 871.153 kb on - strand at 871.156 kb on + strand at 871.156 kb on + strand at 871.156 kb on + strand at 871.156 kb on + strand at 871.157 kb on - strand at 871.164 kb on + strand at 871.176 kb on - strand at 871.181 kb on + strand at 871.181 kb on + strand at 871.182 kb on - strand at 871.182 kb on - strand at 871.193 kb on - strand at 871.236 kb on - strand at 871.236 kb on - strand at 871.269 kb on + strand at 871.322 kb on + strand, within IAI47_04145 at 871.322 kb on + strand, within IAI47_04145 at 871.323 kb on - strand, within IAI47_04145
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3 remove 868,970 + +0.1 868,978 + +1.5 868,978 + +0.2 868,978 + -0.4 869,023 + -0.9 869,023 + +0.4 869,023 + +0.1 870,310 + -3.1 870,339 + -1.2 870,340 + -3.0 870,340 + -0.6 870,351 - -0.0 870,351 - -1.0 870,351 - +0.2 870,389 + +0.2 870,390 - +0.2 870,390 - -0.4 870,467 + +0.5 870,467 + +0.8 870,467 + +0.8 870,467 + +0.2 870,467 + -1.0 870,467 + +0.2 870,468 - +0.6 870,468 - +0.9 870,468 - +0.2 870,468 - +0.2 870,468 - +0.2 870,550 + -2.1 870,550 + +2.8 870,551 - +0.6 870,551 - -0.5 870,551 - -1.0 870,553 + +0.8 870,553 + +0.9 870,553 + +0.5 870,553 + +0.9 870,553 + -0.0 870,554 - +1.2 870,554 - -0.0 870,554 - +1.2 870,554 - +0.4 870,554 - +0.2 870,554 - -0.1 870,554 - -1.7 870,554 - -0.4 870,554 - -0.1 870,554 - +0.5 870,584 + IAI47_04140 0.12 +0.9 870,584 + IAI47_04140 0.12 +1.2 870,584 + IAI47_04140 0.12 -0.0 870,585 - IAI47_04140 0.12 +0.9 870,606 + IAI47_04140 0.15 +1.2 870,606 + IAI47_04140 0.15 -0.7 870,606 + IAI47_04140 0.15 +0.2 870,606 + IAI47_04140 0.15 +0.6 870,606 + IAI47_04140 0.15 -0.0 870,606 + IAI47_04140 0.15 -1.6 870,606 + IAI47_04140 0.15 -0.7 870,607 - IAI47_04140 0.16 +0.6 870,607 - IAI47_04140 0.16 -0.9 870,607 - IAI47_04140 0.16 -0.4 870,607 - IAI47_04140 0.16 +0.2 870,669 + IAI47_04140 0.25 +0.1 870,669 + IAI47_04140 0.25 -0.2 870,774 + IAI47_04140 0.40 +0.5 870,797 - IAI47_04140 0.44 +0.1 870,935 - IAI47_04140 0.64 +1.0 870,935 - IAI47_04140 0.64 +0.4 870,935 - IAI47_04140 0.64 -1.4 871,034 + IAI47_04140 0.79 -0.2 871,034 + IAI47_04140 0.79 -0.2 871,034 + IAI47_04140 0.79 +0.6 871,034 + IAI47_04140 0.79 -0.8 871,034 + IAI47_04140 0.79 -0.5 871,035 - IAI47_04140 0.79 -0.4 871,035 - IAI47_04140 0.79 +0.2 871,044 + IAI47_04140 0.81 -0.2 871,044 + IAI47_04140 0.81 -0.0 871,044 + IAI47_04140 0.81 +0.6 871,044 + IAI47_04140 0.81 -1.4 871,045 - IAI47_04140 0.81 +1.2 871,045 - IAI47_04140 0.81 -0.1 871,064 + IAI47_04140 0.84 +2.2 871,064 + IAI47_04140 0.84 +0.1 871,064 + IAI47_04140 0.84 -0.8 871,064 + IAI47_04140 0.84 +0.6 871,126 - +0.2 871,126 - +1.1 871,152 + -1.0 871,153 - +0.6 871,153 - +1.1 871,156 + -0.9 871,156 + +0.8 871,156 + +0.1 871,156 + +0.1 871,157 - -0.1 871,164 + -0.8 871,176 - -1.4 871,181 + -1.0 871,181 + +0.8 871,182 - +0.3 871,182 - -1.4 871,193 - +0.0 871,236 - +0.2 871,236 - -0.8 871,269 + +0.5 871,322 + IAI47_04145 0.15 -0.8 871,322 + IAI47_04145 0.15 +0.2 871,323 - IAI47_04145 0.15 -0.2
Or see this region's nucleotide sequence