Strain Fitness in Pantoea sp. MT58 around IAI47_19435

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
115,036	+		IAI47_19425	0.86	-0.2
115,037	-		IAI47_19425	0.86	-0.4
115,047	+		IAI47_19425	0.87	-1.8
115,073	+		IAI47_19425	0.88	+0.2
115,073	+		IAI47_19425	0.88	+1.3
115,073	+		IAI47_19425	0.88	+0.5
115,073	+		IAI47_19425	0.88	+0.4
115,073	+		IAI47_19425	0.88	+0.7
115,073	+		IAI47_19425	0.88	-0.3
115,073	+		IAI47_19425	0.88	+0.4
115,074	-		IAI47_19425	0.88	+1.0
115,074	-		IAI47_19425	0.88	+0.2
115,074	-		IAI47_19425	0.88	-0.1
115,074	-		IAI47_19425	0.88	-0.0
115,074	-		IAI47_19425	0.88	+0.7
115,074	-		IAI47_19425	0.88	+0.1
115,074	-		IAI47_19425	0.88	+0.2
115,074	-		IAI47_19425	0.88	-2.6
115,141	+				-0.1
115,168	+				-0.7
115,168	+				-0.8
115,169	-				-1.4
115,169	-				-1.2
115,180	+				+0.7
115,181	-				+0.2
115,291	+				-0.2
115,291	+				-0.8
115,292	-				+0.2
115,305	-				-0.8
115,350	+				+0.8
115,350	+				+0.8
115,350	+				+2.3
115,351	-				+0.2
115,351	-				-0.2
115,351	-				-0.1
115,413	+				+0.2
115,413	+				-0.6
115,484	+				+0.4
115,497	+		IAI47_19430	0.11	+0.4
115,532	-		IAI47_19430	0.19	+0.4
115,532	-		IAI47_19430	0.19	-0.9
115,743	+		IAI47_19430	0.63	+1.2
115,743	+		IAI47_19430	0.63	-1.2
115,744	-		IAI47_19430	0.64	-0.2
115,744	-		IAI47_19430	0.64	-1.6
115,816	+		IAI47_19430	0.79	+1.0
115,817	-		IAI47_19430	0.79	+0.2
115,855	+		IAI47_19430	0.87	+0.4
115,855	+		IAI47_19430	0.87	-0.7
115,891	-				-2.4
115,891	-				-0.4
115,891	-				+0.6
115,891	-				+0.6
115,912	+				-0.6
115,912	+				-1.0
115,992	+				+1.5
115,992	+				+0.2
115,992	+				+0.6
115,992	+				-0.8
115,992	+				+0.2
115,992	+				+0.3
115,993	-				-0.4
115,993	-				-0.7
115,993	-				-1.1
115,993	-				+1.8
115,994	+				+1.8
115,994	+				+1.5
115,994	+				+0.7
115,994	+				-0.1
115,995	-				+0.9
115,995	-				-1.1
115,995	-				+1.2
115,995	-				+1.2
116,047	+				+1.0
116,047	+				+0.2
116,047	+				+0.6
116,052	-				-0.1
116,052	-				-0.2
116,052	-				+1.0
116,096	+				+0.6
116,096	+				+2.1
116,098	+				+1.0
116,098	+				+0.2
116,099	-				-0.8
116,155	-		IAI47_19435	0.16	+0.2
116,281	+		IAI47_19435	0.30	-0.8
116,394	+		IAI47_19435	0.43	+0.2
116,394	+		IAI47_19435	0.43	+0.5
116,395	-		IAI47_19435	0.43	-0.2
116,395	-		IAI47_19435	0.43	-0.4
116,426	+		IAI47_19435	0.46	-0.2
116,465	-		IAI47_19435	0.51	+0.0
116,465	-		IAI47_19435	0.51	+1.2
116,465	-		IAI47_19435	0.51	+0.3
