Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_20535 and IAI47_20540 are separated by 85 nucleotides IAI47_20540 and IAI47_20545 overlap by 11 nucleotides IAI47_20545 and IAI47_20550 are separated by 230 nucleotides IAI47_20550 and IAI47_20555 overlap by 13 nucleotides
IAI47_20535: IAI47_20535 - maltose ABC transporter permease MalG, at 357,503 to 358,393
_20535
IAI47_20540: IAI47_20540 - TetR/AcrR family transcriptional regulator, at 358,479 to 359,087
_20540
IAI47_20545: IAI47_20545 - NAD(P)H-dependent oxidoreductase, at 359,077 to 359,679
_20545
IAI47_20550: IAI47_20550 - ABC transporter permease, at 359,910 to 360,578
_20550
IAI47_20555: IAI47_20555 - ATP-binding cassette domain-containing protein, at 360,566 to 361,354
_20555
Position (kb) 359
360 Strain fitness (log2 ratio) -2
-1
0
1
2 at 358.160 kb on - strand, within IAI47_20535 at 358.160 kb on - strand, within IAI47_20535 at 358.229 kb on + strand, within IAI47_20535 at 358.230 kb on - strand, within IAI47_20535 at 358.230 kb on - strand, within IAI47_20535 at 358.256 kb on + strand, within IAI47_20535 at 358.256 kb on + strand, within IAI47_20535 at 358.256 kb on + strand, within IAI47_20535 at 358.257 kb on - strand, within IAI47_20535 at 358.257 kb on - strand, within IAI47_20535 at 358.257 kb on - strand, within IAI47_20535 at 358.274 kb on + strand, within IAI47_20535 at 358.275 kb on - strand, within IAI47_20535 at 358.275 kb on - strand, within IAI47_20535 at 358.275 kb on - strand, within IAI47_20535 at 358.275 kb on - strand, within IAI47_20535 at 358.360 kb on - strand at 358.391 kb on + strand at 358.392 kb on - strand at 358.392 kb on - strand at 358.407 kb on + strand at 358.407 kb on + strand at 358.407 kb on + strand at 358.408 kb on - strand at 358.408 kb on - strand at 358.408 kb on - strand at 358.408 kb on - strand at 358.422 kb on + strand at 358.422 kb on + strand at 358.423 kb on - strand at 358.423 kb on - strand at 358.480 kb on + strand at 358.480 kb on + strand at 358.480 kb on + strand at 358.480 kb on + strand at 358.480 kb on + strand at 358.481 kb on - strand at 358.481 kb on - strand at 358.481 kb on - strand at 358.481 kb on - strand at 358.500 kb on - strand at 358.500 kb on - strand at 358.500 kb on - strand at 358.650 kb on - strand, within IAI47_20540 at 358.650 kb on - strand, within IAI47_20540 at 358.697 kb on - strand, within IAI47_20540 at 358.789 kb on + strand, within IAI47_20540 at 358.789 kb on + strand, within IAI47_20540 at 358.789 kb on + strand, within IAI47_20540 at 358.789 kb on + strand, within IAI47_20540 at 358.888 kb on + strand, within IAI47_20540 at 358.888 kb on + strand, within IAI47_20540 at 358.889 kb on - strand, within IAI47_20540 at 358.889 kb on - strand, within IAI47_20540 at 358.889 kb on - strand, within IAI47_20540 at 358.930 kb on + strand, within IAI47_20540 at 358.931 kb on - strand, within IAI47_20540 at 359.071 kb on - strand at 359.138 kb on + strand, within IAI47_20545 at 359.138 kb on + strand, within IAI47_20545 at 359.138 kb on + strand, within IAI47_20545 at 359.138 kb on + strand, within IAI47_20545 at 359.138 kb on + strand, within IAI47_20545 at 359.139 kb on - strand, within IAI47_20545 at 359.139 kb on - strand, within IAI47_20545 at 359.170 kb on + strand, within IAI47_20545 at 359.171 kb on - strand, within