Strain Fitness in Pantoea sp. MT58 around IAI47_00655

Experiment: Ying_AminoAcid20 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_00650 and IAI47_00655 are separated by 92 nucleotidesIAI47_00655 and IAI47_00660 overlap by 8 nucleotides IAI47_00650: IAI47_00650 - lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase, at 139,583 to 140,857 _00650 IAI47_00655: IAI47_00655 - glycosyltransferase family 4 protein, at 140,950 to 142,083 _00655 IAI47_00660: IAI47_00660 - putative lipopolysaccharide heptosyltransferase III, at 142,076 to 143,152 _00660 Position (kb) 140 141 142 143Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 140.858 kb on - strandat 140.858 kb on - strandat 140.858 kb on - strandat 140.858 kb on - strandat 140.858 kb on - strandat 140.858 kb on - strandat 140.858 kb on - strandat 140.862 kb on - strandat 140.862 kb on - strandat 140.862 kb on - strandat 140.868 kb on - strandat 140.868 kb on - strandat 140.896 kb on - strandat 140.896 kb on - strandat 140.917 kb on - strandat 140.917 kb on - strandat 140.958 kb on + strandat 140.959 kb on - strandat 140.965 kb on + strandat 140.965 kb on + strandat 140.965 kb on + strandat 140.966 kb on - strandat 140.966 kb on - strandat 141.240 kb on + strand, within IAI47_00655at 141.273 kb on - strand, within IAI47_00655at 141.280 kb on + strand, within IAI47_00655at 141.325 kb on - strand, within IAI47_00655at 141.325 kb on - strand, within IAI47_00655at 141.464 kb on - strand, within IAI47_00655at 141.695 kb on + strand, within IAI47_00655at 141.703 kb on - strand, within IAI47_00655at 142.073 kb on - strandat 142.090 kb on - strandat 142.138 kb on - strandat 142.138 kb on - strandat 142.138 kb on - strandat 142.138 kb on - strandat 142.162 kb on + strandat 142.162 kb on + strandat 142.163 kb on - strandat 142.204 kb on + strand, within IAI47_00660at 142.205 kb on - strand, within IAI47_00660at 142.205 kb on - strand, within IAI47_00660at 142.267 kb on + strand, within IAI47_00660at 142.267 kb on + strand, within IAI47_00660at 142.267 kb on + strand, within IAI47_00660at 142.267 kb on + strand, within IAI47_00660at 142.268 kb on - strand, within IAI47_00660at 142.268 kb on - strand, within IAI47_00660at 142.322 kb on - strand, within IAI47_00660at 142.322 kb on - strand, within IAI47_00660at 142.418 kb on - strand, within IAI47_00660at 142.418 kb on - strand, within IAI47_00660at 142.445 kb on - strand, within IAI47_00660at 142.459 kb on + strand, within IAI47_00660at 142.459 kb on + strand, within IAI47_00660at 142.459 kb on + strand, within IAI47_00660at 142.459 kb on + strand, within IAI47_00660at 142.460 kb on - strand, within IAI47_00660at 142.460 kb on - strand, within IAI47_00660at 142.460 kb on - strand, within IAI47_00660at 142.531 kb on + strand, within IAI47_00660at 142.532 kb on - strand, within IAI47_00660at 142.532 kb on - strand, within