116,554	+		IAI47_19435	0.61	+0.4
116,590	+		IAI47_19435	0.65	+0.7
116,590	+		IAI47_19435	0.65	-1.2
116,590	+		IAI47_19435	0.65	-0.4
116,590	+		IAI47_19435	0.65	-0.2
116,591	-		IAI47_19435	0.65	-1.1
116,591	-		IAI47_19435	0.65	-0.3
116,596	+		IAI47_19435	0.66	+0.5
116,596	+		IAI47_19435	0.66	-1.3
116,596	+				+0.2
116,596	+		IAI47_19435	0.66	-1.4
116,596	+		IAI47_19435	0.66	+1.2
116,597	-		IAI47_19435	0.66	+4.0
116,706	+		IAI47_19435	0.78	-0.4
116,706	+		IAI47_19435	0.78	+2.8
116,707	-		IAI47_19435	0.78	-0.8
116,707	-		IAI47_19435	0.78	-0.4
116,707	-		IAI47_19435	0.78	-0.0
116,716	+		IAI47_19435	0.79	+0.9
116,717	-		IAI47_19435	0.80	+0.3
116,795	-		IAI47_19435	0.88	-0.3
116,878	+				+1.0
116,878	+				+0.8
116,878	+				+0.4
116,879	-				+0.9
116,879	-				-1.3
116,921	-				+0.6
116,940	+				+0.2
116,949	-				-0.8
117,024	+				+0.6
117,068	+		IAI47_19440	0.11	-0.7
117,068	+		IAI47_19440	0.11	+0.2
117,068	+		IAI47_19440	0.11	+0.3
117,141	+		IAI47_19440	0.18	-1.3
117,142	-		IAI47_19440	0.18	+0.2
117,168	+		IAI47_19440	0.21	+0.2
117,169	-		IAI47_19440	0.21	-0.6
117,173	+		IAI47_19440	0.21	+0.2
117,173	+		IAI47_19440	0.21	+0.8
117,285	+		IAI47_19440	0.32	-0.8
117,285	+		IAI47_19440	0.32	+0.3
117,285	+		IAI47_19440	0.32	-0.3
117,286	-		IAI47_19440	0.32	-0.4
117,286	-		IAI47_19440	0.32	-0.6
117,288	+		IAI47_19440	0.32	+0.3
117,375	+		IAI47_19440	0.40	+0.3
117,375	+		IAI47_19440	0.40	-0.4
117,375	+		IAI47_19440	0.40	+0.1
117,376	-		IAI47_19440	0.40	-0.2
117,410	-		IAI47_19440	0.43	+0.8
117,410	-		IAI47_19440	0.43	+0.5
117,410	-		IAI47_19440	0.43	+0.2
117,410	-		IAI47_19440	0.43	-0.4
117,410	-		IAI47_19440	0.43	+1.3
117,443	+		IAI47_19440	0.47	+0.3
117,443	+		IAI47_19440	0.47	-0.0
117,443	+		IAI47_19440	0.47	-0.2
117,443	+		IAI47_19440	0.47	+0.3
117,443	+		IAI47_19440	0.47	+1.2
117,443	+		IAI47_19440	0.47	-0.5
117,443	+		IAI47_19440	0.47	+0.2
117,443	+		IAI47_19440	0.47	-0.3
117,443	+		IAI47_19440	0.47	-0.2
117,444	-		IAI47_19440	0.47	+0.0
117,444	-		IAI47_19440	0.47	+0.9
117,444	-		IAI47_19440	0.47	+0.2
117,444	-		IAI47_19440	0.47	+0.2
117,534	+		IAI47_19440	0.55	+0.2
117,624	+		IAI47_19440	0.64	+0.1
117,647	+		IAI47_19440	0.66	-0.6
117,647	+		IAI47_19440	0.66	-1.4
117,648	-		IAI47_19440	0.66	+1.3
117,648	-		IAI47_19440	0.66	+0.8
117,648	-		IAI47_19440	0.66	+0.2
117,656	+		IAI47_19440	0.67	+1.2
117,656	+		IAI47_19440	0.67	-0.8
117,657	-		IAI47_19440	0.67	-0.7