IAI47_20545 at 359.171 kb on - strand, within IAI47_20545 at 359.171 kb on - strand, within IAI47_20545 at 359.171 kb on - strand, within IAI47_20545 at 359.383 kb on + strand, within IAI47_20545 at 359.384 kb on - strand, within IAI47_20545 at 359.384 kb on - strand, within IAI47_20545 at 359.384 kb on - strand, within IAI47_20545 at 359.384 kb on - strand, within IAI47_20545 at 359.420 kb on + strand, within IAI47_20545 at 359.421 kb on - strand, within IAI47_20545 at 359.598 kb on + strand, within IAI47_20545 at 359.599 kb on - strand, within IAI47_20545 at 359.665 kb on + strand at 359.665 kb on + strand at 359.665 kb on + strand at 359.666 kb on - strand at 359.666 kb on - strand at 359.666 kb on - strand at 359.666 kb on - strand at 359.666 kb on - strand at 359.668 kb on + strand at 359.668 kb on + strand at 359.668 kb on + strand at 359.669 kb on - strand at 359.669 kb on - strand at 359.669 kb on - strand at 359.669 kb on - strand at 359.669 kb on - strand at 359.669 kb on - strand at 359.669 kb on - strand at 359.691 kb on + strand at 359.691 kb on + strand at 359.691 kb on + strand at 359.692 kb on - strand at 359.692 kb on - strand at 359.729 kb on - strand at 359.734 kb on + strand at 359.756 kb on - strand at 359.756 kb on - strand at 359.756 kb on - strand at 359.840 kb on - strand at 359.902 kb on + strand at 359.904 kb on + strand at 359.905 kb on - strand at 359.905 kb on - strand at 359.911 kb on + strand at 359.911 kb on + strand at 359.912 kb on - strand at 359.920 kb on + strand at 359.968 kb on - strand at 360.026 kb on - strand, within IAI47_20550 at 360.171 kb on - strand, within IAI47_20550 at 360.195 kb on + strand, within IAI47_20550 at 360.195 kb on + strand, within IAI47_20550 at 360.196 kb on - strand, within IAI47_20550 at 360.196 kb on - strand, within IAI47_20550 at 360.196 kb on - strand, within IAI47_20550 at 360.196 kb on - strand, within IAI47_20550 at 360.196 kb on - strand, within IAI47_20550 at 360.248 kb on + strand, within IAI47_20550 at 360.248 kb on + strand, within IAI47_20550 at 360.333 kb on - strand, within IAI47_20550 at 360.384 kb on - strand, within IAI47_20550 at 360.395 kb on + strand, within IAI47_20550 at 360.395 kb on + strand, within IAI47_20550 at 360.396 kb on - strand, within IAI47_20550 at 360.514 kb on + strand at 360.514 kb on + strand at 360.514 kb on + strand at 360.514 kb on + strand at 360.515 kb on - strand at 360.515 kb on - strand at 360.515 kb on - strand at 360.515 kb on - strand at 360.515 kb on - strand at 360.515 kb on - strand at 360.515 kb on - strand at 360.515 kb on - strand at 360.563 kb on + strand at 360.563 kb on + strand at 360.564 kb on - strand at 360.564 kb on - strand at 360.564 kb on - strand at 360.564 kb on - strand at 360.572 kb on + strand at 360.572 kb on + strand at 360.572 kb on + strand at 360.573 kb on - strand at 360.573 kb on - strand at 360.573 kb on - strand at 360.573 kb on - strand at 360.585 kb on - strand at 360.600 kb on + strand at 360.601 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 358,160 - IAI47_20535 0.74 +0.9 358,160 - IAI47_20535 0.74 -0.3 358,229 + IAI47_20535 0.81 +0.2 358,230 - IAI47_20535 0.82 +0.5 358,230 - IAI47_20535 0.82 -0.0 358,256 + IAI47_20535 0.85 -0.8 358,256 + IAI47_20535 0.85 -0.7 358,256 + IAI47_20535 0.85 +2.2 358,257 - IAI47_20535 0.85 -0.0 358,257 - IAI47_20535 0.85 +2.2 358,257 - IAI47_20535 0.85 -0.3 358,274 + IAI47_20535 0.87 +0.7 358,275 - IAI47_20535 0.87 +0.3 358,275 - IAI47_20535 0.87 -1.1 358,275 - IAI47_20535 0.87 -0.8 358,275 - IAI47_20535 0.87 -0.0 358,360 - -0.3 358,391 + -1.0 358,392 - -0.1 358,392 - -0.4 358,407 + -0.8 358,407 + +0.2 358,407 + -0.1 358,408 - +0.2 358,408 - +0.2 358,408 - -0.1 358,408 - -0.6 358,422 + -1.6 358,422 + +0.5 358,423 - +0.2 358,423 - -1.0 358,480 + -1.4 358,480 + +1.0 358,480 + +0.3 358,480 + +0.7 358,480 + -1.4 358,481 - +0.9 358,481 - -0.6 358,481 - -0.2 358,481 - +0.7 358,500 - +1.2 358,500 - -0.2 358,500 - +0.5 358,650 - IAI47_20540 0.28 +2.5 358,650 - IAI47_20540 0.28 +1.6 358,697 - IAI47_20540 0.36 -1.1 358,789 + IAI47_20540 0.51 +0.7 358,789 + IAI47_20540 0.51 -0.4 358,789 + IAI47_20540 0.51 -0.4 358,789 + IAI47_20540 0.51 +1.2 358,888 + IAI47_20540 0.67 +0.3 358,888 + IAI47_20540 0.67 -0.2 358,889 - IAI47_20540 0.67 +1.6 358,889 - IAI47_20540 0.67 -2.1 358,889 - IAI47_20540 0.67 -0.0 358,930 + IAI47_20540 0.74 -0.3 358,931 - IAI47_20540 0.74 +0.2 359,071 - +0.4 359,138 + IAI47_20545 0.10 -0.3 359,138 + IAI47_20545 0.10 +0.4 359,138 + IAI47_20545 0.10 -0.1 359,138 + IAI47_20545 0.10 -0.8 359,138 + IAI47_20545 0.10 -1.1 359,139 - IAI47_20545 0.10 +0.6 359,139 - IAI47_20545 0.10 +1.4 359,170 + IAI47_20545 0.15 +0.3 359,171 - IAI47_20545 0.16 +0.8 359,171 - IAI47_20545 0.16 -0.3 359,171 - IAI47_20545 0.16 -0.2 359,171 - IAI47_20545 0.16 +0.2 359,383 + IAI47_20545 0.51 +0.5 359,384 - IAI47_20545 0.51 +0.6 359,384 - IAI47_20545 0.51 -0.6 359,384 - IAI47_20545 0.51 -0.3 359,384 - IAI47_20545 0.51 -0.2 359,420 + IAI47_20545 0.57 +0.6 359,421 - IAI47_20545 0.57 -1.2 359,598 + IAI47_20545 0.86 -0.6 359,599 - IAI47_20545 0.87 +0.4 359,665 + -0.0 359,665 + -0.2 359,665 + +1.4 359,666 - +0.7 359,666 - -0.4 359,666 - -0.5 359,666 - +0.6 359,666 - -0.4 359,668 + +0.5 359,668 + +0.2 359,668 + -0.6 359,669 - +1.4 359,669 - +1.1 359,669 - -0.0 359,669 - +1.0 359,669 - -0.5 359,669 - +0.0 359,669 - -0.3 359,691 + +0.3 359,691 + +0.8 359,691 + -0.4 359,692 - +0.2 359,692 - -1.3 359,729 - -0.3 359,734 + -0.3 359,756 - +1.2 359,756 - -0.6 359,756 - -0.6 359,840 - -0.4 359,902 + -0.7 359,904 + +1.6 359,905 - +0.6 359,905 - -0.6 359,911 + -0.9 359,911 + +0.6 359,912 - -0.2 359,920 + +0.3 359,968 - -1.0 360,026 - IAI47_20550 0.17 -0.8 360,171 - IAI47_20550 0.39 -0.4 360,195 + IAI47_20550 0.43 +1.2 360,195 + IAI47_20550 0.43 -0.7 360,196 - IAI47_20550 0.43 +0.6 360,196 - IAI47_20550 0.43 +1.5 360,196 - IAI47_20550 0.43 +0.4 360,196 - IAI47_20550 0.43 -0.1 360,196 - IAI47_20550 0.43 -0.1 360,248 + IAI47_20550 0.51 -0.4 360,248 + IAI47_20550 0.51 -0.4 360,333 - IAI47_20550 0.63 +0.7 360,384 - IAI47_20550 0.71 -0.8 360,395 + IAI47_20550 0.72 -0.4 360,395 + IAI47_20550 0.72 -1.4 360,396 - IAI47_20550 0.73 +0.4 360,514 + +0.2 360,514 + -1.6 360,514 + -1.7 360,514 + -0.1 360,515 - +1.3 360,515 - -0.6 360,515 - +1.3 360,515 - -0.8 360,515 - +0.2 360,515 - +1.6 360,515 - -0.8 360,515 - -1.8 360,563 + +0.2 360,563 + -0.2 360,564 - -0.8 360,564 - -0.1 360,564 - +0.2 360,564 - -0.8 360,572 + +0.9 360,572 + -0.5 360,572 + -0.3 360,573 - -0.4 360,573 - +0.8 360,573 - -0.8 360,573 - +0.3 360,585 - -0.4 360,600 + -1.0 360,601 - -1.4
Or see this region's nucleotide sequence