IAI47_00660at 142.532 kb on - strand, within IAI47_00660at 142.532 kb on - strand, within IAI47_00660at 142.532 kb on - strand, within IAI47_00660at 142.532 kb on - strand, within IAI47_00660at 142.532 kb on - strand, within IAI47_00660at 142.564 kb on + strand, within IAI47_00660at 142.565 kb on - strand, within IAI47_00660at 142.565 kb on - strand, within IAI47_00660at 142.565 kb on - strand, within IAI47_00660at 142.565 kb on - strand, within IAI47_00660at 142.565 kb on - strand, within IAI47_00660at 142.565 kb on - strand, within IAI47_00660at 142.565 kb on - strand, within IAI47_00660at 142.565 kb on - strand, within IAI47_00660at 142.566 kb on + strand, within IAI47_00660at 142.566 kb on + strand, within IAI47_00660at 142.567 kb on - strand, within IAI47_00660at 142.567 kb on - strand, within IAI47_00660at 142.567 kb on - strand, within IAI47_00660at 142.567 kb on - strand, within IAI47_00660at 142.567 kb on - strand, within IAI47_00660at 142.567 kb on - strand, within IAI47_00660at 142.567 kb on - strand, within IAI47_00660at 142.567 kb on - strand, within IAI47_00660at 142.567 kb on - strand, within IAI47_00660at 142.567 kb on - strand, within IAI47_00660at 142.567 kb on - strand, within IAI47_00660at 142.567 kb on - strand, within IAI47_00660at 142.567 kb on - strand, within IAI47_00660at 142.567 kb on - strand, within IAI47_00660at 142.629 kb on + strand, within IAI47_00660at 142.629 kb on + strand, within IAI47_00660at 142.629 kb on + strand, within IAI47_00660at 142.630 kb on - strand, within IAI47_00660at 142.630 kb on - strand, within IAI47_00660at 142.652 kb on - strand, within IAI47_00660at 142.661 kb on - strand, within IAI47_00660at 142.661 kb on - strand, within IAI47_00660at 142.687 kb on + strand, within IAI47_00660at 142.687 kb on + strand, within IAI47_00660at 142.687 kb on + strand, within IAI47_00660at 142.687 kb on + strand, within IAI47_00660at 142.687 kb on + strand, within IAI47_00660at 142.687 kb on + strand, within IAI47_00660at 142.688 kb on - strand, within IAI47_00660at 142.688 kb on - strand, within IAI47_00660at 142.688 kb on - strand, within IAI47_00660at 142.688 kb on - strand, within IAI47_00660at 142.688 kb on - strand, within IAI47_00660at 142.688 kb on - strand, within IAI47_00660at 142.688 kb on - strand, within IAI47_00660at 142.688 kb on - strand, within IAI47_00660at 142.688 kb on - strand, within IAI47_00660at 142.688 kb on - strand, within IAI47_00660at 142.688 kb on - strand, within IAI47_00660at 142.703 kb on - strand, within IAI47_00660at 142.703 kb on - strand, within IAI47_00660at 142.720 kb on + strand, within IAI47_00660at 142.721 kb on - strand, within IAI47_00660at 142.721 kb on - strand, within IAI47_00660at 142.721 kb on - strand, within IAI47_00660at 142.721 kb on - strand, within IAI47_00660at 142.721 kb on - strand, within IAI47_00660at 142.721 kb on - strand, within IAI47_00660at 142.721 kb on - strand, within IAI47_00660at 142.721 kb on - strand, within IAI47_00660at 142.721 kb on - strand, within IAI47_00660at 142.721 kb on - strand, within IAI47_00660at 142.721 kb on - strand, within IAI47_00660at 142.721 kb on - strand, within IAI47_00660at 142.721 kb on - strand, within IAI47_00660at 142.741 kb on + strand, within IAI47_00660at 142.742 kb on - strand, within IAI47_00660at 142.779 kb on + strand, within IAI47_00660at 142.854 kb on - strand, within IAI47_00660at 142.854 kb on - strand, within IAI47_00660at 142.866 kb on + strand, within IAI47_00660at 142.867 kb on - strand, within IAI47_00660at 142.867 kb on - strand, within IAI47_00660at 142.867 kb on - strand, within IAI47_00660at 142.867 kb on - strand, within IAI47_00660at 142.867 kb on - strand, within IAI47_00660at 142.893 kb on - strand, within IAI47_00660at 142.916 kb on - strand, within IAI47_00660at 143.005 kb on + strand, within IAI47_00660at 143.005 kb on + strand, within IAI47_00660at 143.006 kb on - strand, within IAI47_00660at 143.007 kb on + strand, within IAI47_00660at 143.007 kb on + strand, within IAI47_00660at 143.008 kb on - strand, within IAI47_00660

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3
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140,858 - +0.2
140,858 - +0.7
140,858 - -0.4
140,858 - -0.8
140,858 - +0.6
140,858 - -0.8
140,858 - -0.0
140,862 - +0.9
140,862 - -0.8
140,862 - -1.5
140,868 - -1.4
140,868 - +0.2
140,896 - -1.2
140,896 - +0.4
140,917 - +0.8
140,917 - +0.4
140,958 + -0.8
140,959 - -1.2
140,965 + -0.5
140,965 + -0.7
140,965 + -0.1
140,966 - -0.7
140,966 - -1.8
141,240 + IAI47_00655 0.26 -0.8
141,273 - IAI47_00655 0.28 -1.6
141,280 + IAI47_00655 0.29 -2.1
141,325 - IAI47_00655 0.33 -2.4
141,325 - IAI47_00655 0.33 -1.4
141,464 - IAI47_00655 0.45 -3.4
141,695 + IAI47_00655 0.66 -2.0
141,703 - IAI47_00655 0.66 -3.4
142,073 - +0.4
142,090 - -0.8
142,138 - -0.6
142,138 - +0.0
142,138 - +0.2
142,138 - -0.4
142,162 + -1.2
142,162 + +0.2
142,163 - -0.8
142,204 + IAI47_00660 0.12 -2.1
142,205 - IAI47_00660 0.12 -1.2
142,205 - IAI47_00660 0.12 +0.8
142,267 + IAI47_00660 0.18 -1.8
142,267 + IAI47_00660 0.18 -1.2
142,267 + IAI47_00660 0.18 +0.2
142,267 + IAI47_00660 0.18 -0.2
142,268 - IAI47_00660 0.18 +0.2
142,268 - IAI47_00660 0.18 +0.5
142,322 - IAI47_00660 0.23 +0.8
142,322 - IAI47_00660 0.23 +0.6
142,418 - IAI47_00660 0.32 +0.1
142,418 - IAI47_00660 0.32 -0.6
142,445 - IAI47_00660 0.34 +0.2
142,459 + IAI47_00660 0.36 +0.2
142,459 + IAI47_00660 0.36 -0.2
142,459 + IAI47_00660 0.36 -0.4
142,459 + IAI47_00660 0.36 +0.2
142,460 - IAI47_00660 0.36 -0.5
142,460 - IAI47_00660 0.36 +0.4
142,460 - IAI47_00660 0.36 -2.1
142,531 + IAI47_00660 0.42 -1.2
142,532 - IAI47_00660 0.42 +0.2
142,532 - IAI47_00660 0.42 +1.8
142,532 - IAI47_00660 0.42 -0.0
142,532 - IAI47_00660 0.42 -0.6
142,532 - IAI47_00660 0.42 +3.0
142,532 - IAI47_00660 0.42 +2.5
142,532 - IAI47_00660 0.42 +0.1
142,564 + IAI47_00660 0.45 -0.4
142,565 - IAI47_00660 0.45 +0.2
142,565 - IAI47_00660 0.45 +0.0
142,565 - IAI47_00660 0.45 -0.2
142,565 - IAI47_00660 0.45 +0.2
142,565 - IAI47_00660 0.45 -0.1
142,565 - IAI47_00660 0.45 -2.1
142,565 - IAI47_00660 0.45 -0.5
142,565 - IAI47_00660 0.45 +1.8
142,566 + IAI47_00660 0.45 -0.1
142,566 + IAI47_00660 0.45 -1.4
142,567 - IAI47_00660 0.46 +0.2
142,567 - IAI47_00660 0.46 +0.6
142,567 - IAI47_00660 0.46 -0.4
142,567 - IAI47_00660 0.46 +0.1
142,567 - IAI47_00660 0.46 -0.2
142,567 - IAI47_00660 0.46 -1.2
142,567 - IAI47_00660 0.46 -0.1
142,567 - IAI47_00660 0.46 -0.1
142,567 - IAI47_00660 0.46 -0.4
142,567 - IAI47_00660 0.46 -0.6
142,567 - IAI47_00660 0.46 -0.2
142,567 - IAI47_00660 0.46 +1.2
142,567 - IAI47_00660 0.46 -0.8
142,567 - IAI47_00660 0.46 -1.2
142,629 + IAI47_00660 0.51 -1.4
142,629 + IAI47_00660 0.51 -0.2
142,629 + IAI47_00660 0.51 +0.2
142,630 - IAI47_00660 0.51 +0.2
142,630 - IAI47_00660 0.51 -1.5
142,652 - IAI47_00660 0.53 +0.2
142,661 - IAI47_00660 0.54 +0.7
142,661 - IAI47_00660 0.54 -0.4
142,687 + IAI47_00660 0.57 +0.8
142,687 + IAI47_00660 0.57 -0.4
142,687 + IAI47_00660 0.57 -0.8
142,687 + IAI47_00660 0.57 -0.8
142,687 + IAI47_00660 0.57 -0.4
142,687 + IAI47_00660 0.57 +0.2
142,688 - IAI47_00660 0.57 -0.8
142,688 - IAI47_00660 0.57 -0.3
142,688 - IAI47_00660 0.57 +1.0
142,688 - IAI47_00660 0.57 -0.0
142,688 - IAI47_00660 0.57 -0.4
142,688 - IAI47_00660 0.57 +0.2
142,688 - IAI47_00660 0.57 -0.4
142,688 - IAI47_00660 0.57 -1.0
142,688 - IAI47_00660 0.57 +0.5
142,688 - IAI47_00660 0.57 -0.9
142,688 - IAI47_00660 0.57 +0.6
142,703 - IAI47_00660 0.58 -0.0
142,703 - IAI47_00660 0.58 +0.5
142,720 + IAI47_00660 0.60 -0.8
142,721 - IAI47_00660 0.60 -0.8
142,721 - IAI47_00660 0.60 -0.3
142,721 - IAI47_00660 0.60 -0.4
142,721 - IAI47_00660 0.60 +0.2
142,721 - IAI47_00660 0.60 -0.3
142,721 - IAI47_00660 0.60 +1.2
142,721 - IAI47_00660 0.60 -1.3
142,721 - IAI47_00660 0.60 -0.4
142,721 - IAI47_00660 0.60 +0.2
142,721 - IAI47_00660 0.60 +1.2
142,721 - IAI47_00660 0.60 -0.3
142,721 - IAI47_00660 0.60 -0.5
142,721 - IAI47_00660 0.60 -0.7
142,741 + IAI47_00660 0.62 -0.4
142,742 - IAI47_00660 0.62 +0.4
142,779 + IAI47_00660 0.65 -1.4
142,854 - IAI47_00660 0.72 +0.2
142,854 - IAI47_00660 0.72 +0.2
142,866 + IAI47_00660 0.73 +0.0
142,867 - IAI47_00660 0.73 -0.6
142,867 - IAI47_00660 0.73 -0.4
142,867 - IAI47_00660 0.73 +0.5
142,867 - IAI47_00660 0.73 +0.2
142,867 - IAI47_00660 0.73 +0.2
142,893 - IAI47_00660 0.76 -1.5
142,916 - IAI47_00660 0.78 +0.1
143,005 + IAI47_00660 0.86 -0.5
143,005 + IAI47_00660 0.86 +0.2
143,006 - IAI47_00660 0.86 -1.2
143,007 + IAI47_00660 0.86 +0.2
143,007 + IAI47_00660 0.86 +0.7
143,008 - IAI47_00660 0.87 +1.0

Or see this region's nucleotide sequence